#!/usr/bin/env python """Tests for the Gibbs parser """ from __future__ import division from cogent.util.unit_test import TestCase, main import string import re from cogent.motif.util import Motif,Module from cogent.core.moltype import DNA,RNA,PROTEIN from cogent.parse.record import DelimitedSplitter from cogent.parse.record_finder import LabeledRecordFinder from cogent.parse.gibbs import get_sequence_and_motif_blocks, get_sequence_map,\ get_motif_blocks, get_motif_sequences, get_motif_p_value, guess_alphabet,\ build_module_objects, module_ids_to_int, GibbsParser from math import exp __author__ = "Jeremy Widmann" __copyright__ = "Copyright 2007-2012, The Cogent Project" __credits__ = ["Jeremy Widmann"] __license__ = "GPL" __version__ = "1.5.3" __maintainer__ = "Jeremy Widmann" __email__ = "jeremy.widmann@colorado.edu" __status__ = "Production" class GibbsTests(TestCase): """Tests for gibbs parser. """ def setUp(self): """Setup function for gibbs tests. """ self.gibbs_lines = GIBBS_FILE.split('\n') self.sequence_map = {'1':'1091044',\ '10':'135765',\ '11':'1388082',\ '12':'140543',\ '13':'14286173',\ '14':'14578634',\ '15':'14600438',\ '16':'15218394',\ '17':'15597673',\ '18':'15599256',\ '19':'15602312',\ '2':'11467494',\ '20':'15605725',\ '21':'15605963',\ '22':'15609375',\ '23':'15609658',\ '24':'15613511',\ '25':'15614085',\ '26':'15614140',\ '27':'15615431',\ '28':'15643152',\ '29':'15672286',\ '3':'11499727',\ '30':'15790738',\ '31':'15791337',\ '32':'15801846',\ '33':'15805225',\ '34':'15805374',\ '35':'15807234',\ '36':'15826629',\ '37':'15899007',\ '38':'15899339',\ '39':'15964668',\ '4':'1174686',\ '40':'15966937',\ '41':'15988313',\ '42':'16078864',\ '43':'16123427',\ '44':'16125919',\ '45':'16330420',\ '46':'1633495',\ '47':'16501671',\ '48':'1651717',\ '49':'16759994',\ '5':'12044976',\ '50':'16761507',\ '51':'16803644',\ '52':'16804867',\ '53':'17229033',\ '54':'17229859',\ '55':'1729944',\ '56':'17531233',\ '57':'17537401',\ '58':'17547503',\ '59':'18309723',\ '6':'13186328',\ '60':'18313548',\ '61':'18406743',\ '62':'19173077',\ '63':'19554157',\ '64':'19705357',\ '65':'19746502',\ '66':'20092028',\ '67':'20151112',\ '68':'21112072',\ '69':'21222859',\ '7':'13358154',\ '70':'21223405',\ '71':'21227878',\ '72':'21283385',\ '73':'21674812',\ '74':'23098307',\ '75':'2649838',\ '76':'267116',\ '77':'27375582',\ '78':'2822332',\ '79':'30021713',\ '8':'13541053',\ '80':'3261501',\ '81':'3318841',\ '82':'3323237',\ '83':'4155972',\ '84':'4200327',\ '85':'4433065',\ '86':'4704732',\ '87':'4996210',\ '88':'5326864',\ '89':'6322180',\ '9':'13541117',\ '90':'6323138',\ '91':'6687568',\ '92':'6850955',\ '93':'7109697',\ '94':'7290567',\ '95':'9955016',\ '96':'15677788',\ } self.motif_a_lines = """ 10 columns Num Motifs: 27 2, 1 72 klstq ILAISVDSPFSH lqyll 83 1.00 F 11467494 6, 1 66 nlntk IYAISNDSHFVQ knwie 77 1.00 F 13186328 8, 1 68 kknte VISVSEDTVYVH kawvq 79 1.00 F 13541053 9, 1 66 kfkak VIGISVDSPFSL aefak 77 1.00 F 13541117 """.split('\n') self.motif_b_lines = """ MOTIF b 15 columns Num Motifs: 6 2, 1 161 riles IQYVKENPGYACPVNWNFG dqvfy 179 1.00 F 11467494 47, 1 160 lrmvd ALQFHEEHGDVCPAQWEKG kegmn 178 1.00 F 16501671 67, 1 154 rkika AQYVAAHPGEVCPAKWKEG eatla 172 1.00 F 20151112 81, 1 166 lrvvi SLQLTAEKRVATPVDWKDG dsvmv 184 1.00 F 3318841 87, 1 163 lrvlk SLQLTNTHPVATPVNWKEG dkcci 181 1.00 F 4996210 95, 1 160 lrlvq AFQYTDEHGEVCPAGWKPG sdtik 178 1.00 F 9955016 **** * ******* ** * Log Motif portion of MAP for motif b = -187.76179 Log Fragmentation portion of MAP for motif b = -7.77486 ------------------------------------------------------------------------- """.split('\n') def test_get_sequence_and_motif_blocks(self): """get_sequence_and_motif_blocks tests.""" seq_motif_lines = ['before line',\ '=====MAP MAXIMIZATION RESULTS=====',\ 'after line'\ ] exp_seq_block=['before line'] exp_motif_block=['=====MAP MAXIMIZATION RESULTS=====','after line'] seq_block,motif_block = get_sequence_and_motif_blocks(seq_motif_lines) self.assertEqual(seq_block,exp_seq_block) self.assertEqual(motif_block,exp_motif_block) def test_get_sequence_map(self): """get_sequence_map tests.""" sequence_map = get_sequence_map(self.gibbs_lines) self.assertEqual(sequence_map,self.sequence_map) def test_get_motif_blocks(self): """get_motif_blocks tests.""" motif_lines = ['before motifs',\ 'first MOTIF a',\ ' motif a data',\ 'second MOTIF b',\ ' motif b data', 'after motifs' ] exp_motif_blocks = [['first MOTIF a', 'motif a data'],\ ['second MOTIF b', 'motif b data', 'after motifs']] motif_blocks = get_motif_blocks(motif_lines) self.assertEqual(motif_blocks,exp_motif_blocks) def test_get_motif_sequences(self): """get_motif_sequences tests.""" motif_list = get_motif_sequences(self.motif_a_lines) exp_motif_list = [('2', 71, 'ILAISVDSPFSH', 1.0, '1'),\ ('6', 65, 'IYAISNDSHFVQ', 1.0, '1'),\ ('8', 67, 'VISVSEDTVYVH', 1.0, '1'),\ ('9', 65, 'VIGISVDSPFSL', 1.0, '1')] self.assertEqual(motif_list,exp_motif_list) def test_get_motif_p_value(self): """get_motif_p_value tests.""" log_list = ['Column 8 : Sequence Description from Fast A input',\ 'Log Motif portion of MAP for motif a = -469.15170',\ 'Log Fragmentation portion of MAP for motif a = -3.80666',\ ] exp_p_val = exp(-469.15170) self.assertEqual(get_motif_p_value(log_list),exp_p_val) def test_guess_alphabet(self): """guess_alphabet tests.""" motif_list = [('2', 71, 'ILAISVDSPFSH', 1.0, '1'),\ ('6', 65, 'IYAISNDSHFVQ', 1.0, '1'),\ ('8', 67, 'VISVSEDTVYVH', 1.0, '1'),\ ('9', 65, 'VIGISVDSPFSL', 1.0, '1')] alphabet = guess_alphabet(motif_list) self.assertEqual(alphabet,PROTEIN) def test_build_module_objects(self): """build_module_objects tests.""" module = list(build_module_objects(self.motif_b_lines,\ self.sequence_map))[0] exp_module_dict = {('20151112', 153): 'AQYVAAHPGEVCPAKWKEG',\ ('9955016', 159): 'AFQYTDEHGEVCPAGWKPG',\ ('16501671', 159): 'ALQFHEEHGDVCPAQWEKG',\ ('11467494', 160): 'IQYVKENPGYACPVNWNFG',\ ('4996210', 162): 'SLQLTNTHPVATPVNWKEG',\ ('3318841', 165): 'SLQLTAEKRVATPVDWKDG',\ } #module.AlignedSeqs.items() == exp_module_dict.items() for k1,k2 in zip(module.AlignedSeqs.keys(),\ exp_module_dict.keys()): self.assertEqual(k1,k2) v1 = str(module.AlignedSeqs[k1]) v2 = exp_module_dict[k2] self.assertEqual(v1,v2) def test_module_ids_to_int(self): """module_ids_to_int tests.""" module = list(build_module_objects(self.motif_b_lines,\ self.sequence_map))[0] module_ids_to_int([module]) self.assertEqual(module.ID,'0') GIBBS_FILE = """ Gibbs.linux superfamily_aln_gis.fasta 10,15,20,25 5,5,5,5 i = 20 range = 20 high = 11 low = -9 Gibbs 2.06.024 Jul 21 2005 Data file: superfamily_aln_gis.fasta Current directory: /home/widmannj/superfamilies The following options are set: Concentrated Region False Sequence type False Collapsed Alphabet False Pseudocount weight False Use Expectation/Maximization False Don't Xnu sequence False Help flag False Near optimal cutoff False Number of iterations False Don't fragment False Don't use map maximization False Repeat regions False Output file False Informed priors file False Plateau periods False palindromic sequence False Don't Reverse complement False Number of seeds False Seed Value False Pseudosite weight False Suboptimal sampler output False Overlap False Allow width to vary False Wilcoxon signed rank False Sample along length False Output Scan File False Output prior file False Modular Sampler False Ignore Spacing Model False Sample Background False Bkgnd Comp Model False Init from prior False Homologous Seq pairs False Parallel Tempering False Group Sampler False No progress info False Fragment from middle False Verify Mode False Alternate sample on k False No freq. soln. False Calc. def. pseudo wt. False Motif/Recur smpl False Phylogenetic Sampling False Supress Near Opt. False Nearopt display cutoff False site_samp = 0 nMotifLen = 10, 15, 20, 25 nAlphaLen = 20 nNumMotifs = 5 ,5 ,5 ,5 dPseudoCntWt = 0.1 dPseudoSiteWt = 0.8 nMaxIterations = 500 lSeedVal = 1149743202 nPlateauPeriods = 20 nSeeds = 10 nNumMotifTypes = 4 dCutoff = 0.01 dNearOptDispCutoff = 0.5 RevComplement = 0 glOverlapParam = 0 Rcutoff factor = 0.001 Post Plateau Samples = 0 Frag/Shft Per. = 5 Frag width = 15,22,30,37 Sequences to be Searched: _________________________ #1 1091044 #2 11467494 #3 11499727 #4 1174686 #5 12044976 #6 13186328 #7 13358154 #8 13541053 #9 13541117 #10 135765 #11 1388082 #12 140543 #13 14286173 #14 14578634 #15 14600438 #16 15218394 #17 15597673 #18 15599256 #19 15602312 #20 15605725 #21 15605963 #22 15609375 #23 15609658 #24 15613511 #25 15614085 #26 15614140 #27 15615431 #28 15643152 #29 15672286 #30 15790738 #31 15791337 #32 15801846 #33 15805225 #34 15805374 #35 15807234 #36 15826629 #37 15899007 #38 15899339 #39 15964668 #40 15966937 #41 15988313 #42 16078864 #43 16123427 #44 16125919 #45 16330420 #46 1633495 #47 16501671 #48 1651717 #49 16759994 #50 16761507 #51 16803644 #52 16804867 #53 17229033 #54 17229859 #55 1729944 #56 17531233 #57 17537401 #58 17547503 #59 18309723 #60 18313548 #61 18406743 #62 19173077 #63 19554157 #64 19705357 #65 19746502 #66 20092028 #67 20151112 #68 21112072 #69 21222859 #70 21223405 #71 21227878 #72 21283385 #73 21674812 #74 23098307 #75 2649838 #76 267116 #77 27375582 #78 2822332 #79 30021713 #80 3261501 #81 3318841 #82 3323237 #83 4155972 #84 4200327 #85 4433065 #86 4704732 #87 4996210 #88 5326864 #89 6322180 #90 6323138 #91 6687568 #92 6850955 #93 7109697 #94 7290567 #95 9955016 #96 15677788 Processed Sequence Length: 16216 Total sequence length: 16307 Seed = 1149743202 motif A: 5 (+/- 7.88) out of 15393 a = 20; b = 61552; p = 0.000323771 motif B: 5 (+/- 7.87) out of 14888 a = 20; b = 59532; p = 0.000334158 motif C: 5 (+/- 7.86) out of 14383 a = 20; b = 57512; p = 0.000345232 motif D: 5 (+/- 7.85) out of 13878 a = 20; b = 55492; p = 0.000357066 ** 1 ** 1 2 3 4[] motif A cycle 4 AP 0.0 (0 sites) [] motif B cycle 4 AP -567.7 (18 sites) [] motif C cycle 4 AP -1161.7 (31 sites) [] motif D cycle 4 AP -245.0 (4 sites) Total Map : 412.899 Prev: -1.79769e+308 Diff: 1.79769e+308 Motifs: 53 5[] motif A cycle 5 AP -26.6 (1 sites) [] motif B cycle 5 AP -426.5 (17 sites) [] motif C cycle 5 AP -1245.5 (33 sites) [------] motif D cycle 5 AP -210.4 (4 sites) Total Map : 499.315 Prev: 412.899 Diff: 86.4157 Motifs: 55 6[] motif A cycle 6 AP -178.0 (10 sites) [] motif B cycle 6 AP -691.2 (26 sites) [] motif C cycle 6 AP -1189.4 (32 sites) [------] motif D cycle 6 AP -315.4 (6 sites) Total Map : 605.7 Prev: 499.315 Diff: 106.385 Motifs: 74 7[] motif A cycle 7 AP -260.3 (16 sites) [] motif B cycle 7 AP -664.9 (25 sites) [] motif C cycle 7 AP -1189.4 (32 sites) [------] motif D cycle 7 AP -366.4 (7 sites) Total Map : 646.637 Prev: 605.7 Diff: 40.937 Motifs: 80 8[] motif A cycle 8 AP -331.5 (20 sites) [] motif B cycle 8 AP -725.3 (27 sites) [] motif C cycle 8 AP -1141.6 (31 sites) [------] motif D cycle 8 AP -366.4 (7 sites) Total Map : 660.38 Prev: 646.637 Diff: 13.7434 Motifs: 85 9 10[] motif A cycle 10 AP -371.3 (22 sites) [] motif B cycle 10 AP -727.7 (27 sites) [] motif C cycle 10 AP -1245.5 (33 sites) [] motif D cycle 10 AP -346.6 (7 sites) Total Map : 671.561 Prev: 660.38 Diff: 11.181 Motifs: 89 11[] motif A cycle 11 AP -365.7 (22 sites) [] motif B cycle 11 AP -760.1 (28 sites) [] motif C cycle 11 AP -1189.4 (32 sites) [] motif D cycle 11 AP -346.6 (7 sites) Total Map : 685.28 Prev: 671.561 Diff: 13.719 Motifs: 89 12[] motif A cycle 12 AP -446.5 (26 sites) [] motif B cycle 12 AP -725.3 (27 sites) [] motif C cycle 12 AP -1141.6 (31 sites) [] motif D cycle 12 AP -346.6 (7 sites) Total Map : 689.5 Prev: 685.28 Diff: 4.21965 Motifs: 91 13 14 15[] motif A cycle 15 AP -422.8 (26 sites) [] motif B cycle 15 AP -726.1 (27 sites) [] motif C cycle 15 AP -1041.5 (29 sites) [] motif D cycle 15 AP -348.1 (7 sites) Total Map : 714.246 Prev: 689.5 Diff: 24.7462 Motifs: 89 16[] motif A cycle 16 AP -440.3 (27 sites) [] motif B cycle 16 AP -725.3 (27 sites) [] motif C cycle 16 AP -1041.5 (29 sites) [] motif D cycle 16 AP -348.1 (7 sites) Total Map : 717.139 Prev: 714.246 Diff: 2.89264 Motifs: 90 17[] motif A cycle 17 AP -416.4 (26 sites) [] motif B cycle 17 AP -725.3 (27 sites) [] motif C cycle 17 AP -1041.5 (29 sites) [] motif D cycle 17 AP -348.1 (7 sites) Total Map : 723.199 Prev: 717.139 Diff: 6.05975 Motifs: 89 18[] motif A cycle 18 AP -476.5 (29 sites) [] motif