"""
Use lammpsdata module to create an Atoms object from a lammps data file
and checks that the cell, mass, positions, and velocities match the
values that are parsed directly from the data file.

NOTE: This test currently only works when using a lammps data file
containing a single atomic species
"""
import ase.io

from .comparison import compare_with_pytest_approx
from .parse_lammps_data_file import lammpsdata_file_extracted_sections

# Relative tolerance for comparing floats with pytest.approx
REL_TOL = 1e-2


def test_lammpsdata_read(lammpsdata_file_path):
    atoms = ase.io.read(
        lammpsdata_file_path,
        format='lammps-data',
        read_image_flags=False,
        units='metal',
    )

    expected_values = lammpsdata_file_extracted_sections(lammpsdata_file_path)

    # Check cell was read in correctly
    cell_read_in = atoms.get_cell()
    cell_expected = expected_values['cell']
    compare_with_pytest_approx(cell_read_in, cell_expected, REL_TOL)

    # Check masses were read in correctly
    masses_read_in = atoms.get_masses()
    masses_expected = [expected_values['mass']] * \
        len(expected_values['positions'])
    compare_with_pytest_approx(masses_read_in, masses_expected, REL_TOL)

    # Check positions were read in correctly
    positions_read_in = atoms.get_positions()
    positions_expected = expected_values['positions']
    compare_with_pytest_approx(positions_read_in, positions_expected, REL_TOL)

    # Check velocities were read in correctly
    velocities_read_in = atoms.get_velocities()
    velocities_expected = expected_values['velocities']
    compare_with_pytest_approx(velocities_read_in, velocities_expected, REL_TOL)

    # TODO: Also check charges, travels, molecule id, bonds, and angles