ID CLD1_HUMAN Reviewed; 211 AA. AC O95832; DT 30-MAY-2000, integrated into UniProtKB/Swiss-Prot. DT 01-MAY-1999, sequence version 1. DT 12-OCT-2022, entry version 186. DE RecName: Full=Claudin-1; DE AltName: Full=Senescence-associated epithelial membrane protein; GN Name=CLDN1; Synonyms=CLD1, SEMP1; ORFNames=UNQ481/PRO944; OS Homo sapiens (Human). OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. OX NCBI_TaxID=9606; RN [1] RP NUCLEOTIDE SEQUENCE [MRNA], AND TISSUE SPECIFICITY. RX PubMed=9931503; DOI=10.1016/s0378-1119(98)00553-8; RA Swisshelm K.L., Machl A., Planitzer S., Robertson R., Kubbies M., RA Hosier S.; RT "SEMP1, a senescence-associated cDNA isolated from human mammary epithelial RT cells, is a member of an epithelial membrane protein superfamily."; RL Gene 226:285-295(1999). RN [2] RP NUCLEOTIDE SEQUENCE [MRNA]. RA Mitic L.M., Anderson J.M.; RT "Human claudin-1 isolated from Caco-2 mRNA."; RL Submitted (DEC-1998) to the EMBL/GenBank/DDBJ databases. RN [3] RP NUCLEOTIDE SEQUENCE [MRNA]. RX PubMed=10828592; DOI=10.1159/000015553; RA Halford S., Spencer P., Greenwood J., Winton H., Hunt D.M., Adamson P.; RT "Assignment of claudin-1 (CLDN1) to human chromosome 3q28-->q29 with RT somatic cell hybrids."; RL Cytogenet. Cell Genet. 88:217-217(2000). RN [4] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA]. RX PubMed=11071387; DOI=10.1007/s004390000375; RA Kraemer F., White K., Kubbies M., Swisshelm K.L., Weber B.H.F.; RT "Genomic organization of claudin-1 and its assessment in hereditary and RT sporadic breast cancer."; RL Hum. Genet. 107:249-256(2000). RN [5] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RX PubMed=12975309; DOI=10.1101/gr.1293003; RA Clark H.F., Gurney A.L., Abaya E., Baker K., Baldwin D.T., Brush J., RA Chen J., Chow B., Chui C., Crowley C., Currell B., Deuel B., Dowd P., RA Eaton D., Foster J.S., Grimaldi C., Gu Q., Hass P.E., Heldens S., Huang A., RA Kim H.S., Klimowski L., Jin Y., Johnson S., Lee J., Lewis L., Liao D., RA Mark M.R., Robbie E., Sanchez C., Schoenfeld J., Seshagiri S., Simmons L., RA Singh J., Smith V., Stinson J., Vagts A., Vandlen R.L., Watanabe C., RA Wieand D., Woods K., Xie M.-H., Yansura D.G., Yi S., Yu G., Yuan J., RA Zhang M., Zhang Z., Goddard A.D., Wood W.I., Godowski P.J., Gray A.M.; RT "The secreted protein discovery initiative (SPDI), a large-scale effort to RT identify novel human secreted and transmembrane proteins: a bioinformatics RT assessment."; RL Genome Res. 13:2265-2270(2003). RN [6] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RA Ebert L., Schick M., Neubert P., Schatten R., Henze S., Korn B.; RT "Cloning of human full open reading frames in Gateway(TM) system entry RT vector (pDONR201)."; RL Submitted (JUN-2004) to the EMBL/GenBank/DDBJ databases. RN [7] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RC TISSUE=Urinary bladder; RX PubMed=15489334; DOI=10.1101/gr.2596504; RG The MGC Project Team; RT "The status, quality, and expansion of the NIH full-length cDNA project: RT the Mammalian Gene Collection (MGC)."; RL Genome Res. 14:2121-2127(2004). RN [8] RP