B cycle 18 AP -660.6 (25 sites) [] motif C cycle 18 AP -1041.5 (29 sites) [] motif D cycle 18 AP -348.1 (7 sites) Total Map : 725.194 Prev: 723.199 Diff: 1.99565 Motifs: 90 19[] motif A cycle 19 AP -387.7 (25 sites) [] motif B cycle 19 AP -725.3 (27 sites) [] motif C cycle 19 AP -1041.5 (29 sites) [] motif D cycle 19 AP -348.1 (7 sites) Total Map : 730.839 Prev: 725.194 Diff: 5.64428 Motifs: 88 20[] motif A cycle 20 AP -454.8 (28 sites) [] motif B cycle 20 AP -691.2 (26 sites) [] motif C cycle 20 AP -1090.2 (30 sites) [] motif D cycle 20 AP -348.1 (7 sites) Total Map : 740.315 Prev: 730.839 Diff: 9.47605 Motifs: 91 21 22[] motif A cycle 22 AP -347.4 (23 sites) [] motif B cycle 22 AP -691.2 (26 sites) [] motif C cycle 22 AP -1041.0 (29 sites) [] motif D cycle 22 AP -348.1 (7 sites) Total Map : 742.668 Prev: 740.315 Diff: 2.35327 Motifs: 85 23 24[] motif A cycle 24 AP -368.0 (24 sites) [] motif B cycle 24 AP -728.8 (27 sites) [] motif C cycle 24 AP -1041.0 (29 sites) [] motif D cycle 24 AP -348.1 (7 sites) Total Map : 742.863 Prev: 742.668 Diff: 0.19554 Motifs: 87 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 MAX :: 742.863379 (Seed = 1149743202, Iteration = 24 Motif A = 24 Motif B = 27 Motif C = 29 Motif D = 7 ) motif A: 5 (+/- 7.88) out of 15393 a = 20; b = 61552; p = 0.000323771 motif B: 5 (+/- 7.87) out of 14888 a = 20; b = 59532; p = 0.000334158 motif C: 5 (+/- 7.86) out of 14383 a = 20; b = 57512; p = 0.000345232 motif D: 5 (+/- 7.85) out of 13878 a = 20; b = 55492; p = 0.000357066 ** 2 ** 1 2 3 4[] motif A cycle 4 AP -53.8 (3 sites) [] motif B cycle 4 AP -751.2 (33 sites) [] motif C cycle 4 AP -1873.4 (54 sites) [] motif D cycle 4 AP -667.4 (12 sites) Total Map : 1679.61 Prev: -1.79769e+308 Diff: 1.79769e+308 Motifs: 102 5[] motif A cycle 5 AP -51.0 (3 sites) [] motif B cycle 5 AP -684.4 (33 sites) [] motif C cycle 5 AP -1599.1 (54 sites) [------] motif D cycle 5 AP -534.8 (12 sites) Total Map : 2005.21 Prev: 1679.61 Diff: 325.602 Motifs: 102 6[] motif A cycle 6 AP -71.4 (4 sites) [] motif B cycle 6 AP -741.8 (35 sites) [] motif C cycle 6 AP -1599.1 (54 sites) [------] motif D cycle 6 AP -468.9 (11 sites) Total Map : 2020.82 Prev: 2005.21 Diff: 15.6117 Motifs: 104 7[] motif A cycle 7 AP -51.0 (3 sites) [] motif B cycle 7 AP -741.8 (35 sites) [] motif C cycle 7 AP -1599.1 (54 sites) [------] motif D cycle 7 AP -468.9 (11 sites) Total Map : 2022.05 Prev: 2020.82 Diff: 1.23593 Motifs: 103 8 9 10[] motif A cycle 10 AP -48.5 (3 sites) [] motif B cycle 10 AP -741.8 (35 sites) [] motif C cycle 10 AP -1599.1 (54 sites) [] motif D cycle 10 AP -534.8 (12 sites) Total Map : 2026.1 Prev: 2022.05 Diff: 4.04393 Motifs: 104 11 12 13 14 15[] motif A cycle 15 AP -47.4 (3 sites) [] motif B cycle 15 AP -741.8 (35 sites) [] motif C cycle 15 AP -1599.1 (54 sites) [] motif D cycle 15 AP -534.8 (12 sites) Total Map : 2026.45 Prev: 2026.1 Diff: 0.353957 Motifs: 104 16 17 18[] motif A cycle 18 AP -64.6 (4 sites) [] motif B cycle 18 AP -741.8 (35 sites) [] motif C cycle 18 AP -1599.1 (54 sites) [] motif D cycle 18 AP -468.9 (11 sites) Total Map : 2028.63 Prev: 2026.45 Diff: 2.1753 Motifs: 104 19 20 21 22[] motif A cycle 22 AP -64.6 (4 sites) [] motif B cycle 22 AP -850.9 (38 sites) [] motif C cycle 22 AP -1599.1 (54 sites) [] motif D cycle 22 AP -468.9 (11 sites) Total Map : 2029.4 Prev: 2028.63 Diff: 0.769306 Motifs: 107 23 24 25[] motif A cycle 25 AP -64.6 (4 sites) [] motif B cycle 25 AP -850.9 (38 sites) [] motif C cycle 25 AP -1599.1 (54 sites) [] motif D cycle 25 AP -534.8 (12 sites) Total Map : 2029.8 Prev: 2029.4 Diff: 0.400632 Motifs: 108 26 27 28 29 30[] motif A cycle 30 AP -47.5 (3 sites) [] motif B cycle 30 AP -850.9 (38 sites) [] motif C cycle 30 AP -1658.1 (55 sites) [] motif D cycle 30 AP -467.4 (11 sites) Total Map : 2035.48 Prev: 2029.8 Diff: 5.68003 Motifs: 107 31 32 33 34[] motif A cycle 34 AP -47.5 (3 sites) [] motif B cycle 34 AP -816.5 (37 sites) [] motif C cycle 34 AP -1599.1 (54 sites) [] motif D cycle 34 AP -467.4 (11 sites) Total Map : 2036.53 Prev: 2035.48 Diff: 1.0477 Motifs: 105 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 MAX :: 2036.525370 (Seed = 1149743202, Iteration = 34 Motif A = 3 Motif B = 37 Motif C = 54 Motif D = 11 ) motif A: 5 (+/- 7.88) out of 15393 a = 20; b = 61552; p = 0.000323771 motif B: 5 (+/- 7.87) out of 14888 a = 20; b = 59532; p = 0.000334158 motif C: 5 (+/- 7.86) out of 14383 a = 20; b = 57512; p = 0.000345232 motif D: 5 (+/- 7.85) out of 13878 a = 20; b = 55492; p = 0.000357066 ** 3 ** 1 2 3 4[] motif A cycle 4 AP -408.4 (26 sites) [] motif B cycle 4 AP -71.4 (2 sites) [] motif C cycle 4 AP -1871.1 (53 sites) [] motif D cycle 4 AP -174.1 (3 sites) Total Map : 1146.38 Prev: -1.79769e+308 Diff: 1.79769e+308 Motifs: 84 5[] motif A cycle 5 AP -296.5 (26 sites) [] motif B cycle 5 AP -71.4 (2 sites) [] motif C cycle 5 AP -1665.3 (53 sites) [] motif D cycle 5 AP -174.1 (3 sites) Total Map : 1455.53 Prev: 1146.38 Diff: 309.149 Motifs: 84 6[] motif A cycle 6 AP -343.8 (29 sites) [] motif B cycle 6 AP -71.4 (2 sites) [] motif C cycle 6 AP -1696.2 (54 sites) [] motif D cycle 6 AP -174.1 (3 sites) Total Map : 1498.45 Prev: 1455.53 Diff: 42.9205 Motifs: 88 7 8[] motif A cycle 8 AP -384.0 (31 sites) [] motif B cycle 8 AP -71.4 (2 sites) [] motif C cycle 8 AP -1696.2 (54 sites) [] motif D cycle 8 AP -174.1 (3 sites) Total Map : 1502.55 Prev: 1498.45 Diff: 4.0994 Motifs: 90 9[] motif A cycle 9 AP -422.5 (33 sites) [] motif B cycle 9 AP -71.4 (2 sites) [] motif C cycle 9 AP -1696.2 (54 sites) [] motif D cycle 9 AP -174.1 (3 sites) Total Map : 1503.54 Prev: 1502.55 Diff: 0.99024 Motifs: 92 10 11[] motif A cycle 11 AP -419.9 (34 sites) [] motif B cycle 11 AP -71.4 (2 sites) [] motif C cycle 11 AP -1753.3 (55 sites) [] motif D cycle 11 AP -174.1 (3 sites) Total Map : 1516.48 Prev: 1503.54 Diff: 12.938 Motifs: 94 12[] motif A cycle 12 AP -419.9 (34 sites) [] motif B cycle 12 AP -71.4 (2 sites) [] motif C cycle 12 AP -1696.2 (54 sites) [] motif D cycle 12 AP -174.1 (3 sites) Total Map : 1518.67 Prev: 1516.48 Diff: 2.18498 Motifs: 93 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32motif A: 5 (+/- 7.88) out of 15393 a = 20; b = 61552; p = 0.000323771 motif B: 5 (+/- 7.87) out of 14888 a = 20; b = 59532; p = 0.000334158 motif C: 5 (+/- 7.86) out of 14383 a = 20; b = 57512; p = 0.000345232 motif D: 5 (+/- 7.85) out of 13878 a = 20; b = 55492; p = 0.000357066 ** 4 ** 1 2 3 4[] motif A cycle 4 AP 0.0 (0 sites) [] motif B cycle 4 AP -1240.2 (53 sites) [] motif C cycle 4 AP -192.8 (5 sites) [] motif D cycle 4 AP -1139.0 (22 sites) Total Map : 1140.99 Prev: -1.79769e+308 Diff: 1.79769e+308 Motifs: 80 5[] motif A cycle 5 AP -27.5 (1 sites) [] motif B cycle 5 AP -1108.9 (54 sites) [] motif C cycle 5 AP -107.7 (4 sites) [+++] motif D cycle 5 AP -1112.4 (24 sites) Total Map : 1548.32 Prev: 1140.99 Diff: 407.325 Motifs: 83 6 7 8 9[] motif A cycle 9 AP -370.2 (22 sites) [] motif B cycle 9 AP -1103.5 (54 sites) [] motif C cycle 9 AP -1257.6 (33 sites) [+++] motif D cycle 9 AP 0.0 (0 sites) Total Map : 1561.07 Prev: 1548.32 Diff: 12.75 Motifs: 109 10[] motif A cycle 10 AP -434.4 (26 sites) [] motif B cycle 10 AP -1071.7 (53 sites) [] motif C cycle 10 AP -1241.9 (34 sites) [] motif D cycle 10 AP -75.4 (1 sites) Total Map : 1606.41 Prev: 1561.07 Diff: 45.3433 Motifs: 114 11 12[] motif A cycle 12 AP -551.0 (33 sites) [] motif B cycle 12 AP -1144.9 (55 sites) [] motif C cycle 12 AP -1232.3 (34 sites) [] motif D cycle 12 AP 0.0 (0 sites) Total Map : 1660.34 Prev: 1606.41 Diff: 53.9249 Motifs: 122 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32motif A: 5 (+/- 7.88) out of 15393 a = 20; b = 61552; p = 0.000323771 motif B: 5 (+/- 7.87) out of 14888 a = 20; b = 59532; p = 0.000334158 motif C: 5 (+/- 7.86) out of 14383 a = 20; b = 57512; p = 0.000345232 motif D: 5 (+/- 7.85) out of 13878 a = 20; b = 55492; p = 0.000357066 ** 5 ** 1 2 3 4[] motif A cycle 4 AP -44.7 (2 sites) [] motif B cycle 4 AP -1352.6 (53 sites) [] motif C cycle 4 AP -98.3 (2 sites) [] motif D cycle 4 AP -1454.8 (28 sites) Total Map : 989.762 Prev: -1.79769e+308 Diff: 1.79769e+308 Motifs: 85 5[] motif A cycle 5 AP -61.7 (3 sites) [] motif B cycle 5 AP -1093.0 (53 sites) [] motif C cycle 5 AP -82.2 (2 sites) [-----] motif D cycle 5 AP -1250.5 (29 sites) Total Map : 1543.73 Prev: 989.762 Diff: 553.967 Motifs: 87 6[] motif A cycle 6 AP -117.1 (6 sites) [] motif B cycle 6 AP -1118.4 (54 sites) [] motif C cycle 6 AP -82.2 (2 sites) [-----] motif D cycle 6 AP -1228.9 (29 sites) Total Map : 1579.26 Prev: 1543.73 Diff: 35.536 Motifs: 91 7 8 9 10[] motif A cycle 10 AP -119.2 (6 sites) [] motif B cycle 10 AP -1156.4 (55 sites) [] motif C cycle 10 AP -81.4 (2 sites) [] motif D cycle 10 AP -1227.7 (29 sites) Total Map : 1584.6 Prev: 1579.26 Diff: 5.33507 Motifs: 92 11[] motif A cycle 11 AP -117.1 (6 sites) [] motif B cycle 11 AP -1117.5 (54 sites) [] motif C cycle 11 AP -81.4 (2 sites) [] motif D cycle 11 AP -1227.7 (29 sites) Total Map : 1584.81 Prev: 1584.6 Diff: 0.213828 Motifs: 91 12[] motif A cycle 12 AP -117.1 (6 sites) [] motif B cycle 12 AP -1156.4 (55 sites) [] motif C cycle 12 AP -81.4 (2 sites) [] motif D cycle 12 AP -1227.7 (29 sites) Total Map : 1587.59 Prev: 1584.81 Diff: 2.77506 Motifs: 92 13 14 15 16 17 18 19 20[] motif A cycle 20 AP -97.4 (5 sites) [] motif B cycle 20 AP -1156.8 (55 sites) [] motif C cycle 20 AP -79.9 (2 sites) [] motif D cycle 20 AP -1227.7 (29 sites) Total Map : 1587.99 Prev: 1587.59 Diff: 0.397059 Motifs: 91 21 22 23 24 25 26 27 28 29 30[] motif A cycle 30 AP -39.0 (2 sites) [] motif B cycle 30 AP -1156.8 (55 sites) [] motif C cycle 30 AP -80.5 (2 sites) [] motif D cycle 30 AP -1227.7 (29 sites) Total Map : 1588.16 Prev: 1587.99 Diff: 0.175261 Motifs: 88 31 32[] motif A cycle 32 AP -58.3 (3 sites) [] motif B cycle 32 AP -1156.8 (55 sites) [] motif C cycle 32 AP -80.5 (2 sites) [] motif D cycle 32 AP -1227.7 (29 sites) Total Map : 1588.59 Prev: 1588.16 Diff: 0.429544 Motifs: 89 33 34 35 36[] motif A cycle 36 AP -232.0 (13 sites) [] motif B cycle 36 AP -1117.1 (54 sites) [] motif C cycle 36 AP 0.0 (0 sites) [] motif D cycle 36 AP -1227.7 (29 sites) Total Map : 1601.78 Prev: 1588.59 Diff: 13.1946 Motifs: 96 37[] motif A cycle 37 AP -229.0 (13 sites) [] motif B cycle 37 AP -1156.8 (55 sites) [] motif C cycle 37 AP -234.4 (5 sites) [] motif D cycle 37 AP -1227.7 (29 sites) Total Map : 1611.86 Prev: 1601.78 Diff: 10.0767 Motifs: 102 38[] motif A cycle 38 AP -247.4 (14 sites) [] motif B cycle 38 AP -1156.8 (55 sites) [] motif C cycle 38 AP -544.7 (13 sites) [] motif D cycle 38 AP -1227.7 (29 sites) Total Map : 1688.66 Prev: 1611.86 Diff: 76.798 Motifs: 111 39 40[] motif A cycle 40 AP -199.9 (12 sites) [] motif B cycle 40 AP -1156.8 (55 sites) [] motif C cycle 40 AP -692.6 (17 sites) [] motif D cycle 40 AP -1227.7 (29 sites) Total Map : 1767.8 Prev: 1688.66 Diff: 79.137 Motifs: 113 41[] motif A cycle 41 AP -311.4 (18 sites) [] motif B cycle 41 AP -1156.8 (55 sites) [] motif C cycle 41 AP -784.5 (19 sites) [] motif D cycle 41 AP -1227.7 (29 sites) Total Map : 1785.93 Prev: 1767.8 Diff: 18.1288 Motifs: 121 42 43 44 45 46[] motif A cycle 46 AP -483.4 (27 sites) [] motif B cycle 46 AP -1120.7 (54 sites) [] motif C cycle 46 AP -928.7 (22 sites) [] motif D cycle 46 AP -1227.7 (29 sites) Total Map : 1799.6 Prev: 1785.93 Diff: 13.6793 Motifs: 132 47[] motif A cycle 47 AP -529.5 (29 sites) [] motif B cycle 47 AP -1156.8 (55 sites) [] motif C cycle 47 AP -880.8 (21 sites) [] motif D cycle 47 AP -1227.7 (29 sites) Total Map : 1804.67 Prev: 1799.6 Diff: 5.06939 Motifs: 134 48[] motif A cycle 48 AP -459.6 (26 sites) [] motif B cycle 48 AP -1118.4 (54 sites) [] motif C cycle 48 AP -876.6 (21 sites) [] motif D cycle 48 AP -1227.7 (29 sites) Total Map : 1808.9 Prev: 1804.67 Diff: 4.22417 Motifs: 130 49 50 51 52[] motif A cycle 52 AP -487.1 (27 sites) [] motif B cycle 52 AP -1156.8 (55 sites) [] motif C cycle 52 AP -914.8 (22 sites) [] motif D cycle 52 AP -1227.7 (29 sites) Total Map : 1817.39 Prev: 1808.9 Diff: 8.49225 Motifs: 133 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72motif A: 5 (+/- 7.88) out of 15393 a = 20; b = 61552; p = 0.000323771 motif B: 5 (+/- 7.87) out of 14888 a = 20; b = 59532; p = 0.000334158 motif C: 5 (+/- 7.86) out of 14383 a = 20; b = 57512; p = 0.000345232 motif D: 5 (+/- 7.85) out of 