"""
Tests for `bx.seq.qdna`.
"""

import unittest

from bx.seq import qdna

test_qdna = "test_data/seq_tests/test.qdna"

# Same sequence data as stored in test.qdna

valid_seq = (
    "C7wMwHQrMKqEtSREuUv5nsLinpTS8l7jXpbI7IipvCbHnhOdgx"
    "5tzRgzYl4j85d:xSlvKPEKEIvZkfiX1YPkBi1Ibhfn9fTZd8gG"
    "Wy284hJnwf93W4eHOjeRk7LuVYmH{UTYkYM:b4J4MruMq1ihhv"
    "1Yl5W[xXEmi8[JuuLRgooBpy23PllMuUiIiKVIK5vzhjPPYp5Y"
    "1eqPxo[e5I24KeCdTV94MZWNybUb:McC:1n4Jczk8JqnR4q1gY"
    "HjLS4Bes3s5YvvWdKzS4VrFZy2erhd7YoWRoS[UK8JtSp1{Z1o"
    "5:TpvN8mrmWrghiNw{S6nT8DSfF{1ff6kNGpI:FsZE2RgipTVO"
    "mJN6vPm8MUgNYd7MDBEu37YOPzPjO1dr"
)

valid_seq_len = len(valid_seq)


class QDNATestCase(unittest.TestCase):
    def test_get(self):
        qdnafile = qdna.QdnaFile(open(test_qdna, "rb"))
        check_get(qdnafile, 0, valid_seq_len)
        check_get(qdnafile, 0, 40)
        check_get(qdnafile, valid_seq_len - 40, 40)


def check_get(qdnafile, start, len):
    assert qdnafile.get(start, len) == valid_seq[start : start + len]