INVOLVEMENT IN NISCH. RX PubMed=15521008; DOI=10.1053/j.gastro.2004.07.022; RA Hadj-Rabia S., Baala L., Vabres P., Hamel-Teillac D., Jacquemin E., RA Fabre M., Lyonnet S., De Prost Y., Munnich A., Hadchouel M., Smahi A.; RT "Claudin-1 gene mutations in neonatal sclerosing cholangitis associated RT with ichthyosis: a tight junction disease."; RL Gastroenterology 127:1386-1390(2004). RN [9] RP INVOLVEMENT IN NISCH. RX PubMed=16619213; DOI=10.1002/humu.20333; RA Feldmeyer L., Huber M., Fellmann F., Beckmann J.S., Frenk E., Hohl D.; RT "Confirmation of the origin of NISCH syndrome."; RL Hum. Mutat. 27:408-410(2006). RN [10] RP FUNCTION (MICROBIAL INFECTION), AND MUTAGENESIS OF ILE-32 AND GLU-48. RX PubMed=17325668; DOI=10.1038/nature05654; RA Evans M.J., von Hahn T., Tscherne D.M., Syder A.J., Panis M., Wolk B., RA Hatziioannou T., McKeating J.A., Bieniasz P.D., Rice C.M.; RT "Claudin-1 is a hepatitis C virus co-receptor required for a late step in RT entry."; RL Nature 446:801-805(2007). RN [11] RP FUNCTION (MICROBIAL INFECTION), SUBCELLULAR LOCATION, INTERACTION WITH RP OCLN; CD81; CLDN4; CLDN6 AND CLDN9, AND MUTAGENESIS OF ILE-32 AND GLU-48. RX PubMed=20375010; DOI=10.1074/jbc.m110.104836; RA Harris H.J., Davis C., Mullins J.G., Hu K., Goodall M., Farquhar M.J., RA Mee C.J., McCaffrey K., Young S., Drummer H., Balfe P., McKeating J.A.; RT "Claudin association with CD81 defines hepatitis C virus entry."; RL J. Biol. Chem. 285:21092-21102(2010). RN [12] RP IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. RX PubMed=21269460; DOI=10.1186/1752-0509-5-17; RA Burkard T.R., Planyavsky M., Kaupe I., Breitwieser F.P., Buerckstuemmer T., RA Bennett K.L., Superti-Furga G., Colinge J.; RT "Initial characterization of the human central proteome."; RL BMC Syst. Biol. 5:17-17(2011). RN [13] RP INTERACTION WITH CD81. RX PubMed=21516087; DOI=10.1038/nm.2341; RA Lupberger J., Zeisel M.B., Xiao F., Thumann C., Fofana I., Zona L., RA Davis C., Mee C.J., Turek M., Gorke S., Royer C., Fischer B., Zahid M.N., RA Lavillette D., Fresquet J., Cosset F.L., Rothenberg S.M., Pietschmann T., RA Patel A.H., Pessaux P., Doffoel M., Raffelsberger W., Poch O., RA McKeating J.A., Brino L., Baumert T.F.; RT "EGFR and EphA2 are host factors for hepatitis C virus entry and possible RT targets for antiviral therapy."; RL Nat. Med. 17:589-595(2011). RN [14] RP FUNCTION, AND SUBCELLULAR LOCATION. RX PubMed=23407391; DOI=10.1038/jid.2012.507; RA Kirschner N., Rosenthal R., Furuse M., Moll I., Fromm M., Brandner J.M.; RT "Contribution of tight junction proteins to ion, macromolecule, and water RT barrier in keratinocytes."; RL J. Invest. Dermatol. 