13878 a = 20; b = 55492; p = 0.000357066 ** 6 ** 1 2 3 4[] motif A cycle 4 AP -67.0 (3 sites) [] motif B cycle 4 AP -1223.6 (54 sites) [] motif C cycle 4 AP -145.7 (3 sites) [] motif D cycle 4 AP -224.8 (4 sites) Total Map : 981.16 Prev: -1.79769e+308 Diff: 1.79769e+308 Motifs: 64 5[] motif A cycle 5 AP -37.3 (2 sites) [] motif B cycle 5 AP -989.0 (54 sites) [] motif C cycle 5 AP -304.6 (8 sites) [----] motif D cycle 5 AP -187.9 (4 sites) Total Map : 1275.57 Prev: 981.16 Diff: 294.41 Motifs: 68 6[] motif A cycle 6 AP -81.8 (5 sites) [] motif B cycle 6 AP -989.0 (54 sites) [] motif C cycle 6 AP -590.1 (16 sites) [----] motif D cycle 6 AP -358.3 (7 sites) Total Map : 1416.85 Prev: 1275.57 Diff: 141.283 Motifs: 82 7[] motif A cycle 7 AP -96.8 (6 sites) [] motif B cycle 7 AP -989.0 (54 sites) [] motif C cycle 7 AP -633.2 (17 sites) [----] motif D cycle 7 AP -358.3 (7 sites) Total Map : 1424.61 Prev: 1416.85 Diff: 7.75982 Motifs: 84 8 9 10[] motif A cycle 10 AP -91.9 (6 sites) [] motif B cycle 10 AP -989.0 (54 sites) [] motif C cycle 10 AP -674.5 (18 sites) [-] motif D cycle 10 AP -337.3 (7 sites) Total Map : 1448.23 Prev: 1424.61 Diff: 23.6156 Motifs: 85 11[] motif A cycle 11 AP -91.9 (6 sites) [] motif B cycle 11 AP -989.0 (54 sites) [] motif C cycle 11 AP -667.6 (18 sites) [-] motif D cycle 11 AP -337.3 (7 sites) Total Map : 1456.26 Prev: 1448.23 Diff: 8.03531 Motifs: 85 12 13[] motif A cycle 13 AP -114.3 (7 sites) [] motif B cycle 13 AP -989.0 (54 sites) [] motif C cycle 13 AP -854.9 (22 sites) [-] motif D cycle 13 AP -337.3 (7 sites) Total Map : 1463.23 Prev: 1456.26 Diff: 6.96803 Motifs: 90 14[] motif A cycle 14 AP -137.2 (8 sites) [] motif B cycle 14 AP -989.0 (54 sites) [] motif C cycle 14 AP -803.3 (21 sites) [-] motif D cycle 14 AP -337.3 (7 sites) Total Map : 1465.75 Prev: 1463.23 Diff: 2.52048 Motifs: 90 15[] motif A cycle 15 AP -134.8 (8 sites) [] motif B cycle 15 AP -989.0 (54 sites) [] motif C cycle 15 AP -803.3 (21 sites) [+] motif D cycle 15 AP -336.6 (7 sites) Total Map : 1470.32 Prev: 1465.75 Diff: 4.56864 Motifs: 90 16[] motif A cycle 16 AP -108.3 (7 sites) [] motif B cycle 16 AP -989.0 (54 sites) [] motif C cycle 16 AP -850.5 (22 sites) [+] motif D cycle 16 AP -411.5 (8 sites) Total Map : 1480.76 Prev: 1470.32 Diff: 10.4373 Motifs: 91 17 18 19 20[] motif A cycle 20 AP -128.6 (8 sites) [] motif B cycle 20 AP -989.0 (54 sites) [] motif C cycle 20 AP -940.1 (24 sites) [--] motif D cycle 20 AP -405.0 (8 sites) Total Map : 1500.43 Prev: 1480.76 Diff: 19.6736 Motifs: 94 21[] motif A cycle 21 AP -108.3 (7 sites) [] motif B cycle 21 AP -989.0 (54 sites) [] motif C cycle 21 AP -940.1 (24 sites) [--] motif D cycle 21 AP -405.0 (8 sites) Total Map : 1501.82 Prev: 1500.43 Diff: 1.38679 Motifs: 93 22[] motif A cycle 22 AP -108.3 (7 sites) [] motif B cycle 22 AP -989.0 (54 sites) [] motif C cycle 22 AP -986.8 (25 sites) [--] motif D cycle 22 AP -405.0 (8 sites) Total Map : 1503.53 Prev: 1501.82 Diff: 1.70712 Motifs: 94 23 24 25 26 27[] motif A cycle 27 AP -128.6 (8 sites) [] motif B cycle 27 AP -989.0 (54 sites) [] motif C cycle 27 AP -939.0 (24 sites) [] motif D cycle 27 AP -404.6 (8 sites) Total Map : 1504 Prev: 1503.53 Diff: 0.475394 Motifs: 94 28[] motif A cycle 28 AP -108.3 (7 sites) [] motif B cycle 28 AP -989.0 (54 sites) [] motif C cycle 28 AP -939.0 (24 sites) [] motif D cycle 28 AP -404.6 (8 sites) Total Map : 1505.38 Prev: 1504 Diff: 1.37798 Motifs: 93 29 30 31 32 33 34 35[] motif A cycle 35 AP -142.7 (9 sites) [] motif B cycle 35 AP -989.0 (54 sites) [] motif C cycle 35 AP -889.8 (23 sites) [] motif D cycle 35 AP -471.7 (9 sites) Total Map : 1508.79 Prev: 1505.38 Diff: 3.40696 Motifs: 95 36 37[] motif A cycle 37 AP -159.8 (10 sites) [] motif B cycle 37 AP -989.0 (54 sites) [] motif C cycle 37 AP -939.0 (24 sites) [] motif D cycle 37 AP -404.6 (8 sites) Total Map : 1514.12 Prev: 1508.79 Diff: 5.3377 Motifs: 96 38[] motif A cycle 38 AP -159.8 (10 sites) [] motif B cycle 38 AP -989.0 (54 sites) [] motif C cycle 38 AP -986.4 (25 sites) [] motif D cycle 38 AP -404.6 (8 sites) Total Map : 1514.79 Prev: 1514.12 Diff: 0.670946 Motifs: 97 39 40[] motif A cycle 40 AP -175.3 (11 sites) [] motif B cycle 40 AP -989.0 (54 sites) [] motif C cycle 40 AP -939.0 (24 sites) [] motif D cycle 40 AP -404.6 (8 sites) Total Map : 1518.92 Prev: 1514.79 Diff: 4.12608 Motifs: 97 41[] motif A cycle 41 AP -151.0 (10 sites) [] motif B cycle 41 AP -989.0 (54 sites) [] motif C cycle 41 AP -937.3 (24 sites) [] motif D cycle 41 AP -404.6 (8 sites) Total Map : 1522.39 Prev: 1518.92 Diff: 3.46783 Motifs: 96 42[] motif A cycle 42 AP -132.3 (9 sites) [] motif B cycle 42 AP -989.0 (54 sites) [] motif C cycle 42 AP -986.4 (25 sites) [] motif D cycle 42 AP -404.6 (8 sites) Total Map : 1523.36 Prev: 1522.39 Diff: 0.973725 Motifs: 96 43 44 45 46 47 48 49 50[] motif A cycle 50 AP -151.0 (10 sites) [] motif B cycle 50 AP -989.0 (54 sites) [] motif C cycle 50 AP -986.4 (25 sites) [] motif D cycle 50 AP -404.6 (8 sites) Total Map : 1524.12 Prev: 1523.36 Diff: 0.756895 Motifs: 97 51 52 53 54[] motif A cycle 54 AP -169.9 (11 sites) [] motif B cycle 54 AP -989.0 (54 sites) [] motif C cycle 54 AP -939.0 (24 sites) [] motif D cycle 54 AP -404.6 (8 sites) Total Map : 1524.49 Prev: 1524.12 Diff: 0.371963 Motifs: 97 55 56 57 58 59 60 61 62 63 64 65[] motif A cycle 65 AP -151.0 (10 sites) [] motif B cycle 65 AP -989.0 (54 sites) [] motif C cycle 65 AP -986.8 (25 sites) [] motif D cycle 65 AP -402.9 (8 sites) Total Map : 1529.11 Prev: 1524.49 Diff: 4.61554 Motifs: 97 66[] motif A cycle 66 AP -169.9 (11 sites) [] motif B cycle 66 AP -989.0 (54 sites) [] motif C cycle 66 AP -986.8 (25 sites) [] motif D cycle 66 AP -402.9 (8 sites) Total Map : 1530.16 Prev: 1529.11 Diff: 1.05073 Motifs: 98 67 68 69 70[] motif A cycle 70 AP -169.9 (11 sites) [] motif B cycle 70 AP -989.0 (54 sites) [] motif C cycle 70 AP -986.4 (25 sites) [] motif D cycle 70 AP -402.9 (8 sites) Total Map : 1532.06 Prev: 1530.16 Diff: 1.89983 Motifs: 98 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90motif A: 5 (+/- 7.88) out of 15393 a = 20; b = 61552; p = 0.000323771 motif B: 5 (+/- 7.87) out of 14888 a = 20; b = 59532; p = 0.000334158 motif C: 5 (+/- 7.86) out of 14383 a = 20; b = 57512; p = 0.000345232 motif D: 5 (+/- 7.85) out of 13878 a = 20; b = 55492; p = 0.000357066 ** 7 ** 1 2 3 4[] motif A cycle 4 AP -201.0 (12 sites) [] motif B cycle 4 AP -113.6 (3 sites) [] motif C cycle 4 AP -930.1 (23 sites) [] motif D cycle 4 AP -2959.1 (54 sites) Total Map : 903.055 Prev: -1.79769e+308 Diff: 1.79769e+308 Motifs: 92 5[] motif A cycle 5 AP -150.4 (11 sites) [] motif B cycle 5 AP -117.6 (4 sites) [] motif C cycle 5 AP -871.9 (23 sites) [] motif D cycle 5 AP -2452.5 (52 sites) Total Map : 1437.59 Prev: 903.055 Diff: 534.536 Motifs: 90 6[] motif A cycle 6 AP -185.8 (13 sites) [] motif B cycle 6 AP -63.1 (2 sites) [] motif C cycle 6 AP -817.6 (22 sites) [] motif D cycle 6 AP -2556.7 (54 sites) Total Map : 1469.43 Prev: 1437.59 Diff: 31.8425 Motifs: 91 7[] motif A cycle 7 AP -185.8 (13 sites) [] motif B cycle 7 AP -63.1 (2 sites) [] motif C cycle 7 AP -817.6 (22 sites) [] motif D cycle 7 AP -2469.2 (53 sites) Total Map : 1490.24 Prev: 1469.43 Diff: 20.8077 Motifs: 90 8 9 10[] motif A cycle 10 AP -185.8 (13 sites) [] motif B cycle 10 AP -60.9 (2 sites) [] motif C cycle 10 AP -923.4 (24 sites) [--] motif D cycle 10 AP -2454.7 (53 sites) Total Map : 1505.14 Prev: 1490.24 Diff: 14.9023 Motifs: 92 11 12 13[] motif A cycle 13 AP -185.8 (13 sites) [] motif B cycle 13 AP -60.9 (2 sites) [] motif C cycle 13 AP -817.6 (22 sites) [--] motif D cycle 13 AP -2454.7 (53 sites) Total Map : 1505.52 Prev: 1505.14 Diff: 0.372181 Motifs: 90 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33motif A: 5 (+/- 7.88) out of 15393 a = 20; b = 61552; p = 0.000323771 motif B: 5 (+/- 7.87) out of 14888 a = 20; b = 59532; p = 0.000334158 motif C: 5 (+/- 7.86) out of 14383 a = 20; b = 57512; p = 0.000345232 motif D: 5 (+/- 7.85) out of 13878 a = 20; b = 55492; p = 0.000357066 ** 8 ** 1 2 3 4[] motif A cycle 4 AP -56.8 (3 sites) [] motif B cycle 4 AP -594.9 (23 sites) [] motif C cycle 4 AP -194.1 (4 sites) [] motif D cycle 4 AP -367.4 (6 sites) Total Map : 271.959 Prev: -1.79769e+308 Diff: 1.79769e+308 Motifs: 36 5[] motif A cycle 5 AP -46.0 (3 sites) [] motif B cycle 5 AP -486.2 (21 sites) [] motif C cycle 5 AP -979.1 (29 sites) [-----] motif D cycle 5 AP -276.6 (6 sites) Total Map : 840.305 Prev: 271.959 Diff: 568.345 Motifs: 59 6[] motif A cycle 6 AP -46.0 (3 sites) [] motif B cycle 6 AP -481.1 (20 sites) [] motif C cycle 6 AP -1396.9 (39 sites) [-----] motif D cycle 6 AP -486.7 (10 sites) Total Map : 950.671 Prev: 840.305 Diff: 110.367 Motifs: 72 7 8[] motif A cycle 8 AP -46.0 (3 sites) [] motif B cycle 8 AP -316.3 (10 sites) [] motif C cycle 8 AP -3004.0 (74 sites) [-----] motif D cycle 8 AP -552.2 (11 sites) Total Map : 954.552 Prev: 950.671 Diff: 3.88022 Motifs: 98 9 10[] motif A cycle 10 AP -46.5 (3 sites) [] motif B cycle 10 AP -243.9 (8 sites) [] motif C cycle 10 AP -2992.1 (74 sites) [-] motif D cycle 10 AP -530.1 (11 sites) Total Map : 1001.93 Prev: 954.552 Diff: 47.3832 Motifs: 96 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30motif A: 5 (+/- 7.88) out of 15393 a = 20; b = 61552; p = 0.000323771 motif B: 5 (+/- 7.87) out of 14888 a = 20; b = 59532; p = 0.000334158 motif C: 5 (+/- 7.86) out of 14383 a = 20; b = 57512; p = 0.000345232 motif D: 5 (+/- 7.85) out of 13878 a = 20; b = 55492; p = 0.000357066 ** 9 ** 1 2 3 4[] motif A cycle 4 AP -86.2 (4 sites) [] motif B cycle 4 AP -122.1 (3 sites) [] motif C cycle 4 AP -2149.3 (51 sites) [] motif D cycle 4 AP -234.1 (4 sites) Total Map : 509.201 Prev: -1.79769e+308 Diff: 1.79769e+308 Motifs: 62 5[] motif A cycle 5 AP -66.9 (4 sites) [] motif B cycle 5 AP -75.7 (3 sites) [] motif C cycle 5 AP -1697.1 (50 sites) [] motif D cycle 5 AP -461.9 (9 sites) Total Map : 1092.03 Prev: 509.201 Diff: 582.825 Motifs: 66 6[] motif A cycle 6 AP -311.5 (21 sites) [] motif B cycle 6 AP -96.6 (3 sites) [] motif C cycle 6 AP -1790.1 (52 sites) [] motif D cycle 6 AP -742.9 (14 sites) Total Map : 1213.73 Prev: 1092.03 Diff: 121.707 Motifs: 90 7[] motif A cycle 7 AP -368.8 (24 sites) [] motif B cycle 7 AP -112.7 (4 sites) [] motif C cycle 7 AP -1737.2 (51 sites) [] motif D cycle 7 AP -1041.8 (19 sites) Total Map : 1253.72 Prev: 1213.73 Diff: 39.9908 Motifs: 98 8 9 10[] motif A cycle 10 AP -481.8 (31 sites) [] motif B cycle 10 AP -58.0 (2 sites) [] motif C cycle 10 AP -1790.1 (52 sites) [] motif D cycle 10 AP -1237.8 (23 sites) Total Map : 1285.2 Prev: 1253.72 Diff: 31.4769 Motifs: 108 11[] motif A cycle 11 AP -489.8 (32 sites) [] motif B cycle 11 AP -99.2 (3 sites) [] motif C cycle 11 AP -1790.1 (52 sites) [] motif D cycle 11 AP -1417.6 (26 sites) Total Map : 1303.74 Prev: 1285.2 Diff: 18.5344 Motifs: 113 12[] motif A cycle 12 AP -492.2 (32 sites) [] motif B cycle 12 AP -58.0 (2 sites) [] motif C cycle 12 AP -1842.5 (53 sites) [] motif D cycle 12 AP -1419.1 (26 sites) Total Map : 1309.87 Prev: 1303.74 Diff: 6.13088 Motifs: 113 13 14 15 16 17[] motif A cycle 17 AP -469.5 (31 sites) [] motif B cycle 17 AP -58.7 (2 sites) [] motif C cycle 17 AP -1790.1 (52 sites) [] motif D cycle 17 AP -1419.1 (26 sites) Total Map : 1311.38 Prev: 1309.87 Diff: 1.50905 Motifs: 111 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37motif A: 5 (+/- 7.88) out of 15393 a = 20; b = 61552; p = 0.000323771 motif B: 5 (+/- 7.87) out of 14888 a = 20; b = 59532; p = 0.000334158 motif C: 5 (+/- 7.86) out of 14383 a = 20; b = 57512; p = 0.000345232 motif D: 5 (+/- 7.85) out of 13878 a = 20; b = 55492; p = 0.000357066 ** 10 ** 1 2 3 4[] motif A cycle 4 AP -374.5 (22 sites) [] motif B cycle 4 AP -74.4 (2 sites) [] motif C cycle 4 AP -1774.4 (54 sites) [] motif D cycle 4 AP -1794.7 (36 sites) Total Map : 1821.24 Prev: -1.79769e+308 Diff: 1.79769e+308 Motifs: 114 5[] motif A cycle 5 AP -364.1 (22 sites) [] motif B cycle 5 AP -74.4 (2 sites) [] motif C cycle 5 AP -1607.6 (54 sites) [++] motif D cycle 5 AP -1738.3 (36 sites) Total Map : 2005.44 Prev: 1821.24 Diff: 184.204 Motifs: 114 6[] motif A cycle 6 AP -355.0 (22 sites) [] motif B cycle 6 AP -74.4 (2 sites) [] motif C cycle 6 AP -1607.6 (54 sites) [++] motif D cycle 6 AP -1800.3 (37 sites) Total Map : 2026.99 Prev: 2005.44 Diff: 21.5427 Motifs: 115 7[] motif