"""
Various utilities for working with `bx.align.Alignment` objects.
"""

from .chop import chop_list
from .fuse import (
    fuse,
    fuse_list,
    FusingAlignmentWriter,
)
from .thread import get_components_for_species
from .tile import (
    intervals_from_mask,
    tile_interval,
)

__all__ = [
    "chop_list",
    "fuse",
    "fuse_list",
    "FusingAlignmentWriter",
    "get_components_for_species",
    "intervals_from_mask",
    "tile_interval",
]