133:1161-1169(2013). RN [15] RP FUNCTION (MICROBIAL INFECTION), AND INTERACTION WITH DENGUE VIRUS SMALL RP ENVELOPE PROTEIN M. RX PubMed=24074594; DOI=10.1016/j.virol.2013.08.009; RA Che P., Tang H., Li Q.; RT "The interaction between claudin-1 and dengue viral prM/M protein for its RT entry."; RL Virology 446:303-313(2013). RN [16] RP SUBCELLULAR LOCATION, AND SUBUNIT. RX PubMed=23704991; DOI=10.1371/journal.pone.0064517; RA Bonander N., Jamshad M., Oberthuer D., Clare M., Barwell J., Hu K., RA Farquhar M.J., Stamataki Z., Harris H.J., Dierks K., Dafforn T.R., RA Betzel C., McKeating J.A., Bill R.M.; RT "Production, purification and characterization of recombinant, full-length RT human claudin-1."; RL PLoS ONE 8:E64517-E64517(2013). RN [17] RP INTERACTION WITH HCV HETERODIMER E1/E2 (MICROBIAL INFECTION), AND FUNCTION RP (MICROBIAL INFECTION). RX PubMed=24038151; DOI=10.1002/hep.26733; RA Douam F., Dao Thi V.L., Maurin G., Fresquet J., Mompelat D., Zeisel M.B., RA Baumert T.F., Cosset F.L., Lavillette D.; RT "Critical interaction between E1 and E2 glycoproteins determines binding RT and fusion properties of hepatitis C virus during cell entry."; RL Hepatology 59:776-788(2014). CC -!- FUNCTION: Claudins function as major constituents of the tight junction CC complexes that regulate the permeability of epithelia. While some CC claudin family members play essential roles in the formation of CC impermeable barriers, others mediate the permeability to ions and small CC molecules. Often, several claudin family members are coexpressed and CC interact with each other, and this determines the overall permeability. CC CLDN1 is required to prevent the paracellular diffusion of small CC molecules through tight junctions in the epidermis and is required for CC the normal barrier function of the skin. Required for normal water CC homeostasis and to prevent excessive water loss through the skin, CC probably via an indirect effect on the expression levels of other CC proteins, since CLDN1 itself seems to be dispensable for water barrier CC formation in keratinocyte tight junctions (PubMed:23407391). CC {ECO:0000269|PubMed:23407391}. CC -!- FUNCTION: (Microbial infection) Acts as a co-receptor for hepatitis C CC virus (HCV) in hepatocytes (PubMed:17325668, PubMed:20375010, CC PubMed:24038151). Associates with CD81 and the CLDN1-CD81 receptor CC complex is essential for HCV entry into host cell (PubMed:20375010). CC Acts as a receptor for dengue virus (PubMed:24074594). CC {ECO:0000269|PubMed:17325668, ECO:0000269|PubMed:20375010, CC ECO:0000269|PubMed:24038151, ECO:0000269|PubMed:24074594}. CC -!- SUBUNIT: Homopolymers interact with CLDN3, but not CLDN2, homopolymers. CC Can form homo- and heteropolymers with other claudin family members CC (PubMed:23704991). Directly interacts with TJP1/ZO-1, TJP2/ZO-2 and CC TJP3/ZO-3. Interacts with MPDZ and PATJ (By similarity). Interacts with CC OCLN, CLDN4, CLDN6 and CLDN9 (PubMed:20375010). Interacts with CD81 CC (PubMed:20375010, PubMed:21516087). {ECO:0000250|UniProtKB:O88551, CC ECO:0000269|PubMed:20375010, ECO:0000269|PubMed:21516087, CC ECO:0000269|PubMed:23704991}. CC -!- SUBUNIT: (Microbial infection) Interacts with hepatitis c virus CC heterodimer E1/E2. {ECO:0000269|PubMed:24038151}. CC -!- SUBUNIT: (Microbial infection) Interacts with dengue virus small CC envelope protein M. {ECO:0000269|PubMed:24074594}. CC -!