A cycle 7 AP -305.7 (20 sites) [] motif B cycle 7 AP -74.4 (2 sites) [] motif C cycle 7 AP -1607.6 (54 sites) [++] motif D cycle 7 AP -1800.3 (37 sites) Total Map : 2042.47 Prev: 2026.99 Diff: 15.4851 Motifs: 113 8[] motif A cycle 8 AP -360.2 (23 sites) [] motif B cycle 8 AP -74.4 (2 sites) [] motif C cycle 8 AP -1607.6 (54 sites) [++] motif D cycle 8 AP -1734.6 (36 sites) Total Map : 2049.89 Prev: 2042.47 Diff: 7.41789 Motifs: 115 9 10[] motif A cycle 10 AP -321.7 (22 sites) [] motif B cycle 10 AP -74.4 (2 sites) [] motif C cycle 10 AP -1607.6 (54 sites) [] motif D cycle 10 AP -1800.3 (37 sites) Total Map : 2065.41 Prev: 2049.89 Diff: 15.5161 Motifs: 115 11[] motif A cycle 11 AP -345.0 (23 sites) [] motif B cycle 11 AP -74.4 (2 sites) [] motif C cycle 11 AP -1607.6 (54 sites) [] motif D cycle 11 AP -1800.3 (37 sites) Total Map : 2068.72 Prev: 2065.41 Diff: 3.31307 Motifs: 116 12 13 14 15 16[] motif A cycle 16 AP -467.4 (29 sites) [] motif B cycle 16 AP -74.4 (2 sites) [] motif C cycle 16 AP -1607.6 (54 sites) [] motif D cycle 16 AP -1800.3 (37 sites) Total Map : 2074.61 Prev: 2068.72 Diff: 5.89359 Motifs: 122 17[] motif A cycle 17 AP -469.2 (29 sites) [] motif B cycle 17 AP -74.4 (2 sites) [] motif C cycle 17 AP -1607.6 (54 sites) [] motif D cycle 17 AP -1800.3 (37 sites) Total Map : 2075.76 Prev: 2074.61 Diff: 1.14881 Motifs: 122 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32[] motif A cycle 32 AP -377.5 (25 sites) [] motif B cycle 32 AP -107.2 (3 sites) [] motif C cycle 32 AP -1607.6 (54 sites) [] motif D cycle 32 AP -1800.3 (37 sites) Total Map : 2090.08 Prev: 2075.76 Diff: 14.3209 Motifs: 119 33 34[] motif A cycle 34 AP -398.0 (26 sites) [] motif B cycle 34 AP -107.2 (3 sites) [] motif C cycle 34 AP -1607.6 (54 sites) [] motif D cycle 34 AP -1800.3 (37 sites) Total Map : 2090.33 Prev: 2090.08 Diff: 0.249073 Motifs: 120 35[] motif A cycle 35 AP -377.0 (25 sites) [] motif B cycle 35 AP -89.9 (3 sites) [] motif C cycle 35 AP -1607.6 (54 sites) [] motif D cycle 35 AP -1800.3 (37 sites) Total Map : 2095.44 Prev: 2090.33 Diff: 5.10984 Motifs: 119 36[] motif A cycle 36 AP -377.0 (25 sites) [] motif B cycle 36 AP -159.5 (5 sites) [] motif C cycle 36 AP -1607.6 (54 sites) [] motif D cycle 36 AP -1800.3 (37 sites) Total Map : 2099.24 Prev: 2095.44 Diff: 3.79902 Motifs: 121 37[] motif A cycle 37 AP -377.0 (25 sites) [] motif B cycle 37 AP -160.6 (5 sites) [] motif C cycle 37 AP -1607.6 (54 sites) [] motif D cycle 37 AP -1800.3 (37 sites) Total Map : 2102.31 Prev: 2099.24 Diff: 3.07348 Motifs: 121 38 39 40 41[] motif A cycle 41 AP -356.4 (24 sites) [] motif B cycle 41 AP -160.7 (5 sites) [] motif C cycle 41 AP -1607.6 (54 sites) [] motif D cycle 41 AP -1800.3 (37 sites) Total Map : 2103.18 Prev: 2102.31 Diff: 0.864532 Motifs: 120 42 43[] motif A cycle 43 AP -377.0 (25 sites) [] motif B cycle 43 AP -160.7 (5 sites) [] motif C cycle 43 AP -1607.6 (54 sites) [] motif D cycle 43 AP -1800.3 (37 sites) Total Map : 2103.36 Prev: 2103.18 Diff: 0.182404 Motifs: 121 44 45[] motif A cycle 45 AP -422.3 (27 sites) [] motif B cycle 45 AP -229.0 (7 sites) [] motif C cycle 45 AP -1607.6 (54 sites) [] motif D cycle 45 AP -1800.3 (37 sites) Total Map : 2104.94 Prev: 2103.36 Diff: 1.57855 Motifs: 125 46[] motif A cycle 46 AP -422.3 (27 sites) [] motif B cycle 46 AP -187.8 (6 sites) [] motif C cycle 46 AP -1607.6 (54 sites) [] motif D cycle 46 AP -1668.3 (35 sites) Total Map : 2109.23 Prev: 2104.94 Diff: 4.29029 Motifs: 122 47[] motif A cycle 47 AP -446.7 (28 sites) [] motif B cycle 47 AP -187.8 (6 sites) [] motif C cycle 47 AP -1607.6 (54 sites) [] motif D cycle 47 AP -1668.3 (35 sites) Total Map : 2109.87 Prev: 2109.23 Diff: 0.644012 Motifs: 123 48 49[] motif A cycle 49 AP -490.2 (30 sites) [] motif B cycle 49 AP -187.8 (6 sites) [] motif C cycle 49 AP -1607.6 (54 sites) [] motif D cycle 49 AP -1668.3 (35 sites) Total Map : 2110.99 Prev: 2109.87 Diff: 1.11211 Motifs: 125 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 MAX :: 2110.985589 (Seed = 1149743202, Iteration = 49 Motif A = 30 Motif B = 6 Motif C = 54 Motif D = 35 ) Max subopt MAP found on seed 10 ======================== NEAR OPTIMAL RESULTS ======================== ====================================================================== MAP = 584 maybe = 588 discard = 64640 Max set 2111.157969 at 4 5 10 15 20 25 30 35 40 45 50 55 60 65 70 75 80 85 90 95 100 105 110 115 120 125 130 135 140 145 150 155 160 165 170 175 180 185 190 195 200 205 210 215 220 225 230 235 240 245 250 255 260 265 270 275 280 285 290 295 300 305 310 315 320 325 330 335 340 345 350 355 360 365 370 375 380 385 390 395 400 405 410 415 420 425 430 435 440 445 450 455 460 465 470 475 480 485 490 495 500 ============================================================= ====== Results by Sequence ===== ============================================================= 1, 1, 3 37 ldfdk EFRDKTVVIVAIPGAFTPTCTANHIPPF vekft 64 1.00 F 1091044 1, 2, 0 79 agvda VIVLSANDPFVQ safgk 90 1.00 F 1091044 2, 1, 3 32 irlsd YRGKKYVILFFYPANFTAISPTELMLLS drise 59 1.00 F 11467494 2, 2, 0 72 klstq ILAISVDSPFSH lqyll 83 1.00 F 11467494 2, 3, 1 161 riles IQYVKENPGYACPVNWNFG dqvfy 179 1.00 F 11467494 3, 1, 2 17 viqsd KLVVVDFYADWCMPCRYISPILEKL skeyn 41 1.00 F 11499727 4, 1, 2 22 llntt QYVVADFYADWCGPCKAIAPMYAQF aktfs 46 1.00 F 1174686 5, 1, 2 19 ifsak KNVIVDFWAAWCGPCKLTSPEFQKA adefs 43 1.00 F 12044976 6, 1, 3 26 eikei DLKSNWNVFFFYPYSYSFICPLELKNIS nkike 53 1.00 F 13186328 6, 2, 0 66 nlntk IYAISNDSHFVQ knwie 77 1.00 F 13186328 7, 1, 2 21 kenhs KPILIDFYADWCPPCRMLIPVLDSI ekkhg 45 1.00 F 13358154 8, 1, 3 28 kirls SYRGKWVVLFFYPADFTFVCPTEVEGFA edyek 55 1.00 F 13541053 8, 2, 0 68 kknte VISVSEDTVYVH kawvq 79 1.00 F 13541053 9, 1, 3 26 mrkls EFRGQNVVLAFFPGAFTSVCTKEMCTFR dsman 53 1.00 F 13541117 9, 2, 0 66 kfkak VIGISVDSPFSL aefak 77 1.00 F 13541117 10, 1, 2 17 aetse GVVLADFWAPWCGPCKMIAPVLEEL dqemg 41 1.00 F 135765 11, 1, 2 29 akesn KLIVIDFTASWCPPCRMIAPIFNDL akkfm 53 1.00 F 1388082 12, 1, 2 44 likqn DKLVIDFYATWCGPCKMMQPHLTKL iqayp 68 1.00 F 140543 13, 1, 3 25 melpd EFEGKWFILFSHPADFTPVCTTEFVAFQ evype 52 1.00 F 14286173 13, 2, 0 65 eldce LVGLSVDQVFSH ikwie 76 1.00 F 14286173 14, 1, 2 80 selrg KVVMLQFTASWCGVCRKEMPFIEKD iwlkh 104 1.00 F 14578634 15, 1, 3 25 kirls DFRGRIVVLYFYPRAMTPGCTREGVRFN ellde 52 1.00 F 14600438 15, 2, 0 65 klgav VIGVSTDSVEKN rkfae 76 1.00 F 14600438 16, 1, 2 23 lqnsd KPVLVDFYATWCGPCQLMVPILNEV setlk 47 1.00 F 15218394 17, 1, 2 157 adfrg RPLVINLWASWCPPCRREMPVLQQA qaenp 181 1.00 F 15597673 18, 1, 2 26 ensfh KPVLVDFWADWCAPCKALMPLLAQI aesyq 50 1.00 F 15599256 19, 1, 2 67 negkg KTILLNFWSETCGVCIAELKTFEQL lqsyp 91 1.00 F 15602312 20, 1, 2 61 eefkg KVLLINFWATWCPPCKEEIPMFKEI yekyr 85 1.00 F 15605725 21, 1, 0 80 megvd VTVVSMDLPFAQ krfce 91 1.00 F 15605963 22, 1, 3 26 vtlrg YRGAKNVLLVFFPLAFTGICQGELDQLR dhlpe 53 1.00 F 15609375 23, 1, 3 30 nvsla DYRGRRVIVYFYPAASTPGCTKQACDFR dnlgd 57 1.00 F 15609658 23, 2, 0 70 tagln VVGISPDKPEKL atfrd 81 1.00 F 15609658 24, 1, 3 24 tvsls DFKGKNIVLYFYPKDMTPGCTTEACDFR drved 51 1.00 F 15613511 24, 2, 0 64 glntv ILGVSPDPVERH kkfie 75 1.00 F 15613511 25, 1, 2 60 sdyrg DVVILNVWASWCEPCRKEMPALMEL qsdye 84 1.00 F 15614085 26, 1, 2 63 releg KGVFLNFWGTYCPPCEREMPHMEKL ygeyk 87 1.00 F 15614140 27, 1, 2 72 sslrg QPVILHFFATWCPVCQDEMPSLVKL dkeyr 96 1.00 F 15615431 28, 1, 3 20 tfthv DLYGKYTILFFFPKAGTSGCTREAVEFS renfe 47 1.00 F 15643152 28, 2, 0 56 fekaq VVGISRDSVEAL krfke 67 1.00 F 15643152 30, 1, 3 61 gltda LADNRAVVLFFYPFDFSPVCATELCAIQ narwf 88 1.00 F 15790738 30, 2, 0 101 tpgla VWGISPDSTYAH eafad 112 1.00 F 15790738 31, 1, 2 2 m TVTLKDFYADWCGPCKTQDPILEEL eadyd 26 1.00 F 15791337 32, 1, 0 80 idntv VLCISADLPFAQ srfcg 91 1.00 F 15801846 33, 1, 2 72 adyrg RPVVLNFWASWCGPCREEAPLFAKL aahpg 96 1.00 F 15805225 34, 1, 2 78 taaqg KPVVINFWASWCVPCRQEAPLFSKL sqeta 102 1.00 F 15805374 35, 1, 3 26 itlss YRGQSHVVLVFYPLDFSPVCSMQLPEYS gsqdd 53 1.00 F 15807234 35, 2, 0 66 eagav VLGINRDSVYAH rawaa 77 1.00 F 15807234 36, 1, 3 28 vnlae LFKGKKGVLFGVPGAFTPGCSKTHLPGF veqae 55 1.00 F 15826629 37, 1, 2 49 fitkn KIVVVDFWAEWCAPCLILAPVIEEL andyp 73 1.00 F 15899007 38, 1, 3 26 vkips DFKGKVVVLAFYPAAFTSVCTKEMCTFR dsmak 53 1.00 F 15899339 38, 2, 0 66 evnav VIGISVDPPFSN kafke 77 1.00 F 15899339 39, 1, 3 30 vttel LFKGKRVVLFAVPGAFTPTCSLNHLPGY lenrd 57 1.00 F 15964668 40, 1, 2 61 easrq QPVLVDFWAPWCGPCKQLTPVIEKV vreaa 85 1.00 F 15966937 41, 1, 2 61 sdfrg KTLLVNLWATWCVPCRKEMPALDEL qgkls 85 1.00 F 15988313 42, 1, 2 60 qdakg KKVLLNFWATWCKPCRQEMPAMEKL qkeya 84 1.00 F 16078864 43, 1, 2 53 llqdd LPMVIDFWAPWCGPCRSFAPIFAET aaera 77 1.00 F 16123427 44, 1, 3 50 fnlak ALKKGPVVLYFFPAAYTAGCTAEAREFA eatpe 77 1.00 F 16125919 46, 1, 2 21 vlkad GAILVDFWAEWCGPCKMIAPILDEI adeyq 45 1.00 F 1633495 47, 1, 3 31 fnfkq HTNGKTTVLFFWPMDFTFVCPSELIAFD kryee 58 1.00 F 16501671 47, 2, 0 71 krgve VVGVSFDSEFVH nawrn 82 1.00 F 16501671 47, 3, 1 160 lrmvd ALQFHEEHGDVCPAQWEKG kegmn 178 1.00 F 16501671 48, 1, 2 34 vlqcp KPILVYFGAPWCGLCHFVKPLLNHL hgewq 58 1.00 F 1651717 49, 1, 2 60 tlsee RPVLLYFWASWCGVCRFTTPAVAHL aaege 84 1.00 F 16759994 50, 1, 2 53 llkdd LPVVIDFWAPWCGPCRNFAPIFEDV aeers 77 1.00 F 16761507 51, 1, 3 33 slekn IEDDKWTILFFYPMDFTFVCPTEIVAIS arsde 60 1.00 F 16803644 52, 1, 2 19 iissh PKILLNFWAEWCAPCRCFWPTLEQF aemee 43 1.00 F 16804867 53, 1, 3 31 vttdd LFAGKTVAVFSLPGAFTPTCSSTHLPGY nelak 58 1.00 F 17229033 53, 2, 0 73 ngvde IVCISVNDAFVM newak 84 1.00 F 17229033 54, 1, 2 22 vlsed KVVVVDFTATWCGPCRLVSPLMDQL adeyk 46 1.00 F 17229859 55, 1, 2 18 vlegt GYVLVDYFSDGCVPCKALMPAVEEL skkye 42 1.00 F 1729944 56, 1, 2 28 rqhpe KIIILDFYATWCGPCKAIAPLYKEL atthk 52 1.00 F 17531233 57, 1, 2 27 ehlkg KIIGLYFSASWCPPCRAFTPKLKEF feeik 51 1.00 F 17537401 58, 1, 2 63 safrg QPVVINFWAPWCGPCVEEMPELSAL aqeqk 87 1.00 F 17547503 59, 1, 2 286 seykg KTIFLNFWATWCPPCRGEMPYIDEL ykeyn 310 1.00 F 18309723 60, 1, 3 28 rlsev LKRGRPVVLLFFPGAFTSVCTKELCTFR dkmal 55 1.00 F 18313548 60, 2, 0 68 kanae VLAISVDSPFAL kafkd 79 1.00 F 18313548 61, 1, 2 44 dsllg KKIGLYFSAAWCGPCQRFTPQLVEV ynels 68 1.00 F 18406743 61, 2, 2 364 sdlvg KTILMYFSAHWCPPCRAFTPKLVEV ykqik 388 1.00 F 18406743 62, 1, 3 26 eislq DYIGKYVVLAFYPLDFTFVCPTEINRFS dlkga 53 1.00 F 19173077 62, 2, 0 66 rrnav VLLISCDSVYTH kawas 77 1.00 F 19173077 63, 1, 2 15 sdfeg EVVVLNAWGQWCAPCRAEVDDLQLV qetld 39 1.00 F 19554157 64, 1, 2 39 eeykg KVVVINFWATWCGYCVEEMPGFEKV ykefg 63 1.00 F 19705357 66, 1, 2 7 agdfm KPMLLDFSATWCGPCRMQKPILEEL ekkyg 31 1.00 F 20092028 67, 1, 3 27 evtek DTEGRWSVFFFYPADFTFVCPTELGDVA dhyee 54 1.00 F 20151112 67, 2, 0 67 klgvd VYSVSTDTHFTH kawhs 78 1.00 F 20151112 67, 3, 1 154 rkika AQYVAAHPGEVCPAKWKEG eatla 172 1.00 F 20151112 68, 1, 3 29 vdtht LFTGRKVVLFAVPGAFTPTCSAKHLPGY veqfe 56 1.00 F 21112072 69, 1, 2 103 adykg KVVVLNVWGSWCPPCRAEAKNFEKV yqdvk 127 1.00 F 21222859 70, 1, 3 32 qinhk TYEGQWKVVFAWPKDFTFVCPTEIAAFG klnde 59 1.00 F 21223405 70, 2, 0 72 drdaq ILGFSGDSEFVH hawrk 83 1.00 F 21223405 71, 1, 3 28 eihly DLKGKKVLLSFHPLAWTQVCAQQMKSLE enyel 55 1.00 F 21227878 72, 1, 0 78 keegi VLTISADLPFAQ krwca 89 1.00 F 21283385 73, 1, 3 25 mvsls EFKGRKVLLIFYPGDDTPVCTAQLCDYR nnvaa 52 1.00 F 21674812 73, 2, 0 65 srgit VIGISGDSPESH kqfae 76 1.00 F 21674812 74, 1, 2 53 sdfkg ERVLINFWTTWCPPCRQEMPDMQRF yqdlq 77 1.00 F 23098307 76, 1, 2 20 kylqh QRVVVDFSAEWCGPCRAIAPVFDKL sneft 44 1.00 F 267116 77, 1, 2 81 aafkg KVSLVNVWASWCVPCHDEAPLLTEL gkdkr 105 1.00 F 27375582 78, 1, 2 34 vtsdn DVVLADFYADWCGPCQMLEPVVETL aeqtd 58 1.00 F 2822332 79, 1, 2 77 sdlkg KKVILNFWATWCGPCQQEMPDMEAF ykehk 101 1.00 F 30021713 80, 1, 2 19 tisan SNVLVYFWAPLCAPCDLFTPTYEAS srkhf 43 1.00 F 3261501 81, 1, 3 28 irfhd FLGDSWGILFSHPRDFTPVCTTELGRAA klape 55 1.00 F 3318841 81, 2, 0 68 krnvk LIALSIDSVEDH lawsk 79 1.00 F 3318841 81, 3, 1 166 lrvvi SLQLTAEKRVATPVDWKDG dsvmv 184 1.00 F 3318841 82, 1, 2 19 tietn PLVIVDFWAPWCGSCKMLGPVLEEV esevg 43 1.00 F 3323237 83, 1, 2 17 ektah QAVVVNVGASWCPDCRKIEPIMENL aktyk 41 1.00 F 4155972 84, 1, 2 79 vvnse TPVVVDFHAQWCGPCKILGPRLEKM vakqh 103 1.00 F 4200327 85, 1, 3 10 eidin EYKGKYVVLLFYPLDWTFVCPTEMIGYS evagq 37 1.00 F 4433065 85, 2, 0 50 eince VIGVSVDSVYCH qawce 61 1.00 F 4433065 86, 1, 3 32 vsvhs IAAGKKVILFGVPGAFTPTCSMSHVPGF igkae 59 1.00 F 4704732 86, 2, 0 74 kgide IICFSVNDPFVM kawgk 85 1.00 F 4704732 87, 1, 3 28 fdfyk YVGDNWAILFSHPHDFTPVCTTELAEFG kmhee 55 1.00 F 4996210 87, 2, 0 68 klnck LIGFSCNSKESH dqwie 79 1.00 F 4996210 87, 3, 1 163 lrvlk SLQLTNTHPVATPVNWKEG dkcci 181 1.00 F 4996210 88, 1, 3 41 ynask EFANKKVVLFALPGAFTPVCSANHVPEY iqklp 68 1.00 F 5326864 89, 1, 3 88 slkki TENNRVVVFFVYPRASTPGCTRQACGFR dnyqe 115 1.00 F 6322180 90, 1, 3 43 ewskl ISENKKVIITGAPAAFSPTCTVSHIPGY inyld 70 1.00 F 6323138 91, 1, 2 20 nenkg RLIVVDFFAQWCGPCRNIAPKVEAL akeip 44 1.00 F 6687568 92, 1, 0 68 klgve VLSVSVDSVFVH kmwnd 79 1.00 F 6850955 93, 1, 2 18 llttn KKVVVDFYANWCGPCKILGPIFEEV aqdkk 42 1.00 F 7109697 94, 1, 2 21 ilaed KLVVIDFYADWCGPCKIIAPKLDEL aqqys 45 1.00 F 7290567 95, 1, 3 31 evkls DYKGKYVVLFFYPLDFTFVCPTEIIAFS nraed 58 1.00 F 9955016 95, 2, 0 71 klgce VLGVSVDSQFTH lawin 82 1.00 F 9955016 95, 3, 1 160 lrlvq AFQYTDEHGEVCPAGWKPG sdtik 178 1.00 F 9955016 96, 1, 2 49 adlqg KVTLINFWFPSCPGCVSEMPKIIKT andyk 73 1.00 F 15677788 124 motifs Column 1 : Sequence Number, Site Number Column 2 : Motif type Column 3 : Left End Location Column 4 : Motif Element Column 5 : Right End Location Column 6 : Probability of Element Column 7 : Forward Motif (F) or Reverse Complement (R) Column 8 : Sequence Description from Fast A input ------------------------------------------------------------------------- MOTIF a Motif model (residue frequency x 100) ____________________________________________ Pos. # a v c d e f g h i w k l m n y p q r s t Info _____________________________________________________________________________________________ 1 | . 