Saf.txt ======= Saf --- The Saf module works with Saf-formatted sequence data. Data is available at: http://www.embl-heidelberg.de/predictprotein/Dexa/optin_safDes.html The Saf record contains a Generic alignment object. Generic is part of the biopython distribution. The following code fragment is an example of how to parse SAF files into a record and print the record. records = Bio.Saf.Iterator( fh, Bio.Saf.RecordParser(debug_level=0)) while 1: record = records.next() if record is not None: print record pass else: break print "\n"