BLAST TEST DATA FILES ===================== This directory contains various data files for testing the BLAST-related code in Biopython. All files are grouped by BLAST release version, from the most recent first. BLAST+ 2.2.30 ------------- text_2230_blastp_001 single query, match with full line of dashes BLAST 2.2.28+ ------------- tab_2228_tblastn_001 single query, custom columns: evalue sallseqid qseqid, commented tab_2228_tblastx_001 single query with all columns (including new ones added in this version), commented BLAST 2.2.26+ ------------- tab_2226_tblastn_001 multiple queries tab_2226_tblastn_002 single query, no hits tab_2226_tblastn_003 single query, hits @ single hsp tab_2226_tblastn_004 single query, multiple hsps per hit present tab_2226_tblastn_005 multiple queries, commented tab_2226_tblastn_006 single query, no hits, commented tab_2226_tblastn_007 single query, hits @ single hsp, commented tab_2226_tblastn_008 single query, multiple hsps per hit present, commented tab_2226_tblastn_009 multiple queries with custom columns tab_2226_tblastn_010 multiple queries with custom columns, commented tab_2226_tblastn_011 multiple queries with all columns, commented tab_2226_tblastn_012 multiple quries, remote search, standard columns, commented tab_2226_tblastn_013 single query, custom columns: qsseq std sseq text_2226_blastn_001 single query, no hits text_2226_blastn_002 single query, hits @ single hsp text_2226_blastn_003 single query, multiple hsps per hit present text_2226_blastn_004 multiple queries text_2226_blastp_001 single query, no hits text_2226_blastp_002 single query, hits @ single hsp text_2226_blastp_003 single query, multiple hsps per hit present text_2226_blastp_004 multiple queries text_2226_blastx_001 single query, no hits text_2226_blastx_002 single query, hits @ single hsp text_2226_blastx_003 single query, multiple hsps per hit present text_2226_blastx_004 multiple queries text_2226_tblastn_001 single query, no hits text_2226_tblastn_002 single query, hits @ single hsp text_2226_tblastn_003 single query, multiple hsps per hit present text_2226_tblastn_004 multiple queries text_2226_tblastx_001 single query, no hits text_2226_tblastx_002 single query, hits @ single hsp text_2226_tblastx_003 single query, multiple hsps per hit present text_2226_tblastx_004 multiple queries xml_2226_blastn_001.xml multiple queries xml_2226_blastn_002.xml single query, no hits xml_2226_blastn_003.xml single query, hits @ single hsp xml_2226_blastn_004.xml single query, multiple hsps per hit present xml_2226_blastn_005.xml multiple queries, remote search on NCBI's database xml_2226_blastn_006.xml single query, against a database with duplicate entries xml_2226_blastp_001.xml multiple queries xml_2226_blastp_002.xml single query, no hits xml_2226_blastp_003.xml single query, hits @ single hsp xml_2226_blastp_004.xml single query, multiple hsps per hit present xml_2226_blastp_005.xml multiple queries, remote search on NCBI's database xml_2226_blastx_001.xml multiple queries xml_2226_blastx_002.xml single query, no hits xml_2226_blastx_003.xml single query, multiple hsps per hit present xml_2226_blastx_004.xml multiple queries, remote search on NCBI's database xml_2226_tblastn_001.xml multiple queries xml_2226_tblastn_002.xml single query, no hits xml_2226_tblastn_003.xml single query, hits @ single hsp xml_2226_tblastn_004.xml single query, multiple hsps per hit present xml_2226_tblastn_005.xml multiple queries, remote search on NCBI's database xml_2226_tblastx_001.xml multiple queries xml_2226_tblastx_002.xml single query, no hits xml_2226_tblastx_003.xml single query, multiple hsps per hit present xml_2226_tblastx_004.xml multiple queries, remote