68 . . . . . . 20 . . 10 . . . . . . . . 2.4 2 | . 17 . . . . . . 34 3 . 34 . . 6 . . . . 3 1.7 3 | 13 6 10 . . . 51 . . . . 3 . . . . . . 10 3 1.9 4 | . 31 . . . 10 . . 48 . . 10 . . . . . . . . 2.1 5 | . . . . . . . . . . . . . 3 . . . . 96 . 3.8 7 | . . . 86 . . . . . . . . . 13 . . . . . . 3.2 8 | . . . 10 . . . . . . 3 10 . . . 6 3 . 58 6 2.0 9 | 3 34 . . 6 . . 6 . . 3 . . . . 37 3 . . 3 1.8 10 | . . . . 24 58 . . . . . . . . 17 . . . . . 2.9 12 | . . . . . . . 55 . . . 13 6 6 . . 17 . . . 3.4 nonsite 8 8 . 6 7 4 7 1 6 . 7 9 2 4 2 4 3 4 5 5 site 1 15 1 9 3 6 5 6 10 . . 8 . 2 2 4 2 . 16 1 Motif probability model ____________________________________________ Pos. # a v c d e f g h i w k l m n y p q r s t ____________________________________________ 1 | 0.001 0.679 0.000 0.001 0.001 0.001 0.001 0.000 0.204 0.000 0.001 0.103 0.000 0.001 0.000 0.001 0.001 0.001 0.001 0.001 2 | 0.001 0.171 0.000 0.001 0.001 0.001 0.001 0.000 0.340 0.034 0.001 0.341 0.000 0.001 0.068 0.001 0.001 0.001 0.001 0.035 3 | 0.137 0.069 0.102 0.001 0.001 0.001 0.510 0.000 0.001 0.000 0.001 0.035 0.000 0.001 0.000 0.001 0.001 0.001 0.103 0.035 4 | 0.001 0.306 0.000 0.001 0.001 0.103 0.001 0.000 0.476 0.000 0.001 0.103 0.000 0.001 0.000 0.001 0.001 0.001 0.001 0.001 5 | 0.001 0.001 0.000 0.001 0.001 0.001 0.001 0.000 0.001 0.000 0.001 0.002 0.000 0.035 0.000 0.001 0.001 0.001 0.950 0.001 7 | 0.001 0.001 0.000 0.849 0.001 0.001 0.001 0.000 0.001 0.000 0.001 0.002 0.000 0.136 0.000 0.001 0.001 0.001 0.001 0.001 8 | 0.001 0.001 0.000 0.103 0.001 0.001 0.001 0.000 0.001 0.000 0.035 0.103 0.000 0.001 0.000 0.069 0.034 0.001 0.577 0.069 9 | 0.035 0.340 0.000 0.001 0.069 0.001 0.001 0.068 0.001 0.000 0.035 0.002 0.000 0.001 0.000 0.374 0.034 0.001 0.001 0.035 10 | 0.001 0.001 0.000 0.001 0.238 0.577 0.001 0.000 0.001 0.000 0.001 0.002 0.000 0.001 0.170 0.001 0.001 0.001 0.001 0.001 12 | 0.001 0.001 0.000 0.001 0.001 0.001 0.001 0.543 0.001 0.000 0.001 0.137 0.068 0.068 0.000 0.001 0.170 0.001 0.001 0.001 Background probability model 0.089 0.079 0.008 0.067 0.076 0.044 0.071 0.013 0.061 0.009 0.076 0.094 0.023 0.043 0.027 0.045 0.034 0.044 0.052 0.052 10 columns Num Motifs: 29 1, 1 79 agvda VIVLSANDPFVQ safgk 90 1.00 F 1091044 2, 1 72 klstq ILAISVDSPFSH lqyll 83 1.00 F 11467494 6, 1 66 nlntk IYAISNDSHFVQ knwie 77 1.00 F 13186328 8, 1 68 kknte VISVSEDTVYVH kawvq 79 1.00 F 13541053 9, 1 66 kfkak VIGISVDSPFSL aefak 77 1.00 F 13541117 13, 1 65 eldce LVGLSVDQVFSH ikwie 76 1.00 F 14286173 15, 1 65 klgav VIGVSTDSVEKN rkfae 76 1.00 F 14600438 21, 1 80 megvd VTVVSMDLPFAQ krfce 91 1.00 F 15605963 23, 1 70 tagln VVGISPDKPEKL atfrd 81 1.00 F 15609658 24, 1 64 glntv ILGVSPDPVERH kkfie 75 1.00 F 15613511 28, 1 56 fekaq VVGISRDSVEAL krfke 67 1.00 F 15643152 30, 1 101 tpgla VWGISPDSTYAH eafad 112 1.00 F 15790738 32, 1 80 idntv VLCISADLPFAQ srfcg 91 1.00 F 15801846 35, 1 66 eagav VLGINRDSVYAH rawaa 77 1.00 F 15807234 38, 1 66 evnav VIGISVDPPFSN kafke 77 1.00 F 15899339 47, 1 71 krgve VVGVSFDSEFVH nawrn 82 1.00 F 16501671 53, 1 73 ngvde IVCISVNDAFVM newak 84 1.00 F 17229033 60, 1 68 kanae VLAISVDSPFAL kafkd 79 1.00 F 18313548 62, 1 66 rrnav VLLISCDSVYTH kawas 77 1.00 F 19173077 67, 1 67 klgvd VYSVSTDTHFTH kawhs 78 1.00 F 20151112 70, 1 72 drdaq ILGFSGDSEFVH hawrk 83 1.00 F 21223405 72, 1 78 keegi VLTISADLPFAQ krwca 89 1.00 F 21283385 73, 1 65 srgit VIGISGDSPESH kqfae 76 1.00 F 21674812 81, 1 68 krnvk LIALSIDSVEDH lawsk 79 1.00 F 3318841 85, 1 50 eince VIGVSVDSVYCH qawce 61 1.00 F 4433065 86, 1 74 kgide IICFSVNDPFVM kawgk 85 1.00 F 4704732 87, 1 68 klnck LIGFSCNSKESH dqwie 79 1.00 F 4996210 92, 1 68 klgve VLSVSVDSVFVH kmwnd 79 1.00 F 6850955 95, 1 71 klgce VLGVSVDSQFTH lawin 82 1.00 F 9955016 ***** **** * Column 1 : Sequence Number, Site Number Column 2 : Left End Location Column 4 : Motif Element Column 5 : Right End Location Column 6 : Probability of Element Column 7 : Forward Motif (F) or Reverse Complement (R) Column 8 : Sequence Description from Fast A input Log Motif portion of MAP for motif a = -469.15170 Log Fragmentation portion of MAP for motif a = -3.80666 ============================================================= ====== ELEMENTS OCCURRING GREATER THAN 50% OF THE TIME ===== ====== Motif a ===== ============================================================= Listing of those elements occurring greater than 50% of the time in near optimal sampling using 500 iterations Motif model (residue frequency x 100) ____________________________________________ Pos. # a v c d e f g h i w k l m n y p q r s t Info _____________________________________________________________________________________________ 1 | . 74 . . . . . . 14 . . 11 . . . . . . . . 2.5 2 | . 14 . . . 3 . . 29 3 . 37 . . 7 . . . . 3 1.6 3 | 14 3 3 . . . 59 . . . . 3 . . . . . . 11 3 1.9 4 | . 33 . . . 7 . . 48 . . 11 . . . . . . . . 2.1 5 | . . . . . . . . . . . . . 3 . . . . 96 . 3.8 7 | . . . 96 . . . . . . . . . 3 . . . . . . 3.5 8 | . . . . . . . . . . 3 11 . . . 7 3 . 66 7 2.4 9 | . 40 . . 7 . . 7 . . 3 . . . . 33 3 . . 3 1.9 10 | . . . . 25 51 . . . . . . . . 18 . . . . 3 2.7 12 | . . . . . . . 59 . . . 14 . 7 . . 18 . . . 3.6 nonsite 8 8 . 6 7 4 7 1 6 . 7 9 2 4 2 4 3 4 5 5 site 1 16 . 9 3 6 5 6 9 . . 8 . 1 2 4 2 . 17 2 Motif probability model ____________________________________________ Pos. # a v c d e f g h i w k l m n y p q r s t ____________________________________________ 1 | 0.002 0.729 0.000 0.001 0.001 0.001 0.001 0.000 0.147 0.000 0.001 0.111 0.000 0.001 0.000 0.001 0.001 0.001 0.001 0.001 2 | 0.002 0.147 0.000 0.001 0.001 0.037 0.001 0.000 0.292 0.037 0.001 0.365 0.000 0.001 0.073 0.001 0.001 0.001 0.001 0.037 3 | 0.147 0.038 0.037 0.001 0.001 0.001 0.583 0.000 0.001 0.000 0.001 0.038 0.000 0.001 0.000 0.001 0.001 0.001 0.110 0.037 4 | 0.002 0.329 0.000 0.001 0.001 0.074 0.001 0.000 0.474 0.000 0.001 0.111 0.000 0.001 0.000 0.001 0.001 0.001 0.001 0.001 5 | 0.002 0.001 0.000 0.001 0.001 0.001 0.001 0.000 0.001 0.000 0.001 0.002 0.000 0.037 0.000 0.001 0.001 0.001 0.946 0.001 7 | 0.002 0.001 0.000 0.947 0.001 0.001 0.001 0.000 0.001 0.000 0.001 0.002 0.000 0.037 0.000 0.001 0.001 0.001 0.001 0.001 8 | 0.002 0.001 0.000 0.001 0.001 0.001 0.001 0.000 0.001 0.000 0.038 0.111 0.000 0.001 0.000 0.074 0.037 0.001 0.655 0.074 9 | 0.002 0.401 0.000 0.001 0.074 0.001 0.001 0.073 0.001 0.000 0.038 0.002 0.000 0.001 0.000 0.328 0.037 0.001 0.001 0.037 10 | 0.002 0.001 0.000 0.001 0.256 0.510 0.001 0.000 0.001 0.000 0.001 0.002 0.000 0.001 0.182 0.001 0.001 0.001 0.001 0.037 12 | 0.002 0.001 0.000 0.001 0.001 0.001 0.001 0.582 0.001 0.000 0.001 0.147 0.000 0.073 0.000 0.001 0.182 0.001 0.001 0.001 Background probability model 0.089 0.079 0.008 0.067 0.076 0.044 0.071 0.013 0.061 0.009 0.076 0.094 0.023 0.043 0.027 0.045 0.034 0.044 0.052 0.052 10 columns Num Motifs: 27 2, 1 72 klstq ILAISVDSPFSH lqyll 83 1.00 F 11467494 6, 1 66 nlntk IYAISNDSHFVQ knwie 77 1.00 F 13186328 8, 1 68 kknte VISVSEDTVYVH kawvq 79 1.00 F 13541053 9, 1 66 kfkak VIGISVDSPFSL aefak 77 1.00 F 13541117 13, 1 65 eldce LVGLSVDQVFSH ikwie 76 0.98 F 14286173 15, 1 65 klgav VIGVSTDSVEKN rkfae 76 1.00 F 14600438 21, 1 80 megvd VTVVSMDLPFAQ krfce 91 0.65 F 15605963 23, 1 70 tagln VVGISPDKPEKL atfrd 81 0.99 F 15609658 24, 1 64 glntv ILGVSPDPVERH kkfie 75 1.00 F 15613511 28, 1 56 fekaq VVGISRDSVEAL krfke 67 1.00 F 15643152 30, 1 101 tpgla VWGISPDSTYAH eafad 112 0.98 F 15790738 32, 1 80 idntv VLCISADLPFAQ srfcg 91 0.99 F 15801846 35, 1 66 eagav VLGINRDSVYAH rawaa 77 1.00 F 15807234 38, 1 66 evnav VIGISVDPPFSN kafke 77 1.00 F 15899339 47, 1 71 krgve VVGVSFDSEFVH nawrn 82 1.00 F 16501671 60, 1 68 kanae VLAISVDSPFAL kafkd 79 1.00 F 18313548 62, 1 66 rrnav VLLISCDSVYTH kawas 77 1.00 F 19173077 67, 1 67 klgvd VYSVSTDTHFTH kawhs 78 1.00 F 20151112 70, 1 72 drdaq ILGFSGDSEFVH hawrk 83 1.00 F 21223405 72, 1 78 keegi VLTISADLPFAQ krwca 89 0.99 F 21283385 73, 1 65 srgit VIGISGDSPESH kqfae 76 1.00 F 21674812 81, 1 68 krnvk LIALSIDSVEDH lawsk 79 1.00 F 3318841 85, 1 50 eince VIGVSVDSVYCH qawce 61 1.00 F 4433065 87, 1 68 klnck LIGFSCNSKESH dqwie 79 0.56 F 4996210 89, 1 127 kkyaa VFGLSADSVTSQ kkfqs 138 0.51 F 6322180 92, 1 68 klgve VLSVSVDSVFVH kmwnd 79 1.00 F 6850955 95, 1 71 klgce VLGVSVDSQFTH lawin 82 1.00 F 9955016 ***** **** * ------------------------------------------------------------------------- MOTIF b Motif model (residue frequency x 100) ____________________________________________ Pos. # a v c d e f g h i w k l m n y p q r s t Info _____________________________________________________________________________________________ 1 | 50 . . . . . . . 16 . . . . . . . . . 33 . 1.9 2 | . . . . . 16 . . . . . 50 . . . . 33 . . . 2.1 3 | . . . . . . . . . . . . . . 33 . 66 . . . 3.4 4 | . 33 . . . 16 . . . . . 33 . . 16 . . . . . 1.7 6 | 33 . . 16 33 . . . . . . . . 16 . . . . . . 1.5 8 | . . . . . . . 50 . . 16 . . . . 33 . . . . 3.2 9 | . . . . . . 66 . . . . . . . . 16 . 16 . . 2.3 10 | . 33 . 16 33 . . . . . . . . . 16 . . . . . 1.7 11 | 50 50 . . . . . . . . . . . . . . . . . . 2.1 12 | . . 66 . . . . . . . . . . . . . . . . 33 4.4 13 | . . . . . . . . . . . . . . . 100 . . . . 3.8 14 | 50 50 . . . . . . . . . . . . . . . . . . 2.1 16 | . . . . . . . . . 100 . . . . . . . . . . 5.8 17 | . . . . 16 . . . . . 66 . . 16 . . . . . . 2.1 19 | . . . . . . 100 . . . . . . . . . . . . . 3.2 nonsite 8 7 . 6 7 4 7 1 6 . 7 9 2 4 2 4 3 4 5 5 site 12 11 4 2 5 2 11 3 1 6 5 5 . 