- INTERACTION: CC O95832; Q07108: CD69; NbExp=3; IntAct=EBI-723889, EBI-2836595; CC O95832; P11912: CD79A; NbExp=3; IntAct=EBI-723889, EBI-7797864; CC O95832; Q8TBE3: FNDC9; NbExp=3; IntAct=EBI-723889, EBI-12142257; CC O95832; Q96HJ5: MS4A3; NbExp=3; IntAct=EBI-723889, EBI-12806656; CC O95832; Q7Z7N9: TMEM179B; NbExp=3; IntAct=EBI-723889, EBI-11724423; CC O95832; Q9P0T7: TMEM9; NbExp=3; IntAct=EBI-723889, EBI-723976; CC -!- SUBCELLULAR LOCATION: Cell junction, tight junction CC {ECO:0000269|PubMed:20375010, ECO:0000269|PubMed:23407391}. Cell CC membrane {ECO:0000269|PubMed:23704991}; Multi-pass membrane protein CC {ECO:0000255}. Basolateral cell membrane {ECO:0000269|PubMed:20375010}. CC Note=Associates with CD81 and the CLDN1-CD81 complex localizes to the CC basolateral cell membrane. {ECO:0000269|PubMed:20375010}. CC -!- TISSUE SPECIFICITY: Strongly expressed in liver and kidney. Expressed CC in heart, brain, spleen, lung and testis. {ECO:0000269|PubMed:9931503}. CC -!- DISEASE: Ichthyosis-sclerosing cholangitis neonatal syndrome (NISCH) CC [MIM:607626]: A rare autosomal recessive complex ichthyosis syndrome CC characterized by scalp hypotrichosis, scarring alopecia, mild diffuse CC ichthyosis, sclerosing cholangitis and leukocyte vacuolization. CC {ECO:0000269|PubMed:15521008, ECO:0000269|PubMed:16619213}. Note=The CC disease is caused by variants affecting the gene represented in this CC entry. CC -!- SIMILARITY: Belongs to the claudin family. {ECO:0000305}. CC --------------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution (CC BY 4.0) License CC --------------------------------------------------------------------------- DR EMBL; AF101051; AAD16433.1; -; mRNA. DR EMBL; AF115546; AAD22962.1; -; mRNA. DR EMBL; AF134160; AAF61393.1; -; mRNA. DR EMBL; AF260406; AAK20945.1; -; Genomic_DNA. DR EMBL; AF260403; AAK20945.1; JOINED; Genomic_DNA. DR EMBL; AF260404; AAK20945.1; JOINED; Genomic_DNA. DR EMBL; AF260405; AAK20945.1; JOINED; Genomic_DNA. DR EMBL; AY358652; AAQ89015.1; -; mRNA. DR EMBL; CR457138; CAG33419.1; -; mRNA. DR EMBL; BC012471; AAH12471.1; -; mRNA. DR CCDS; CCDS3295.1; -. DR RefSeq; NP_066924.1; NM_021101.4. DR AlphaFoldDB; O95832; -. DR SMR; O95832; -. DR BioGRID; 114533; 23. DR CORUM; O95832; -. DR IntAct; O95832; 11. DR MINT; O95832; -. DR STRING; 9606.ENSP00000295522; -. DR TCDB; 1.H.1.1.14; the claudin tight junction (claudin1) family. DR GlyGen; O95832; 4 sites. DR iPTMnet; O95832; -. DR PhosphoSitePlus; O95832; -. DR SwissPalm; O95832; -. DR BioMuta; CLDN1; -. DR EPD; O95832; -. DR jPOST; O95832; -. DR MassIVE; O95832; -. DR MaxQB; O95832; -. DR PaxDb; O95832; -. DR PeptideAtlas; O95832; -. DR PRIDE; O95832; -. DR ProteomicsDB; 51077; -. DR Antibodypedia; 3613; 816 antibodies from 43 providers. DR DNASU; 9076; -. DR Ensembl; ENST00000295522.4; ENSP00000295522.3; ENSG00000163347.6. DR GeneID; 9076; -. DR KEGG; hsa:9076; -. DR MANE-Select; ENST00000295522.4; ENSP00000295522.3; NM_021101.5; NP_066924.1. DR UCSC; uc003fsh.4; human. DR CTD; 9076; -. DR DisGeNET; 9076; -. DR GeneCards; CLDN1; -. DR HGNC; HGNC:2032; CLDN1. DR HPA; ENSG00000163347; Tissue enhanced (liver, skin). DR MalaCards; CLDN1; -. DR MIM; 603718; gene. DR MIM; 607626; phenotype. DR