Author: Andreas Tille <tille@debian.org>
Last-Update: Thu, 04 Aug 2022 16:12:54 +0200
Bug-Debian: https://bugs.debian.org/1016346
Description: Fix LaTeX issue

--- a/doc/PyCorrFit_doc.tex
+++ b/doc/PyCorrFit_doc.tex
@@ -4,7 +4,7 @@
 %Wir arbeiten mit PDF-Latex.
 %Bei Texmaker unter Werkzeuge > PDFLaTeX (F6)
 
-\usepackage[utf8x]{inputenc}
+\usepackage[utf8]{inputenc}
 %\usepackage{tipa} % apt-get install tipa
 %Für deutsche Schriften:
 %\usepackage[ngerman]{babel}
--- a/doc/PyCorrFit_doc_models.tex
+++ b/doc/PyCorrFit_doc_models.tex
@@ -285,7 +285,7 @@ $\tau_\mathrm{trip}$ &  Characteristic r
 
 % 3D TIRF diffusion (□xσ)
 \noindent \begin{tabular}{lp{.7\textwidth}}
-Name & \textbf{TIR (□x$\upsigma$/Exp.) 3D} \\ 
+Name & \textbf{TIR ($\Box{}x\sigma$/Exp.) 3D} \\ 
 ID & \textbf{6010} \\ 
 Descr. &  Three-dimensional diffusion with a square-shaped lateral detection area taking into account the size of the point spread function; and an exponential decaying profile in axial direction\cite{Ries2008, Yordanov2011}. \\ 
 \end{tabular}
@@ -310,17 +310,17 @@ $D$ & Diffusion coefficient \\
 
 % 3D+3D TIRF diffusion (□xσ)
 \noindent \begin{tabular}{lp{.7\textwidth}}
-Name & \textbf{TIR (□x$\upsigma$/Exp.) 3D+3D} \\ 
+Name & \textbf{TIR ($\Box{}x\sigma$/Exp.) 3D+3D} \\ 
 ID & \textbf{6023} \\ 
 Descr. &  Two-component three-dimensional free diffusion with a square-shaped lateral detection area taking into account the size of the point spread function; and an exponential decaying profile in axial direction. \newline
-The correlation function is a superposition of three-dimensional model functions of the type \textbf{3D (□x$\upsigma$)} (6010)\cite{Ries2008, Yordanov2011}. \\
+The correlation function is a superposition of three-dimensional model functions of the type \textbf{3D ($\Box{}x\sigma$)} (6010)\cite{Ries2008, Yordanov2011}. \\
 \end{tabular}
 \vspace{2em}
 
 
 % 2D TIRF diffusion (□xσ)
 \noindent \begin{tabular}{lp{.7\textwidth}}
-Name & \textbf{TIR (□x$\upsigma$) 2D} \\ 
+Name & \textbf{TIR ($\Box{}x\sigma$) 2D} \\ 
 ID & \textbf{6000} \\ 
 Descr. &  Two-dimensional diffusion with a square-shaped lateral detection area taking into account the size of the point spread function\cite{Ries2008, Yordanov2011}\footnote{The reader is made aware, that reference \cite{Ries2008} contains several unfortunate misprints.}. \\ 
 \end{tabular}
@@ -344,27 +344,27 @@ $D$ & Diffusion coefficient \\
 
 % 2D+2D TIRF diffusion (□xσ)
 \noindent \begin{tabular}{lp{.7\textwidth}}
-Name & \textbf{TIR (□x$\upsigma$) 2D+2D} \\ 
+Name & \textbf{TIR ($\Box{}x\sigma$) 2D+2D} \\ 
 ID & \textbf{6022} \\ 
 Descr. &  Two-component two-dimensional diffusion with a square-shaped lateral detection area taking into account the size of the point spread function. \newline
-The correlation function is a superposition of two-dimensional model functions of the type \textbf{2D (□x$\upsigma$)} (6000)\cite{Ries2008, Yordanov2011}. \\
+The correlation function is a superposition of two-dimensional model functions of the type \textbf{2D ($\Box{}x\sigma$)} (6000)\cite{Ries2008, Yordanov2011}. \\
 \end{tabular}
 \vspace{2em}
 
 
 % 3D+2D TIRF diffusion (□xσ)
 \noindent \begin{tabular}{lp{.7\textwidth}}
-Name & \textbf{TIR (□x$\upsigma$/Exp.) 3D+2D} \\ 
+Name & \textbf{TIR ($\Box{}x\sigma$/Exp.) 3D+2D} \\ 
 ID & \textbf{6020} \\ 
 Descr. &  Two-component two- and three-dimensional diffusion with a square-shaped lateral detection area taking into account the size of the point spread function; and an exponential decaying profile in axial direction.  \newline
-The correlation function is a superposition of the two-dimensional model function \textbf{2D (□x$\upsigma$)} (6000) and the three-dimensional model function \textbf{3D (□x$\upsigma$)} (6010)\cite{Ries2008, Yordanov2011}.
+The correlation function is a superposition of the two-dimensional model function \textbf{2D ($\Box{}x\sigma$)} (6000) and the three-dimensional model function \textbf{3D ($\Box{}x\sigma$)} (6010)\cite{Ries2008, Yordanov2011}.
 \end{tabular}
 \vspace{2em}
 
 
 % 3D+2D+kin TIRF diffusion (□xσ)
 \noindent \begin{tabular}{lp{.7\textwidth}}
-Name & \textbf{TIR (□x$\upsigma$/Exp.) 3D+2D+kin} \\ 
+Name & \textbf{TIR ($\Box{}x\sigma$/Exp.) 3D+2D+kin} \\ 
 ID & \textbf{6021} \\ 
 Descr. &  Two-component two- and three-dimensional diffusion with a square-shaped lateral detection area taking into account the size of the point spread function; and an exponential decaying profile in axial direction. This model covers binding and unbinding kintetics.  \newline 
 The correlation function for this model was introduced in \cite{Ries2008}. Because approximations are made in the derivation, please verify if this model is applicable to your problem before using it.
--- a/doc/Bibliography.bib
+++ b/doc/Bibliography.bib
@@ -155,7 +155,7 @@
 }
 
 @Article{Brinkmeier1999,
-  Title                    = {Two-beam cross-correlation:  a method to characterize transport phenomena in micrometer-sized structures.},
+  Title                    = {Two-beam cross-correlation: a method to characterize transport phenomena in micrometer-sized structures.},
   Author                   = {M. Brinkmeier and K. Dörre and J. Stephan and M. Eigen},
   Journal                  = {Analytical Chemistry},
   Year                     = {1999},