2 4 10 6 1 2 2 Motif probability model ____________________________________________ Pos. # a v c d e f g h i w k l m n y p q r s t ____________________________________________ 1 | 0.468 0.006 0.001 0.005 0.005 0.004 0.005 0.001 0.158 0.001 0.006 0.007 0.002 0.003 0.002 0.004 0.002 0.003 0.312 0.004 2 | 0.006 0.006 0.001 0.005 0.005 0.158 0.005 0.001 0.004 0.001 0.006 0.469 0.002 0.003 0.002 0.004 0.310 0.003 0.004 0.004 3 | 0.006 0.006 0.001 0.005 0.005 0.004 0.005 0.001 0.004 0.001 0.006 0.007 0.002 0.003 0.310 0.004 0.618 0.003 0.004 0.004 4 | 0.006 0.314 0.001 0.005 0.005 0.158 0.005 0.001 0.004 0.001 0.006 0.315 0.002 0.003 0.156 0.004 0.002 0.003 0.004 0.004 6 | 0.314 0.006 0.001 0.159 0.313 0.004 0.005 0.001 0.004 0.001 0.006 0.007 0.002 0.157 0.002 0.004 0.002 0.003 0.004 0.004 8 | 0.006 0.006 0.001 0.005 0.005 0.004 0.005 0.463 0.004 0.001 0.159 0.007 0.002 0.003 0.002 0.312 0.002 0.003 0.004 0.004 9 | 0.006 0.006 0.001 0.005 0.005 0.004 0.621 0.001 0.004 0.001 0.006 0.007 0.002 0.003 0.002 0.158 0.002 0.157 0.004 0.004 10 | 0.006 0.314 0.001 0.159 0.313 0.004 0.005 0.001 0.004 0.001 0.006 0.007 0.002 0.003 0.156 0.004 0.002 0.003 0.004 0.004 11 | 0.468 0.468 0.001 0.005 0.005 0.004 0.005 0.001 0.004 0.001 0.006 0.007 0.002 0.003 0.002 0.004 0.002 0.003 0.004 0.004 12 | 0.006 0.006 0.617 0.005 0.005 0.004 0.005 0.001 0.004 0.001 0.006 0.007 0.002 0.003 0.002 0.004 0.002 0.003 0.004 0.312 13 | 0.006 0.006 0.001 0.005 0.005 0.004 0.005 0.001 0.004 0.001 0.006 0.007 0.002 0.003 0.002 0.927 0.002 0.003 0.004 0.004 14 | 0.468 0.468 0.001 0.005 0.005 0.004 0.005 0.001 0.004 0.001 0.006 0.007 0.002 0.003 0.002 0.004 0.002 0.003 0.004 0.004 16 | 0.006 0.006 0.001 0.005 0.005 0.004 0.005 0.001 0.004 0.924 0.006 0.007 0.002 0.003 0.002 0.004 0.002 0.003 0.004 0.004 17 | 0.006 0.006 0.001 0.005 0.159 0.004 0.005 0.001 0.004 0.001 0.621 0.007 0.002 0.157 0.002 0.004 0.002 0.003 0.004 0.004 19 | 0.006 0.006 0.001 0.005 0.005 0.004 0.928 0.001 0.004 0.001 0.006 0.007 0.002 0.003 0.002 0.004 0.002 0.003 0.004 0.004 Background probability model 0.089 0.079 0.008 0.067 0.076 0.044 0.071 0.013 0.061 0.009 0.076 0.094 0.023 0.043 0.027 0.045 0.034 0.044 0.052 0.052 15 columns Num Motifs: 6 2, 1 161 riles IQYVKENPGYACPVNWNFG dqvfy 179 1.00 F 11467494 47, 1 160 lrmvd ALQFHEEHGDVCPAQWEKG kegmn 178 1.00 F 16501671 67, 1 154 rkika AQYVAAHPGEVCPAKWKEG eatla 172 1.00 F 20151112 81, 1 166 lrvvi SLQLTAEKRVATPVDWKDG dsvmv 184 1.00 F 3318841 87, 1 163 lrvlk SLQLTNTHPVATPVNWKEG dkcci 181 1.00 F 4996210 95, 1 160 lrlvq AFQYTDEHGEVCPAGWKPG sdtik 178 1.00 F 9955016 **** * ******* ** * Column 1 : Sequence Number, Site Number Column 2 : Left End Location Column 4 : Motif Element Column 5 : Right End Location Column 6 : Probability of Element Column 7 : Forward Motif (F) or Reverse Complement (R) Column 8 : Sequence Description from Fast A input Log Motif portion of MAP for motif b = -187.76179 Log Fragmentation portion of MAP for motif b = -7.77486 ============================================================= ====== ELEMENTS OCCURRING GREATER THAN 50% OF THE TIME ===== ====== Motif b ===== ============================================================= Listing of those elements occurring greater than 50% of the time in near optimal sampling using 500 iterations Motif model (residue frequency x 100) ____________________________________________ Pos. # a v c d e f g h i w k l m n y p q r s t Info _____________________________________________________________________________________________ 1 | 50 . . . . . . . 16 . . . . . . . . . 33 . 1.9 2 | . . . . . 16 . . . . . 50 . . . . 33 . . . 2.1 3 | . . . . . . . . . . . . . . 33 . 66 . . . 3.4 4 | . 33 . . . 16 . . . . . 33 . . 16 . . . . . 1.7 6 | 33 . . 16 33 . . . . . . . . 16 . . . . . . 1.5 8 | . . . . . . . 50 . . 16 . . . . 33 . . . . 3.2 9 | . . . . . . 66 . . . . . . . . 16 . 16 . . 2.3 10 | . 33 . 16 33 . . . . . . . . . 16 . . . . . 1.7 11 | 50 50 . . . . . . . . . . . . . . . . . . 2.1 12 | . . 66 . . . . . . . . . . . . . . . . 33 4.4 13 | . . . . . . . . . . . . . . . 100 . . . . 3.8 14 | 50 50 . . . . . . . . . . . . . . . . . . 2.1 16 | . . . . . . . . . 100 . . . . . . . . . . 5.8 17 | . . . . 16 . . . . . 66 . . 16 . . . . . . 2.1 19 | . . . . . . 100 . . . . . . . . . . . . . 3.2 nonsite 8 7 . 6 7 4 7 1 6 . 7 9 2 4 2 4 3 4 5 5 site 12 11 4 2 5 2 11 3 1 6 5 5 . 2 4 10 6 1 2 2 Motif probability model ____________________________________________ Pos. # a v c d e f g h i w k l m n y p q r s t ____________________________________________ 1 | 0.468 0.006 0.001 0.005 0.005 0.004 0.005 0.001 0.158 0.001 0.006 0.007 0.002 0.003 0.002 0.004 0.002 0.003 0.312 0.004 2 | 0.006 0.006 0.001 0.005 0.005 0.158 0.005 0.001 0.004 0.001 0.006 0.469 0.002 0.003 0.002 0.004 0.310 0.003 0.004 0.004 3 | 0.006 0.006 0.001 0.005 0.005 0.004 0.005 0.001 0.004 0.001 0.006 0.007 0.002 0.003 0.310 0.004 0.618 0.003 0.004 0.004 4 | 0.006 0.314 0.001 0.005 0.005 0.158 0.005 0.001 0.004 0.001 0.006 0.315 0.002 0.003 0.156 0.004 0.002 0.003 0.004 0.004 6 | 0.314 0.006 0.001 0.159 0.313 0.004 0.005 0.001 0.004 0.001 0.006 0.007 0.002 0.157 0.002 0.004 0.002 0.003 0.004 0.004 8 | 0.006 0.006 0.001 0.005 0.005 0.004 0.005 0.463 0.004 0.001 0.159 0.007 0.002 0.003 0.002 0.312 0.002 0.003 0.004 0.004 9 | 0.006 0.006 0.001 0.005 0.005 0.004 0.621 0.001 0.004 0.001 0.006 0.007 0.002 0.003 0.002 0.158 0.002 0.157 0.004 0.004 10 | 0.006 0.314 0.001 0.159 0.313 0.004 0.005 0.001 0.004 0.001 0.006 0.007 0.002 0.003 0.156 0.004 0.002 0.003 0.004 0.004 11 | 0.468 0.468 0.001 0.005 0.005 0.004 0.005 0.001 0.004 0.001 0.006 0.007 0.002 0.003 0.002 0.004 0.002 0.003 0.004 0.004 12 | 0.006 0.006 0.617 0.005 0.005 0.004 0.005 0.001 0.004 0.001 0.006 0.007 0.002 0.003 0.002 0.004 0.002 0.003 0.004 0.312 13 | 0.006 0.006 0.001 0.005 0.005 0.004 0.005 0.001 0.004 0.001 0.006 0.007 0.002 0.003 0.002 0.927 0.002 0.003 0.004 0.004 14 | 0.468 0.468 0.001 0.005 0.005 0.004 0.005 0.001 0.004 0.001 0.006 0.007 0.002 0.003 0.002 0.004 0.002 0.003 0.004 0.004 16 | 0.006 0.006 0.001 0.005 0.005 0.004 0.005 0.001 0.004 0.924 0.006 0.007 0.002 0.003 0.002 0.004 0.002 0.003 0.004 0.004 17 | 0.006 0.006 0.001 0.005 0.159 0.004 0.005 0.001 0.004 0.001 0.621 0.007 0.002 0.157 0.002 0.004 0.002 0.003 0.004 0.004 19 | 0.006 0.006 0.001 0.005 0.005 0.004 0.928 0.001 0.004 0.001 0.006 0.007 0.002 0.003 0.002 0.004 0.002 0.003 0.004 0.004 Background probability model 0.089 0.079 0.008 0.067 0.076 0.044 0.071 0.013 0.061 0.009 0.076 0.094 0.023 0.043 0.027 0.045 0.034 0.044 0.052 0.052 15 columns Num Motifs: 6 2, 1 161 riles IQYVKENPGYACPVNWNFG dqvfy 179 1.00 F 11467494 47, 1 160 lrmvd ALQFHEEHGDVCPAQWEKG kegmn 178 1.00 F 16501671 67, 1 154 rkika AQYVAAHPGEVCPAKWKEG eatla 172 1.00 F 20151112 81, 1 166 lrvvi SLQLTAEKRVATPVDWKDG dsvmv 184 1.00 F 3318841 87, 1 163 lrvlk SLQLTNTHPVATPVNWKEG dkcci 181 1.00 F 4996210 95, 1 160 lrlvq AFQYTDEHGEVCPAGWKPG sdtik 178 1.00 F 9955016 **** * ******* ** * ------------------------------------------------------------------------- MOTIF c Motif model (residue frequency x 100) ____________________________________________ Pos. # a v c d e f g h i w k l m n y p q r s t Info _____________________________________________________________________________________________ 1 | . . . 5 3 . 5 . . . 53 3 . . . 3 11 7 1 3 1.6 3 | . 61 . . . . . . 22 . . 7 3 . . . . . 1 3 2.1 4 | . 38 . . . 3 3 . 11 . . 40 1 . . . . . . . 1.7 5 | 5 35 . . . . . . 24 . 1 31 1 . . . . . . . 1.7 6 | . . . 48 . . . 1 . . . . . 37 11 . 1 . . . 2.7 7 | 1 7 . . . 85 . . . . . 3 . . 1 . . . . . 3.4 8 | . . . . . 5 3 1 . 55 . . . . 18 . . . 9 5 3.5 9 | 87 . . . . 1 5 . . . . . . . . . . . 3 1 2.8 10 | 3 . . 14 9 . . 1 . . . . . 1 . 16 5 . 20 25 1.5 11 | . . . . . . 1 . . 90 . 1 . . 1 . . . 1 1 5.2 12 | . . 100 . . . . . . . . . . . . . . . . . 6.0 13 | 9 7 . . 1 . 53 . . . 1 . 1 . . 24 . . . . 2.0 14 | . 7 . 1 . . 1 . . . . 1 . . 1 83 . . 1 . 3.2 15 | . . 100 . . . . . . . . . . . . . . . . . 6.0 16 | . 5 . 1 1 . . 3 1 . 27 1 . . . . 9 46 . . 2.1 18 | . 3 . . 37 12 . . 18 . . 16 3 . . . 3 . . 3 1.4 20 | . . . 1 . . . . . . 3 . . . . 94 . . . . 3.9 22 | . 7 . . . 22 . . 9 . . 44 11 . 5 . . . . . 1.8 24 | 7 . . 3 37 . . 3 . . 27 1 . 1 . . 11 1 1 1 1.4 25 | 3 18 . 1 . 9 . . 7 . . 51 1 . . . . . 1 3 1.4 nonsite 8 7 1 6 7 4 6 1 5 1 7 9 2 4 2 4 3 4 4 4 site 5 9 10 3 4 7 3 . 4 7 5 10 1 2 2 11 2 2 2 2 Motif probability model ____________________________________________ Pos. # a v c d e f g h i w k l m n y p q r s t ____________________________________________ 1 | 0.001 0.001 0.000 0.056 0.037 0.000 0.056 0.000 0.001 0.000 0.533 0.038 0.000 0.000 0.000 0.037 0.110 0.074 0.019 0.037 3 | 0.001 0.606 0.000 0.001 0.001 0.000 0.001 0.000 0.221 0.000 0.001 0.074 0.037 0.000 0.000 0.000 0.000 0.000 0.019 0.037 4 | 0.001 0.386 0.000 0.001 0.001 0.037 0.037 0.000 0.111 0.000 0.001 0.405 0.019 0.000 0.000 0.000 0.000 0.000 0.000 0.000 5 | 0.056 0.349 0.000 0.001 0.001 0.000 0.001 0.000 0.239 0.000 0.019 0.313 0.019 0.000 0.000 0.000 0.000 0.000 0.000 0.000 6 | 0.001 0.001 0.000 0.478 0.001 0.000 0.001 0.018 0.001 0.000 0.001 0.001 0.000 0.367 0.110 0.000 0.019 0.000 0.000 0.000 7 | 0.019 0.074 0.000 0.001 0.001 0.845 0.001 0.000 0.001 0.000 0.001 0.038 0.000 0.000 0.019 0.000 0.000 0.000 0.000 0.000 8 | 0.001 0.001 0.000 0.001 0.001 0.056 0.037 0.018 0.001 0.551 0.001 0.001 0.000 0.000 0.184 0.000 0.000 0.000 0.092 0.056 9 | 0.863 0.001 0.000 0.001 0.001 0.019 0.056 0.000 0.001 0.000 0.001 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.037 0.019 10 | 0.037 0.001 0.000 0.147 0.092 0.000 0.001 0.018 0.001 0.000 0.001 0.001 0.000 0.019 0.000 0.166 0.055 0.000 0.202 0.257 11 | 0.001 0.001 0.000 0.001 0.001 0.000 0.019 0.000 0.001 0.899 0.001 0.019 0.000 0.000 0.019 0.000 0.000 0.000 0.019 0.019 12 | 0.001 0.001 0.991 0.001 0.001 0.000 0.001 0.000 0.001 0.000 0.001 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 13 | 0.093 0.074 0.000 0.001 0.019 0.000 0.533 0.000 0.001 0.000 0.019 0.001 0.019 0.000 0.000 0.239 0.000 0.000 0.000 0.000 14 | 0.001 0.074 0.000 0.019 0.001 0.000 0.019 0.000 0.001 0.000 0.001 0.019 0.000 0.000 0.019 0.826 0.000 0.000 0.019 0.000 15 | 0.001 0.001 0.991 0.001 0.001 0.000 0.001 0.000 0.001 0.000 0.001 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 16 | 0.001 0.056 0.000 0.019 0.019 0.000 0.001 0.037 0.019 0.000 0.276 0.019 0.000 0.000 0.000 0.000 0.092 0.459 0.000 0.000 18 | 0.001 0.037 0.000 0.001 0.368 0.129 0.001 0.000 0.184 0.000 0.001 0.166 0.037 0.000 0.000 0.000 0.037 0.000 0.000 0.037 20 | 0.001 0.001 0.000 0.019 0.001 0.000 0.001 0.000 0.001 0.000 0.037 0.001 0.000 0.000 0.000 0.936 0.000 0.000 0.000 0.000 22 | 0.001 0.074 0.000 0.001 0.001 0.221 0.001 0.000 0.092 0.000 0.001 0.441 0.110 0.000 0.055 0.000 0.000 0.000 0.000 0.000 24 | 0.074 0.001 0.000 0.037 0.368 0.000 0.001 0.037 0.001 0.000 0.276 0.019 0.000 0.019 0.000 0.000 0.110 0.019 0.019 0.019 25 | 0.037 0.184 0.000 0.019 0.001 0.092 0.001 0.000 0.074 0.000 0.001 0.515 0.019 0.000 0.000 0.000 0.000 0.000 0.019 0.037 Background probability model 0.089 0.079 0.008 0.067 0.076 0.044 0.071 0.013 0.061 0.009 0.076 0.094 0.023 0.043 0.027 0.045 0.034 0.044 0.052 0.052 20 columns Num Motifs: 54 3, 1 17 viqsd KLVVVDFYADWCMPCRYISPILEKL skeyn 41 1.00 F 11499727 4, 1 22 llntt QYVVADFYADWCGPCKAIAPMYAQF aktfs 46 1.00 F 1174686 5, 1 19 ifsak KNVIVDFWAAWCGPCKLTSPEFQKA adefs 43 1.00 F 12044976 7, 1 21 kenhs KPILIDFYADWCPPCRMLIPVLDSI ekkhg 45 1.00 F 13358154 10, 1 17 aetse GVVLADFWAPWCGPCKMIAPVLEEL dqemg 41 1.00 F 135765 11, 1 29 akesn KLIVIDFTASWCPPCRMIAPIFNDL akkfm 53 1.00 F 1388082 12, 1 44 likqn DKLVIDFYATWCGPCKMMQPHLTKL iqayp 68 1.00 F 140543 14, 1 80 selrg KVVMLQFTASWCGVCRKEMPFIEKD iwlkh 104 1.00 F 14578634 16, 1 23 lqnsd KPVLVDFYATWCGPCQLMVPILNEV setlk 47 1.00 F 15218394 17, 1 157 adfrg RPLVINLWASWCPPCRREMPVLQQA qaenp 181 1.00 F 15597673 18, 1 26 ensfh KPVLVDFWADWCAPCKALMPLLAQI aesyq 50 1.00 F 15599256 19, 1 67 negkg KTILLNFWSETCGVCIAELKTFEQL lqsyp 91 1.00 F 15602312 20, 1 61 eefkg KVLLINFWATWCPPCKEEIPMFKEI yekyr 85 1.00 F 15605725 25, 1 60 sdyrg DVVILNVWASWCEPCRKEMPALMEL qsdye 84 1.00 F 15614085 26, 1 63 releg KGVFLNFWGTYCPPCEREMPHMEKL ygeyk 87 1.00 F 15614140 27, 1 72 sslrg QPVILHFFATWCPVCQDEMPSLVKL dkeyr 96 1.00 F 15615431 31, 1 2 m TVTLKDFYADWCGPCKTQDPILEEL eadyd 26 1.00 F 15791337 33, 1 72 adyrg RPVVLNFWASWCGPCREEAPLFAKL aahpg 96 1.00 F 15805225 34, 1 78 taaqg KPVVINFWASWCVPCRQEAPLFSKL sqeta 102 1.00 F 15805374 37, 1 49 fitkn KIVVVDFWAEWCAPCLILAPVIEEL andyp 73 1.00 F 15899007 40, 1 61 easrq QPVLVDFWAPWCGPCKQLTPVIEKV vreaa 85 1.00 F 15966937 41, 1 61 sdfrg KTLLVNLWATWCVPCRKEMPALDEL qgkls 85 1.00 F 15988313 42, 1 60 qdakg KKVLLNFWATWCKPCRQEMPAMEKL qkeya 84 1.00 F 16078864 43, 1 53 llqdd LPMVIDFWAPWCGPCRSFAPIFAET aaera 77 1.00 F 16123427 46, 1 21 vlkad GAILVDFWAEWCGPCKMIAPILDEI adeyq 45 1.00 F 1633495 48, 1 34 vlqcp KPILVYFGAPWCGLCHFVKPLLNHL hgewq 58 1.00 F 1651717 49, 1 60 tlsee RPVLLYFWASWCGVCRFTTPAVAHL aaege 84 1.00 F 16759994 50, 1 53 llkdd LPVVIDFWAPWCGPCRNFAPIFEDV aeers 77 1.00 F 16761507 52, 1 19 iissh PKILLNFWAEWCAPCRCFWPTLEQF aemee 43 1.00 F 16804867 54, 1 22 vlsed KVVVVDFTATWCGPCRLVSPLMDQL adeyk 46 1.00 F 17229859 55, 1 18 vlegt GYVLVDYFSDGCVPCKALMPAVEEL skkye 42 1.00 F 1729944 56, 1 28 rqhpe KIIILDFYATWCGPCKAIAPLYKEL atthk 52 1.00 F 17531233 57, 1 27 ehlkg KIIGLYFSASWCPPCRAFTPKLKEF feeik 51 1.00 F 17537401 58, 1 63 safrg QPVVINFWAPWCGPCVEEMPELSAL aqeqk 87 1.00 F 17547503 59, 1 286 seykg KTIFLNFWATWCPPCRGEMPYIDEL ykeyn 310 1.00 F 18309723 61, 1 44 dsllg KKIGLYFSAAWCGPCQRFTPQLVEV ynels 68 1.00 F 18406743 61, 2 364 sdlvg KTILMYFSAHWCPPCRAFTPKLVEV ykqik 388 1.00 F 18406743 63, 1 15 sdfeg EVVVLNAWGQWCAPCRAEVDDLQLV qetld 39 1.00 F 19554157 64, 1 39 eeykg KVVVINFWATWCGYCVEEMPGFEKV ykefg 63 1.00 F 19705357 66, 1 7 agdfm KPMLLDFSATWCGPCRMQKPILEEL ekkyg 31 1.00 F 20092028 69, 1 103 adykg KVVVLNVWGSWCPPCRAEAKNFEKV yqdvk 127 1.00 F 21222859 74, 1 53 sdfkg ERVLINFWTTWCPPCRQEMPDMQRF yqdlq 77 1.00 F 23098307 76, 1 20 kylqh QRVVVDFSAEWCGPCRAIAPVFDKL sneft 44 1.00 F 267116 77, 1 81 aafkg KVSLVNVWASWCVPCHDEAPLLTEL gkdkr 105 1.00 F 27375582 78, 1 34 vtsdn DVVLADFYADWCGPCQMLEPVVETL aeqtd 58 1.00 F 2822332 79, 1 77 sdlkg KKVILNFWATWCGPCQQEMPDMEAF ykehk 101 1.00 F 30021713 80, 1 19 tisan SNVLVYFWAPLCAPCDLFTPTYEAS srkhf 43 1.00 F 3261501 82, 1 19 tietn PLVIVDFWAPWCGSCKMLGPVLEEV esevg 43 1.00 F 3323237 83, 1 17 ektah QAVVVNVGASWCPDCRKIEPIMENL aktyk 41 1.00 F 4155972 84, 1 79 vvnse TPVVVDFHAQWCGPCKILGPRLEKM vakqh 103 1.00 F 4200327 91, 1 20 nenkg RLIVVDFFAQWCGPCRNIAPKVEAL akeip 44 1.00 F 6687568 93, 1 18 llttn KKVVVDFYANWCGPCKILGPIFEEV aqdkk 42 1.00 F 7109697 94, 1 21 ilaed KLVVIDFYADWCGPCKIIAPKLDEL aqqys 45 1.00 F 7290567 96, 1 49 adlqg KVTLINFWFPSCPGCVSEMPKIIKT andyk 73 1.00 F 15677788 * ************** * * * ** Column 1 : Sequence Number, Site Number Column 2 : Left End Location Column 4 : Motif Element Column 5 : Right End Location Column 6 : Probability of Element Column 7 : Forward Motif (F) or Reverse Complement (R) Column 8 : Sequence Description from Fast A input Log Motif portion of MAP for motif c = -1607.59351 Log Fragmentation portion of MAP for motif c = -10.42374 ============================================================= ====== ELEMENTS OCCURRING GREATER THAN 50% OF THE TIME ===== ====== Motif c ===== ============================================================= Listing of those elements occurring greater than 50% of the time in near optimal sampling using 500 iterations Motif model (residue frequency x 100) ____________________________________________ Pos. # a v c d e f g h i w k l m n y p q r s t Info _____________________________________________________________________________________________ 1 | . . . 