neXtProt; NX_O95832; -. DR OpenTargets; ENSG00000163347; -. DR Orphanet; 59303; Neonatal ichthyosis-sclerosing cholangitis syndrome. DR PharmGKB; PA26557; -. DR VEuPathDB; HostDB:ENSG00000163347; -. DR eggNOG; ENOG502R7HF; Eukaryota. DR GeneTree; ENSGT00940000155387; -. DR HOGENOM; CLU_076370_2_3_1; -. DR InParanoid; O95832; -. DR OMA; CCCPQKA; -. DR OrthoDB; 1244077at2759; -. DR PhylomeDB; O95832; -. DR TreeFam; TF331936; -. DR PathwayCommons; O95832; -. DR Reactome; R-HSA-420029; Tight junction interactions. DR SignaLink; O95832; -. DR BioGRID-ORCS; 9076; 15 hits in 1073 CRISPR screens. DR ChiTaRS; CLDN1; human. DR GeneWiki; CLDN1; -. DR GenomeRNAi; 9076; -. DR Pharos; O95832; Tbio. DR PRO; PR:O95832; -. DR Proteomes; UP000005640; Chromosome 3. DR RNAct; O95832; protein. DR Bgee; ENSG00000163347; Expressed in upper leg skin and 139 other tissues. DR ExpressionAtlas; O95832; baseline and differential. DR Genevisible; O95832; HS. DR GO; GO:0016324; C:apical plasma membrane; IEA:Ensembl. DR GO; GO:0016323; C:basolateral plasma membrane; IDA:UniProtKB. DR GO; GO:0005923; C:bicellular tight junction; IDA:UniProtKB. DR GO; GO:0005737; C:cytoplasm; IEA:Ensembl. DR GO; GO:0016021; C:integral component of membrane; TAS:ProtInc. DR GO; GO:0005887; C:integral component of plasma membrane; IMP:UniProtKB. DR GO; GO:0016328; C:lateral plasma membrane; IEA:Ensembl. DR GO; GO:0005886; C:plasma membrane; IDA:ARUK-UCL. DR GO; GO:0032991; C:protein-containing complex; IDA:UniProtKB. DR GO; GO:0070160; C:tight junction; IDA:ARUK-UCL. DR GO; GO:0042802; F:identical protein binding; IPI:UniProtKB. DR GO; GO:0005198; F:structural molecule activity; IEA:InterPro. DR GO; GO:0001618; F:virus receptor activity; IMP:UniProtKB. DR GO; GO:0007568; P:aging; IEA:Ensembl. DR GO; GO:0070830; P:bicellular tight junction assembly; IMP:UniProtKB. DR GO; GO:0016338; P:calcium-independent cell-cell adhesion via plasma membrane cell-adhesion molecules; ISS:UniProtKB. DR GO; GO:0007155; P:cell adhesion; IBA:GO_Central. DR GO; GO:0034331; P:cell junction maintenance; ISS:ARUK-UCL. DR GO; GO:0045216; P:cell-cell junction organization; IMP:MGI. DR GO; GO:1903545; P:cellular response to butyrate; IEA:Ensembl. DR GO; GO:0071346; P:cellular response to interferon-gamma; IEA:Ensembl. DR GO; GO:0071284; P:cellular response to lead ion; IEA:Ensembl. DR GO; GO:0071560; P:cellular response to transforming growth factor beta stimulus; IEA:Ensembl. DR GO; GO:0071356; P:cellular response to tumor necrosis factor; IEA:Ensembl. DR GO; GO:0008065; P:establishment of blood-nerve barrier; IEA:Ensembl. DR GO; GO:0090557; P:establishment of endothelial intestinal barrier; IEA:Ensembl. DR GO; GO:0061436; P:establishment of skin barrier; IMP:UniProtKB. DR GO; GO:0042538; P:hyperosmotic salinity response; IEA:Ensembl. DR GO; GO:0097421; P:liver regeneration; IEA:Ensembl. DR GO; GO:0035633; P:maintenance of blood-brain barrier; NAS:ARUK-UCL. DR GO; GO:1903348; P:positive regulation of bicellular tight junction assembly; IEA:Ensembl. DR GO; GO:0030335; P:positive regulation of cell migration; IMP:ARUK-UCL. DR