From: Steffen Moeller Date: Tue, 4 Jun 2019 17:31:31 +0200 Subject: Finalise Python3 support Last-Update: 2019-06-04 16:35:10 +0200 --- scripts/flatten_json.py | 4 +++- scripts/get_fragment_length.py | 2 ++ 2 files changed, 5 insertions(+), 1 deletion(-) diff --git a/scripts/flatten_json.py b/scripts/flatten_json.py index 3679011..c3654af 100644 --- a/scripts/flatten_json.py +++ b/scripts/flatten_json.py @@ -1,3 +1,5 @@ +#!/usr/bin/python3 + import sys import json from collections import OrderedDict @@ -26,7 +28,7 @@ def outputGeneTable(fusions, outf, filters = None): outf.write('\n') def usage(): - print("Usage: python flatten_json.py fusion.out.json [genetable.txt]") + print("Usage: python3 flatten_json.py fusion.out.json [genetable.txt]") print("") print(" outputs a flat table listing all gene fusions, if the output file is not") print(" specified it prints to standard output") diff --git a/scripts/get_fragment_length.py b/scripts/get_fragment_length.py index 5b48543..1662729 100644 --- a/scripts/get_fragment_length.py +++ b/scripts/get_fragment_length.py @@ -1,3 +1,5 @@ +#!/usr/bin/python3 + import h5py import numpy as np import sys