5 3 . 5 . . . 53 3 . . . 3 11 7 1 3 1.6 3 | . 61 . . . . . . 22 . . 7 3 . . . . . 1 3 2.1 4 | . 38 . . . 3 3 . 11 . . 40 1 . . . . . . . 1.7 5 | 5 35 . . . . . . 24 . 1 31 1 . . . . . . . 1.7 6 | . . . 48 . . . 1 . . . . . 37 11 . 1 . . . 2.7 7 | 1 7 . . . 85 . . . . . 3 . . 1 . . . . . 3.4 8 | . . . . . 5 3 1 . 55 . . . . 18 . . . 9 5 3.5 9 | 87 . . . . 1 5 . . . . . . . . . . . 3 1 2.8 10 | 3 . . 14 9 . . 1 . . . . . 1 . 16 5 . 20 25 1.5 11 | . . . . . . 1 . . 90 . 1 . . 1 . . . 1 1 5.2 12 | . . 100 . . . . . . . . . . . . . . . . . 6.0 13 | 9 7 . . 1 . 53 . . . 1 . 1 . . 24 . . . . 2.0 14 | . 7 . 1 . . 1 . . . . 1 . . 1 83 . . 1 . 3.2 15 | . . 100 . . . . . . . . . . . . . . . . . 6.0 16 | . 5 . 1 1 . . 3 1 . 27 1 . . . . 9 46 . . 2.1 18 | . 3 . . 37 12 . . 18 . . 16 3 . . . 3 . . 3 1.4 20 | . . . 1 . . . . . . 3 . . . . 94 . . . . 3.9 22 | . 7 . . . 22 . . 9 . . 44 11 . 5 . . . . . 1.8 24 | 7 . . 3 37 . . 3 . . 27 1 . 1 . . 11 1 1 1 1.4 25 | 3 18 . 1 . 9 . . 7 . . 51 1 . . . . . 1 3 1.4 nonsite 8 7 1 6 7 4 6 1 5 1 7 9 2 4 2 4 3 4 4 4 site 5 9 10 3 4 7 3 . 4 7 5 10 1 2 2 11 2 2 2 2 Motif probability model ____________________________________________ Pos. # a v c d e f g h i w k l m n y p q r s t ____________________________________________ 1 | 0.001 0.001 0.000 0.056 0.037 0.000 0.056 0.000 0.001 0.000 0.533 0.038 0.000 0.000 0.000 0.037 0.110 0.074 0.019 0.037 3 | 0.001 0.606 0.000 0.001 0.001 0.000 0.001 0.000 0.221 0.000 0.001 0.074 0.037 0.000 0.000 0.000 0.000 0.000 0.019 0.037 4 | 0.001 0.386 0.000 0.001 0.001 0.037 0.037 0.000 0.111 0.000 0.001 0.405 0.019 0.000 0.000 0.000 0.000 0.000 0.000 0.000 5 | 0.056 0.349 0.000 0.001 0.001 0.000 0.001 0.000 0.239 0.000 0.019 0.313 0.019 0.000 0.000 0.000 0.000 0.000 0.000 0.000 6 | 0.001 0.001 0.000 0.478 0.001 0.000 0.001 0.018 0.001 0.000 0.001 0.001 0.000 0.367 0.110 0.000 0.019 0.000 0.000 0.000 7 | 0.019 0.074 0.000 0.001 0.001 0.845 0.001 0.000 0.001 0.000 0.001 0.038 0.000 0.000 0.019 0.000 0.000 0.000 0.000 0.000 8 | 0.001 0.001 0.000 0.001 0.001 0.056 0.037 0.018 0.001 0.551 0.001 0.001 0.000 0.000 0.184 0.000 0.000 0.000 0.092 0.056 9 | 0.863 0.001 0.000 0.001 0.001 0.019 0.056 0.000 0.001 0.000 0.001 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.037 0.019 10 | 0.037 0.001 0.000 0.147 0.092 0.000 0.001 0.018 0.001 0.000 0.001 0.001 0.000 0.019 0.000 0.166 0.055 0.000 0.202 0.257 11 | 0.001 0.001 0.000 0.001 0.001 0.000 0.019 0.000 0.001 0.899 0.001 0.019 0.000 0.000 0.019 0.000 0.000 0.000 0.019 0.019 12 | 0.001 0.001 0.991 0.001 0.001 0.000 0.001 0.000 0.001 0.000 0.001 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 13 | 0.093 0.074 0.000 0.001 0.019 0.000 0.533 0.000 0.001 0.000 0.019 0.001 0.019 0.000 0.000 0.239 0.000 0.000 0.000 0.000 14 | 0.001 0.074 0.000 0.019 0.001 0.000 0.019 0.000 0.001 0.000 0.001 0.019 0.000 0.000 0.019 0.826 0.000 0.000 0.019 0.000 15 | 0.001 0.001 0.991 0.001 0.001 0.000 0.001 0.000 0.001 0.000 0.001 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 16 | 0.001 0.056 0.000 0.019 0.019 0.000 0.001 0.037 0.019 0.000 0.276 0.019 0.000 0.000 0.000 0.000 0.092 0.459 0.000 0.000 18 | 0.001 0.037 0.000 0.001 0.368 0.129 0.001 0.000 0.184 0.000 0.001 0.166 0.037 0.000 0.000 0.000 0.037 0.000 0.000 0.037 20 | 0.001 0.001 0.000 0.019 0.001 0.000 0.001 0.000 0.001 0.000 0.037 0.001 0.000 0.000 0.000 0.936 0.000 0.000 0.000 0.000 22 | 0.001 0.074 0.000 0.001 0.001 0.221 0.001 0.000 0.092 0.000 0.001 0.441 0.110 0.000 0.055 0.000 0.000 0.000 0.000 0.000 24 | 0.074 0.001 0.000 0.037 0.368 0.000 0.001 0.037 0.001 0.000 0.276 0.019 0.000 0.019 0.000 0.000 0.110 0.019 0.019 0.019 25 | 0.037 0.184 0.000 0.019 0.001 0.092 0.001 0.000 0.074 0.000 0.001 0.515 0.019 0.000 0.000 0.000 0.000 0.000 0.019 0.037 Background probability model 0.089 0.079 0.008 0.067 0.076 0.044 0.071 0.013 0.061 0.009 0.076 0.094 0.023 0.043 0.027 0.045 0.034 0.044 0.052 0.052 20 columns Num Motifs: 54 3, 1 17 viqsd KLVVVDFYADWCMPCRYISPILEKL skeyn 41 1.00 F 11499727 4, 1 22 llntt QYVVADFYADWCGPCKAIAPMYAQF aktfs 46 1.00 F 1174686 5, 1 19 ifsak KNVIVDFWAAWCGPCKLTSPEFQKA adefs 43 1.00 F 12044976 7, 1 21 kenhs KPILIDFYADWCPPCRMLIPVLDSI ekkhg 45 1.00 F 13358154 10, 1 17 aetse GVVLADFWAPWCGPCKMIAPVLEEL dqemg 41 1.00 F 135765 11, 1 29 akesn KLIVIDFTASWCPPCRMIAPIFNDL akkfm 53 1.00 F 1388082 12, 1 44 likqn DKLVIDFYATWCGPCKMMQPHLTKL iqayp 68 1.00 F 140543 14, 1 80 selrg KVVMLQFTASWCGVCRKEMPFIEKD iwlkh 104 1.00 F 14578634 16, 1 23 lqnsd KPVLVDFYATWCGPCQLMVPILNEV setlk 47 1.00 F 15218394 17, 1 157 adfrg RPLVINLWASWCPPCRREMPVLQQA qaenp 181 1.00 F 15597673 18, 1 26 ensfh KPVLVDFWADWCAPCKALMPLLAQI aesyq 50 1.00 F 15599256 19, 1 67 negkg KTILLNFWSETCGVCIAELKTFEQL lqsyp 91 1.00 F 15602312 20, 1 61 eefkg KVLLINFWATWCPPCKEEIPMFKEI yekyr 85 1.00 F 15605725 25, 1 60 sdyrg DVVILNVWASWCEPCRKEMPALMEL qsdye 84 1.00 F 15614085 26, 1 63 releg KGVFLNFWGTYCPPCEREMPHMEKL ygeyk 87 1.00 F 15614140 27, 1 72 sslrg QPVILHFFATWCPVCQDEMPSLVKL dkeyr 96 1.00 F 15615431 31, 1 2 m TVTLKDFYADWCGPCKTQDPILEEL eadyd 26 1.00 F 15791337 33, 1 72 adyrg RPVVLNFWASWCGPCREEAPLFAKL aahpg 96 1.00 F 15805225 34, 1 78 taaqg KPVVINFWASWCVPCRQEAPLFSKL sqeta 102 1.00 F 15805374 37, 1 49 fitkn KIVVVDFWAEWCAPCLILAPVIEEL andyp 73 1.00 F 15899007 40, 1 61 easrq QPVLVDFWAPWCGPCKQLTPVIEKV vreaa 85 1.00 F 15966937 41, 1 61 sdfrg KTLLVNLWATWCVPCRKEMPALDEL qgkls 85 1.00 F 15988313 42, 1 60 qdakg KKVLLNFWATWCKPCRQEMPAMEKL qkeya 84 1.00 F 16078864 43, 1 53 llqdd LPMVIDFWAPWCGPCRSFAPIFAET aaera 77 1.00 F 16123427 46, 1 21 vlkad GAILVDFWAEWCGPCKMIAPILDEI adeyq 45 1.00 F 1633495 48, 1 34 vlqcp KPILVYFGAPWCGLCHFVKPLLNHL hgewq 58 1.00 F 1651717 49, 1 60 tlsee RPVLLYFWASWCGVCRFTTPAVAHL aaege 84 1.00 F 16759994 50, 1 53 llkdd LPVVIDFWAPWCGPCRNFAPIFEDV aeers 77 1.00 F 16761507 52, 1 19 iissh PKILLNFWAEWCAPCRCFWPTLEQF aemee 43 1.00 F 16804867 54, 1 22 vlsed KVVVVDFTATWCGPCRLVSPLMDQL adeyk 46 1.00 F 17229859 55, 1 18 vlegt GYVLVDYFSDGCVPCKALMPAVEEL skkye 42 1.00 F 1729944 56, 1 28 rqhpe KIIILDFYATWCGPCKAIAPLYKEL atthk 52 1.00 F 17531233 57, 1 27 ehlkg KIIGLYFSASWCPPCRAFTPKLKEF feeik 51 1.00 F 17537401 58, 1 63 safrg QPVVINFWAPWCGPCVEEMPELSAL aqeqk 87 1.00 F 17547503 59, 1 286 seykg KTIFLNFWATWCPPCRGEMPYIDEL ykeyn 310 1.00 F 18309723 61, 1 44 dsllg KKIGLYFSAAWCGPCQRFTPQLVEV ynels 68 1.00 F 18406743 61, 2 364 sdlvg KTILMYFSAHWCPPCRAFTPKLVEV ykqik 388 1.00 F 18406743 63, 1 15 sdfeg EVVVLNAWGQWCAPCRAEVDDLQLV qetld 39 1.00 F 19554157 64, 1 39 eeykg KVVVINFWATWCGYCVEEMPGFEKV ykefg 63 1.00 F 19705357 66, 1 7 agdfm KPMLLDFSATWCGPCRMQKPILEEL ekkyg 31 1.00 F 20092028 69, 1 103 adykg KVVVLNVWGSWCPPCRAEAKNFEKV yqdvk 127 1.00 F 21222859 74, 1 53 sdfkg ERVLINFWTTWCPPCRQEMPDMQRF yqdlq 77 1.00 F 23098307 76, 1 20 kylqh QRVVVDFSAEWCGPCRAIAPVFDKL sneft 44 1.00 F 267116 77, 1 81 aafkg KVSLVNVWASWCVPCHDEAPLLTEL gkdkr 105 1.00 F 27375582 78, 1 34 vtsdn DVVLADFYADWCGPCQMLEPVVETL aeqtd 58 1.00 F 2822332 79, 1 77 sdlkg KKVILNFWATWCGPCQQEMPDMEAF ykehk 101 1.00 F 30021713 80, 1 19 tisan SNVLVYFWAPLCAPCDLFTPTYEAS srkhf 43 1.00 F 3261501 82, 1 19 tietn PLVIVDFWAPWCGSCKMLGPVLEEV esevg 43 1.00 F 3323237 83, 1 17 ektah QAVVVNVGASWCPDCRKIEPIMENL aktyk 41 1.00 F 4155972 84, 1 79 vvnse TPVVVDFHAQWCGPCKILGPRLEKM vakqh 103 1.00 F 4200327 91, 1 20 nenkg RLIVVDFFAQWCGPCRNIAPKVEAL akeip 44 1.00 F 6687568 93, 1 18 llttn KKVVVDFYANWCGPCKILGPIFEEV aqdkk 42 1.00 F 7109697 94, 1 21 ilaed KLVVIDFYADWCGPCKIIAPKLDEL aqqys 45 1.00 F 7290567 96, 1 49 adlqg KVTLINFWFPSCPGCVSEMPKIIKT andyk 73 1.00 F 15677788 * ************** * * * ** ------------------------------------------------------------------------- MOTIF d Motif model (residue frequency x 100) ____________________________________________ Pos. # a v c d e f g h i w k l m n y p q r s t Info _____________________________________________________________________________________________ 1 | 2 . . 28 17 2 . 2 8 . . 17 . . 11 . . . 2 5 1.1 2 | 5 2 . . 5 34 . . . . 2 14 . . 17 . . 8 2 5 1.4 3 | 8 . . 5 11 . 14 . 2 . 28 . . 5 2 . . 17 . 2 1.0 4 | 2 . . 11 . . 62 . . . 5 . . 11 . . 2 . 2 . 2.1 5 | . . . . . . 2 . . . 57 . . 5 . . 5 22 5 . 2.2 7 | 2 68 . . . 2 5 . 2 . 2 . . 2 . . . . 2 8 1.9 8 | 2 62 . . . . . . 25 . . 8 . . . . . . . . 2.3 9 | . 8 . . . 8 . . 5 . . 77 . . . . . . . . 2.3 10 | 8 8 . . . 57 . . 2 . . 5 . . 11 . . . 2 2 2.1 11 | 14 2 . . . 62 8 . . . . . . . . . . . 11 . 2.4 12 | 2 11 . . . 14 . 11 2 5 . 5 . . 45 . . . . . 2.4 13 | . . . . . . . . . . . . . . . 100 . . . . 4.3 14 | 22 . . . . 2 28 2 . . 8 17 5 . 2 . . 8 . . 1.2 15 | 51 . . 42 . . . . . . . . . 2 . . . . 2 . 2.3 16 | . . . 2 . 71 2 . . 5 . . 5 . 5 . . . 5 . 2.9 17 | . . . . . . . . . . . . . . . . . . 11 88 3.6 18 | 5 . . . . 25 2 . . . . . . . . 51 2 . 11 . 2.4 19 | . 54 . . . . 20 . 8 . . . . . . . . . . 17 2.0 20 | . . 97 . . . . . . . . . . . . . . . 2 . 6.2 21 | 5 . . . . . . . . . . . . . . 28 2 . 20 42 2.3 22 | 14 2 . . . . 2 . . . 14 5 5 . . . 2 8 5 37 1.3 23 | . . . . 62 . . . . . 2 . . 8 . . 14 . 5 5 2.2 24 | 14 2 . . . 2 2 22 11 . . 31 11 . . . . . . . 1.8 27 | 2 2 . . 2 45 17 . 8 . . 8 . . 8 2 . . . . 1.6 28 | 11 . . 2 2 8 5 . . . . . . 2 14 . 5 22 22 . 1.4 nonsite 8 7 . 6 7 4 7 1 5 . 7 9 2 4 2 4 3 4 5 5 site 7 9 3 3 4 13 7 1 3 . 