GO; GO:0060054; P:positive regulation of epithelial cell proliferation involved in wound healing; IMP:ARUK-UCL. DR GO; GO:0090303; P:positive regulation of wound healing; IMP:ARUK-UCL. DR GO; GO:0051259; P:protein complex oligomerization; IDA:ARUK-UCL. DR GO; GO:0071548; P:response to dexamethasone; IEA:Ensembl. DR GO; GO:0045471; P:response to ethanol; IEA:Ensembl. DR GO; GO:0070673; P:response to interleukin-18; IEA:Ensembl. DR GO; GO:0032496; P:response to lipopolysaccharide; IEA:Ensembl. DR GO; GO:0009636; P:response to toxic substance; IEA:Ensembl. DR GO; GO:0061772; P:xenobiotic transport across blood-nerve barrier; IEA:Ensembl. DR InterPro; IPR006187; Claudin. DR InterPro; IPR003548; Claudin1. DR InterPro; IPR017974; Claudin_CS. DR InterPro; IPR004031; PMP22/EMP/MP20/Claudin. DR PANTHER; PTHR12002; PTHR12002; 1. DR PANTHER; PTHR12002:SF92; PTHR12002:SF92; 1. DR Pfam; PF00822; PMP22_Claudin; 1. DR PRINTS; PR01377; CLAUDIN1. DR PROSITE; PS01346; CLAUDIN; 1. PE 1: Evidence at protein level; KW Cell junction; Cell membrane; Disulfide bond; KW Host cell receptor for virus entry; Host-virus interaction; Ichthyosis; KW Membrane; Receptor; Reference proteome; Tight junction; Transmembrane; KW Transmembrane helix. FT CHAIN 1..211 FT /note="Claudin-1" FT /id="PRO_0000144729" FT TOPO_DOM 1..7 FT /note="Cytoplasmic" FT /evidence="ECO:0000250" FT TRANSMEM 8..28 FT /note="Helical" FT /evidence="ECO:0000255" FT TOPO_DOM 29..81 FT /note="Extracellular" FT /evidence="ECO:0000255" FT TRANSMEM 82..102 FT /note="Helical" FT /evidence="ECO:0000255" FT TOPO_DOM 103..115 FT /note="Cytoplasmic" FT /evidence="ECO:0000255" FT TRANSMEM 116..136 FT /note="Helical" FT /evidence="ECO:0000255" FT TOPO_DOM 137..163 FT /note="Extracellular" FT /evidence="ECO:0000255" FT TRANSMEM 164..184 FT /note="Helical" FT /evidence="ECO:0000255" FT TOPO_DOM 185..211 FT /note="Cytoplasmic" FT /evidence="ECO:0000250" FT REGION 192..211 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT REGION 210..211 FT /note="Interactions with TJP1, TJP2, TJP3 and PATJ" FT /evidence="ECO:0000250" FT DISULFID 54..64 FT /evidence="ECO:0000250" FT MUTAGEN 32 FT /note="I->M: Loss of HCV receptor activity. Significant FT loss of interaction with CD81. Reduced interaction with FT OCLN." FT /evidence="ECO:0000269|PubMed:17325668, FT ECO:0000269|PubMed:20375010" FT MUTAGEN 48 FT /note="E->K: Loss of HCV receptor activity. Significant FT loss of interaction with CD81. Reduced interaction with FT OCLN. According to PubMed:17325668 no effect observed on FT HCV infection susceptibility in cell culture." FT /evidence="ECO:0000269|PubMed:17325668, FT ECO:0000269|PubMed:20375010" FT CONFLICT 62 FT /note="I -> V (in Ref. 2; AAD22962)" FT /evidence="ECO:0000305" FT CONFLICT 135 FT /note="V -> A (in Ref. 2; AAD22962)" FT /evidence="ECO:0000305" SQ SEQUENCE 211 AA; 22744 MW; 07269000E6C214F0 CRC64; MANAGLQLLG FILAFLGWIG AIVSTALPQW RIYSYAGDNI VTAQAMYEGL WMSCVSQSTG QIQCKVFDSL LNLSSTLQAT RALMVVGILL GVIAIFVATV GMKCMKCLED DEVQKMRMAV IGGAIFLLAG LAILVATAWY GNRIVQEFYD PMTPVNARYE FGQALFTGWA AASLCLLGGA LLCCSCPRKT TSYPTPRPYP KPAPSSGKDY V //