Author: Tim Booth Last-Update: Fri, 28 Feb 2014 16:25:41 +0000 Description: This patch allows biom to work even if there is an older installation of the biom libs in /usr/local/... Not sure if this is the neatest fix, but absolute_imports doesn't seem to be the full answer here as we have one module hooking in another, and probably looking for the default installed version is normally what you'd want. --- biom-format-2.0.0.orig/scripts/biom +++ biom-format-2.0.0/scripts/biom @@ -19,4 +19,6 @@ # __maintainer__ = "Greg Caporaso" # __email__ = "gregcaporaso@gmail.com" +export PYTHONPATH=/usr/lib/python`python --version 2>&1 | grep -o '[1-9]\.[0-9]\+'`/dist-packages + exec pyqi --driver-name biom --command-config-module biom.interfaces.optparse.config -- "$@" --- biom-format-2.0.0.orig/biom/__init__.py +++ biom-format-2.0.0/biom/__init__.py @@ -8,6 +8,8 @@ # The full license is in the file COPYING.txt, distributed with this software. # ---------------------------------------------------------------------------- +from __future__ import absolute_import + __author__ = "Daniel McDonald" __copyright__ = "Copyright 2011-2013, The BIOM Format Development Team" __credits__ = ["Daniel McDonald", "Jai Ram Rideout", "Greg Caporaso",