search on NCBI's database BLAST 2.2.22+ ------------- text_2222_blastx_001.txt multiple queries xml_2222_blastp_001.xml n/a xml_2222_blastx_001.xml compare with text_2222_blastx_001.txt BLAST 2.2.22 (Legacy) --------------------- text_2222L_blastx_001.txt multiple queries BLAST 2.2.21 (Legacy) --------------------- text_2221L_blastp_001.txt multiple queries BLAST 2.2.20 (Legacy) --------------------- text_2220L_blastx_001.txt multiple hits @ single hsp text_2220L_blastx_002.txt multiple queries, most with no hits BLAST 2.2.18+ ------------- xml_2218_blastp_001.xml n/a xml_2218_blastp_002.xml n/a BLAST 2.2.18 (Legacy) --------------------- xml_2218L_blastp_001.xml n/a xml_2218L_rpsblast_001.xml n/a BLAST 2.2.16 (Legacy) --------------------- text_2216L_tblastn_001.txt multiple hits, multiple hsps per hit present BLAST 2.2.15 (Legacy) --------------------- text_2215L_blastx_001.txt no hits, single query BLAST 2.2.12 (Legacy) --------------------- xml_2212L_blastn_001.xml n/a xml_2212L_blastp_001.xml n/a xml_2212L_blastx_001.xml n/a xml_2212L_tblastn_001.xml n/a xml_2212L_tblastx_001.xml n/a BLAST 2.2.8 (Legacy) -------------------- text_2208L_psiblast_001.txt no 'Searching...' lines BLAST 2.2.2 (Legacy) -------------------- text_2202L_blastn_001.txt no hits, with errors text_2202L_blastn_002.txt no hits text_2202L_blastp_001.txt n/a BLAST 2.2.1 (Legacy) -------------------- text_2201L_blastx_001.txt No 'length of query' BLAST 2.1.2 (Legacy) -------------------- text_2102L_blastn_001.txt no hits BLAST 2.0.14 (Legacy) --------------------- text_2014L_blastn_001.txt multiple hits @ single hsp text_2014L_psiblast_001.txt no model sequences found (from Mike Poidinger) BLAST 2.0.12 (Legacy) --------------------- text_2012L_psiblast_001.txt multiple db (from Mike Poidinger) BLAST 2.0.11 (Legacy) --------------------- text_2011L_blastp_001.txt multiple hits @ single hsp text_2011L_blastp_002.txt no hits text_2011L_blastp_003.txt multiple hits, multiple hsps per hit present text_2011L_blastp_004.txt no descriptions text_2011L_blastp_005.txt hit table only text_2011L_blastp_006.txt master-slave text_2011L_blastp_007.txt master-slave, no descriptions text_2011L_phiblast_001.txt converged in 2 rounds text_2011L_phiblast_002.txt no new sequences before 'CONVERGED!' message text_2011L_phiblast_003.txt master-slave text_2011L_blastn_001.txt multiple hits @ single hsp text_2011L_blastn_002.txt hit table only text_2011L_blastn_003.txt no descriptions text_2011L_blastn_004.txt master-slave text_2011L_blastx_001.txt multiple hits @ single hsp text_2011L_blastx_002.txt no hits text_2011L_tblastn_001.txt multiple hits @ single hsp text_2011L_tblastn_002.txt no hits text_2011L_tblastx_001.txt multiple hits @ multiple hsps BLAST 2.0.10 (Legacy) --------------------- text_2010L_blastp_001.txt multiple hits @ single hsp text_2010L_blastp_002.txt no hits text_2010L_blastp_003.txt multiple hits, multiple hsps per hit present text_2010L_blastp_004.txt no descriptions text_2010L_blastp_005.txt hit table only text_2010L_blastp_006.txt master-slave text_2010L_blastp_007.txt master-slave, no descriptions text_2010L_phiblast_001.txt converged in 1 round text_2010L_phiblast_002.txt converged in 3 rounds text_2010L_phiblast_003.txt no new sequences before 'CONVERGED!' message text_2010L_blastn_001.txt multiple hits @ single hsp text_2010L_blastn_002.txt no hits text_2010L_blastn_003.txt multiple hits @ single hsp, no hit table text_2010L_blastn_004.txt master-slave text_2010L_blastx_001.txt multiple hits @ single hsp text_2010L_blastx_002.txt no hits text_2010L_tblastn_001.txt multiple hits @ single hsp text_2010L_tblastn_002.txt no hits text_2010L_tblastx_001.txt multiple hits @ multiple hsps