4 7 1 1 4 7 1 3 4 8 Motif probability model ____________________________________________ Pos. # a v c d e f g h i w k l m n y p q r s t ____________________________________________ 1 | 0.029 0.001 0.000 0.283 0.170 0.029 0.001 0.028 0.085 0.000 0.001 0.170 0.000 0.001 0.113 0.001 0.000 0.001 0.029 0.057 2 | 0.058 0.029 0.000 0.001 0.057 0.339 0.001 0.000 0.001 0.000 0.029 0.142 0.000 0.001 0.169 0.001 0.000 0.085 0.029 0.057 3 | 0.086 0.001 0.000 0.057 0.114 0.001 0.142 0.000 0.029 0.000 0.283 0.001 0.000 0.057 0.029 0.001 0.000 0.170 0.001 0.029 4 | 0.029 0.001 0.000 0.114 0.001 0.001 0.621 0.000 0.001 0.000 0.057 0.001 0.000 0.113 0.000 0.001 0.029 0.001 0.029 0.001 5 | 0.001 0.001 0.000 0.001 0.001 0.001 0.029 0.000 0.001 0.000 0.564 0.001 0.000 0.057 0.000 0.001 0.057 0.226 0.057 0.001 7 | 0.029 0.677 0.000 0.001 0.001 0.029 0.057 0.000 0.029 0.000 0.029 0.001 0.000 0.029 0.000 0.001 0.000 0.001 0.029 0.085 8 | 0.029 0.621 0.000 0.001 0.001 0.001 0.001 0.000 0.254 0.000 0.001 0.086 0.000 0.001 0.000 0.001 0.000 0.001 0.001 0.001 9 | 0.001 0.086 0.000 0.001 0.001 0.085 0.001 0.000 0.057 0.000 0.001 0.762 0.000 0.001 0.000 0.001 0.000 0.001 0.001 0.001 10 | 0.086 0.086 0.000 0.001 0.001 0.564 0.001 0.000 0.029 0.000 0.001 0.058 0.000 0.001 0.113 0.001 0.000 0.001 0.029 0.029 11 | 0.142 0.029 0.000 0.001 0.001 0.620 0.085 0.000 0.001 0.000 0.001 0.001 0.000 0.001 0.000 0.001 0.000 0.001 0.113 0.001 12 | 0.029 0.114 0.000 0.001 0.001 0.142 0.001 0.113 0.029 0.057 0.001 0.058 0.000 0.001 0.451 0.001 0.000 0.001 0.001 0.001 13 | 0.001 0.001 0.000 0.001 0.001 0.001 0.001 0.000 0.001 0.000 0.001 0.001 0.000 0.001 0.000 0.987 0.000 0.001 0.001 0.001 14 | 0.227 0.001 0.000 0.001 0.001 0.029 0.283 0.028 0.001 0.000 0.086 0.170 0.057 0.001 0.029 0.001 0.000 0.085 0.001 0.001 15 | 0.508 0.001 0.000 0.423 0.001 0.001 0.001 0.000 0.001 0.000 0.001 0.001 0.000 0.029 0.000 0.001 0.000 0.001 0.029 0.001 16 | 0.001 0.001 0.000 0.029 0.001 0.705 0.029 0.000 0.001 0.057 0.001 0.001 0.057 0.001 0.057 0.001 0.000 0.001 0.057 0.001 17 | 0.001 0.001 0.000 0.001 0.001 0.001 0.001 0.000 0.001 0.000 0.001 0.001 0.000 0.001 0.000 0.001 0.000 0.001 0.113 0.874 18 | 0.058 0.001 0.000 0.001 0.001 0.254 0.029 0.000 0.001 0.000 0.001 0.001 0.000 0.001 0.000 0.508 0.029 0.001 0.113 0.001 19 | 0.001 0.536 0.000 0.001 0.001 0.001 0.198 0.000 0.085 0.000 0.001 0.001 0.000 0.001 0.000 0.001 0.000 0.001 0.001 0.170 20 | 0.001 0.001 0.958 0.001 0.001 0.001 0.001 0.000 0.001 0.000 0.001 0.001 0.000 0.001 0.000 0.001 0.000 0.001 0.029 0.001 21 | 0.058 0.001 0.000 0.001 0.001 0.001 0.001 0.000 0.001 0.000 0.001 0.001 0.000 0.001 0.000 0.282 0.029 0.001 0.198 0.423 22 | 0.142 0.029 0.000 0.001 0.001 0.001 0.029 0.000 0.001 0.000 0.142 0.058 0.057 0.001 0.000 0.001 0.029 0.085 0.057 0.367 23 | 0.001 0.001 0.000 0.001 0.621 0.001 0.001 0.000 0.001 0.000 0.029 0.001 0.000 0.085 0.000 0.001 0.141 0.001 0.057 0.057 24 | 0.142 0.029 0.000 0.001 0.001 0.029 0.029 0.226 0.113 0.000 0.001 0.311 0.113 0.001 0.000 0.001 0.000 0.001 0.001 0.001 27 | 0.029 0.029 0.000 0.001 0.029 0.451 0.170 0.000 0.085 0.000 0.001 0.086 0.000 0.001 0.085 0.029 0.000 0.001 0.001 0.001 28 | 0.114 0.001 0.000 0.029 0.029 0.085 0.057 0.000 0.001 0.000 0.001 0.001 0.000 0.029 0.141 0.001 0.057 0.226 0.226 0.001 Background probability model 0.089 0.079 0.008 0.067 0.076 0.044 0.071 0.013 0.061 0.009 0.076 0.094 0.023 0.043 0.027 0.045 0.034 0.044 0.052 0.052 25 columns Num Motifs: 35 1, 1 37 ldfdk EFRDKTVVIVAIPGAFTPTCTANHIPPF vekft 64 1.00 F 1091044 2, 1 32 irlsd YRGKKYVILFFYPANFTAISPTELMLLS drise 59 1.00 F 11467494 6, 1 26 eikei DLKSNWNVFFFYPYSYSFICPLELKNIS nkike 53 1.00 F 13186328 8, 1 28 kirls SYRGKWVVLFFYPADFTFVCPTEVEGFA edyek 55 1.00 F 13541053 9, 1 26 mrkls EFRGQNVVLAFFPGAFTSVCTKEMCTFR dsman 53 1.00 F 13541117 13, 1 25 melpd EFEGKWFILFSHPADFTPVCTTEFVAFQ evype 52 1.00 F 14286173 15, 1 25 kirls DFRGRIVVLYFYPRAMTPGCTREGVRFN ellde 52 1.00 F 14600438 22, 1 26 vtlrg YRGAKNVLLVFFPLAFTGICQGELDQLR dhlpe 53 1.00 F 15609375 23, 1 30 nvsla DYRGRRVIVYFYPAASTPGCTKQACDFR dnlgd 57 1.00 F 15609658 24, 1 24 tvsls DFKGKNIVLYFYPKDMTPGCTTEACDFR drved 51 1.00 F 15613511 28, 1 20 tfthv DLYGKYTILFFFPKAGTSGCTREAVEFS renfe 47 1.00 F 15643152 30, 1 61 gltda LADNRAVVLFFYPFDFSPVCATELCAIQ narwf 88 1.00 F 15790738 35, 1 26 itlss YRGQSHVVLVFYPLDFSPVCSMQLPEYS gsqdd 53 1.00 F 15807234 36, 1 28 vnlae LFKGKKGVLFGVPGAFTPGCSKTHLPGF veqae 55 1.00 F 15826629 38, 1 26 vkips DFKGKVVVLAFYPAAFTSVCTKEMCTFR dsmak 53 1.00 F 15899339 39, 1 30 vttel LFKGKRVVLFAVPGAFTPTCSLNHLPGY lenrd 57 1.00 F 15964668 44, 1 50 fnlak ALKKGPVVLYFFPAAYTAGCTAEAREFA eatpe 77 1.00 F 16125919 47, 1 31 fnfkq HTNGKTTVLFFWPMDFTFVCPSELIAFD kryee 58 1.00 F 16501671 51, 1 33 slekn IEDDKWTILFFYPMDFTFVCPTEIVAIS arsde 60 1.00 F 16803644 53, 1 31 vttdd LFAGKTVAVFSLPGAFTPTCSSTHLPGY nelak 58 1.00 F 17229033 60, 1 28 rlsev LKRGRPVVLLFFPGAFTSVCTKELCTFR dkmal 55 1.00 F 18313548 62, 1 26 eislq DYIGKYVVLAFYPLDFTFVCPTEINRFS dlkga 53 1.00 F 19173077 67, 1 27 evtek DTEGRWSVFFFYPADFTFVCPTELGDVA dhyee 54 1.00 F 20151112 68, 1 29 vdtht LFTGRKVVLFAVPGAFTPTCSAKHLPGY veqfe 56 1.00 F 21112072 70, 1 32 qinhk TYEGQWKVVFAWPKDFTFVCPTEIAAFG klnde 59 1.00 F 21223405 71, 1 28 eihly DLKGKKVLLSFHPLAWTQVCAQQMKSLE enyel 55 1.00 F 21227878 73, 1 25 mvsls EFKGRKVLLIFYPGDDTPVCTAQLCDYR nnvaa 52 1.00 F 21674812 81, 1 28 irfhd FLGDSWGILFSHPRDFTPVCTTELGRAA klape 55 1.00 F 3318841 85, 1 10 eidin EYKGKYVVLLFYPLDWTFVCPTEMIGYS evagq 37 1.00 F 4433065 86, 1 32 vsvhs IAAGKKVILFGVPGAFTPTCSMSHVPGF igkae 59 1.00 F 4704732 87, 1 28 fdfyk YVGDNWAILFSHPHDFTPVCTTELAEFG kmhee 55 1.00 F 4996210 88, 1 41 ynask EFANKKVVLFALPGAFTPVCSANHVPEY iqklp 68 1.00 F 5326864 89, 1 88 slkki TENNRVVVFFVYPRASTPGCTRQACGFR dnyqe 115 1.00 F 6322180 90, 1 43 ewskl ISENKKVIITGAPAAFSPTCTVSHIPGY inyld 70 1.00 F 6323138 95, 1 31 evkls DYKGKYVVLFFYPLDFTFVCPTEIIAFS nraed 58 1.00 F 9955016 ***** ****************** ** Column 1 : Sequence Number, Site Number Column 2 : Left End Location Column 4 : Motif Element Column 5 : Right End Location Column 6 : Probability of Element Column 7 : Forward Motif (F) or Reverse Complement (R) Column 8 : Sequence Description from Fast A input Log Motif portion of MAP for motif d = -1668.31468 Log Fragmentation portion of MAP for motif d = -7.86327 ============================================================= ====== ELEMENTS OCCURRING GREATER THAN 50% OF THE TIME ===== ====== Motif d ===== ============================================================= Listing of those elements occurring greater than 50% of the time in near optimal sampling using 500 iterations Motif model (residue frequency x 100) ____________________________________________ Pos. # a v c d e f g h i w k l m n y p q r s t Info _____________________________________________________________________________________________ 1 | 2 . . 28 17 2 . 2 8 . . 17 . . 11 . . . 2 5 1.1 2 | 5 2 . . 5 34 . . . . 2 14 . . 17 . . 8 2 5 1.4 3 | 8 . . 5 11 . 14 . 2 . 28 . . 5 2 . . 17 . 2 1.0 4 | 2 . . 11 . . 62 . . . 5 . . 11 . . 2 . 2 . 2.1 5 | . . . . . . 2 . . . 57 . . 5 . . 5 22 5 . 2.2 7 | 2 68 . . . 2 5 . 2 . 2 . . 2 . . . . 2 8 1.9 8 | 2 62 . . . . . . 25 . . 8 . . . . . . . . 2.3 9 | . 8 . . . 8 . . 5 . . 77 . . . . . . . . 2.3 10 | 8 8 . . . 57 . . 2 . . 5 . . 11 . . . 2 2 2.1 11 | 14 2 . . . 62 8 . . . . . . . . . . . 11 . 2.4 12 | 2 11 . . . 14 . 11 2 5 . 5 . . 45 . . . . . 2.4 13 | . . . . . . . . . . . . . . . 100 . . . . 4.3 14 | 22 . . . . 2 28 2 . . 8 17 5 . 2 . . 8 . . 1.2 15 | 51 . . 42 . . . . . . . . . 2 . . . . 2 . 2.3 16 | . . . 2 . 71 2 . . 5 . . 5 . 5 . . . 5 . 2.9 17 | . . . . . . . . . . . . . . . . . . 11 88 3.6 18 | 5 . . . . 25 2 . . . . . . . . 51 2 . 11 . 2.4 19 | . 54 . . . . 20 . 8 . . . . . . . . . . 17 2.0 20 | . . 97 . . . . . . . . . . . . . . . 2 . 6.2 21 | 5 . . . . . . . . . . . . . . 28 2 . 20 42 2.3 22 | 14 2 . . . . 2 . . . 14 5 5 . . . 2 8 5 37 1.3 23 | . . . . 62 . . . . . 2 . . 8 . . 14 . 5 5 2.2 24 | 14 2 . . . 2 2 22 11 . . 31 11 . . . . . . . 1.8 27 | 2 2 . . 2 45 17 . 8 . . 8 . . 8 2 . . . . 1.6 28 | 11 . . 2 2 8 5 . . . . . . 2 14 . 5 22 22 . 1.4 nonsite 8 7 . 6 7 4 7 1 5 . 7 9 2 4 2 4 3 4 5 5 site 7 9 3 3 4 13 7 1 3 . 4 7 1 1 4 7 1 3 4 8 Motif probability model ____________________________________________ Pos. # a v c d e f g h i w k l m n y p q r s t ____________________________________________ 1 | 0.029 0.001 0.000 0.283 0.170 0.029 0.001 0.028 0.085 0.000 0.001 0.170 0.000 0.001 0.113 0.001 0.000 0.001 0.029 0.057 2 | 0.058 0.029 0.000 0.001 0.057 0.339 0.001 0.000 0.001 0.000 0.029 0.142 0.000 0.001 0.169 0.001 0.000 0.085 0.029 0.057 3 | 0.086 0.001 0.000 0.057 0.114 0.001 0.142 0.000 0.029 0.000 0.283 0.001 0.000 0.057 0.029 0.001 0.000 0.170 0.001 0.029 4 | 0.029 0.001 0.000 0.114 0.001 0.001 0.621 0.000 0.001 0.000 0.057 0.001 0.000 0.113 0.000 0.001 0.029 0.001 0.029 0.001 5 | 0.001 0.001 0.000 0.001 0.001 0.001 0.029 0.000 0.001 0.000 0.564 0.001 0.000 0.057 0.000 0.001 0.057 0.226 0.057 0.001 7 | 0.029 0.677 0.000 0.001 0.001 0.029 0.057 0.000 0.029 0.000 0.029 0.001 0.000 0.029 0.000 0.001 0.000 0.001 0.029 0.085 8 | 0.029 0.621 0.000 0.001 0.001 0.001 0.001 0.000 0.254 0.000 0.001 0.086 0.000 0.001 0.000 0.001 0.000 0.001 0.001 0.001 9 | 0.001 0.086 0.000 0.001 0.001 0.085 0.001 0.000 0.057 0.000 0.001 0.762 0.000 0.001 0.000 0.001 0.000 0.001 0.001 0.001 10 | 0.086 0.086 0.000 0.001 0.001 0.564 0.001 0.000 0.029 0.000 0.001 0.058 0.000 0.001 0.113 0.001 0.000 0.001 0.029 0.029 11 | 0.142 0.029 0.000 0.001 0.001 0.620 0.085 0.000 0.001 0.000 0.001 0.001 0.000 0.001 0.000 0.001 0.000 0.001 0.113 0.001 12 | 0.029 0.114 0.000 0.001 0.001 0.142 0.001 0.113 0.029 0.057 0.001 0.058 0.000 0.001 0.451 0.001 0.000 0.001 0.001 0.001 13 | 0.001 0.001 0.000 0.001 0.001 0.001 0.001 0.000 0.001 0.000 0.001 0.001 0.000 0.001 0.000 0.987 0.000 0.001 0.001 0.001 14 | 0.227 0.001 0.000 0.001 0.001 0.029 0.283 0.028 0.001 0.000 0.086 0.170 0.057 0.001 0.029 0.001 0.000 0.085 0.001 0.001 15 | 0.508 0.001 0.000 0.423 0.001 0.001 0.001 0.000 0.001 0.000 0.001 0.001 0.000 0.029 0.000 0.001 0.000 0.001 0.029 0.001 16 | 0.001 0.001 0.000 0.029 0.001 0.705 0.029 0.000 0.001 0.057 0.001 0.001 0.057 0.001 0.057 0.001 0.000 0.001 0.057 0.001 17 | 0.001 0.001 0.000 0.001 0.001 0.001 0.001 0.000 0.001 0.000 0.001 0.001 0.000 0.001 0.000 0.001 0.000 0.001 0.113 0.874 18 | 0.058 0.001 0.000 0.001 0.001 0.254 0.029 0.000 0.001 0.000 0.001 0.001 0.000 0.001 0.000 0.508 0.029 0.001 0.113 0.001 19 | 0.001 0.536 0.000 0.001 0.001 0.001 0.198 0.000 0.085 0.000 0.001 0.001 0.000 0.001 0.000 0.001 0.000 0.001 0.001 0.170 20 | 0.001 0.001 0.958 0.001 0.001 0.001 0.001 0.000 0.001 0.000 0.001 0.001 0.000 0.001 0.000 0.001 0.000 0.001 0.029 0.001 21 | 0.058 0.001 0.000 0.001 0.001 0.001 0.001 0.000 0.001 0.000 0.001 0.001 0.000 0.001 0.000 0.282 0.029 0.001 0.198 0.423 22 | 0.142 0.029 0.000 0.001 0.001 0.001 0.029 0.000 0.001 0.000 0.142 0.058 0.057 0.001 0.000 0.001 0.029 0.085 0.057 0.367 23 | 0.001 0.001 0.000 0.001 0.621 0.001 0.001 0.000 0.001 0.000 0.029 0.001 0.000 0.085 0.000 0.001 0.141 0.001 0.057 0.057 24 | 0.142 0.029 0.000 0.001 0.001 0.029 0.029 0.226 0.113 0.000 0.001 0.311 0.113 0.001 0.000 0.001 0.000 0.001 0.001 0.001 27 | 0.029 0.029 0.000 0.001 0.029 0.451 0.170 0.000 0.085 0.000 0.001 0.086 0.000 0.001 0.085 0.029 0.000 0.001 0.001 0.001 28 | 0.114 0.001 0.000 0.029 0.029 0.085 0.057 0.000 0.001 0.000 0.001 0.001 0.000 0.029 0.141 0.001 0.057 0.226 0.226 0.001 Background probability model 0.089 0.079 0.008 0.067 0.076 0.044 0.071 0.013 0.061 0.009 0.076 0.094 0.023 0.043 0.027 0.045 0.034 0.044 0.052 0.052 25 columns Num Motifs: 35 1, 1 37 ldfdk EFRDKTVVIVAIPGAFTPTCTANHIPPF vekft 64 1.00 F 1091044 2, 1 32 irlsd YRGKKYVILFFYPANFTAISPTELMLLS drise 59 1.00 F 11467494 6, 1 26 eikei DLKSNWNVFFFYPYSYSFICPLELKNIS nkike 53 0.98 F 13186328 8, 1 28 kirls SYRGKWVVLFFYPADFTFVCPTEVEGFA edyek 55 1.00 F 13541053 9, 1 26 mrkls EFRGQNVVLAFFPGAFTSVCTKEMCTFR dsman 53 1.00 F 13541117 13, 1 25 melpd EFEGKWFILFSHPADFTPVCTTEFVAFQ evype 52 1.00 F 14286173 15, 1 25 kirls DFRGRIVVLYFYPRAMTPGCTREGVRFN ellde 52 1.00 F 14600438 22, 1 26 vtlrg YRGAKNVLLVFFPLAFTGICQGELDQLR dhlpe 53 1.00 F 15609375 23, 1 30 nvsla DYRGRRVIVYFYPAASTPGCTKQACDFR dnlgd 57 1.00 F 15609658 24, 1 24 tvsls DFKGKNIVLYFYPKDMTPGCTTEACDFR drved 51 1.00 F 15613511 28, 1 20 tfthv DLYGKYTILFFFPKAGTSGCTREAVEFS renfe 47 1.00 F 15643152 30, 1 61 gltda LADNRAVVLFFYPFDFSPVCATELCAIQ narwf 88 1.00 F 15790738 35, 1 26 itlss YRGQSHVVLVFYPLDFSPVCSMQLPEYS gsqdd 53 1.00 F 15807234 36, 1 28 vnlae LFKGKKGVLFGVPGAFTPGCSKTHLPGF veqae 55 1.00 F 15826629 38, 1 26 vkips DFKGKVVVLAFYPAAFTSVCTKEMCTFR dsmak 53 1.00 F 15899339 39, 1 30 vttel LFKGKRVVLFAVPGAFTPTCSLNHLPGY lenrd 57 1.00 F 15964668 44, 1 50 fnlak ALKKGPVVLYFFPAAYTAGCTAEAREFA eatpe 77 1.00 F 16125919 47, 1 31 fnfkq HTNGKTTVLFFWPMDFTFVCPSELIAFD kryee 58 1.00 F 16501671 51, 1 33 slekn IEDDKWTILFFYPMDFTFVCPTEIVAIS arsde 60 1.00 F 16803644 53, 1 31 vttdd LFAGKTVAVFSLPGAFTPTCSSTHLPGY nelak 58 1.00 F 17229033 60, 1 28 rlsev LKRGRPVVLLFFPGAFTSVCTKELCTFR dkmal 55 1.00 F 18313548 62, 1 26 eislq DYIGKYVVLAFYPLDFTFVCPTEINRFS dlkga 53 1.00 F 19173077 67, 1 27 evtek DTEGRWSVFFFYPADFTFVCPTELGDVA dhyee 54 1.00 F 20151112 68, 1 29 vdtht LFTGRKVVLFAVPGAFTPTCSAKHLPGY veqfe 56 1.00 F 21112072 70, 1 32 qinhk TYEGQWKVVFAWPKDFTFVCPTEIAAFG klnde 59 1.00 F 21223405 71, 1 28 eihly DLKGKKVLLSFHPLAWTQVCAQQMKSLE enyel 55 1.00 F 21227878 73, 1 25 mvsls EFKGRKVLLIFYPGDDTPVCTAQLCDYR nnvaa 52 1.00 F 21674812 81, 1 28 irfhd FLGDSWGILFSHPRDFTPVCTTELGRAA klape 55 1.00 F 3318841 85, 1 10 eidin EYKGKYVVLLFYPLDWTFVCPTEMIGYS evagq 37 1.00 F 4433065 86, 1 32 vsvhs IAAGKKVILFGVPGAFTPTCSMSHVPGF igkae 59 1.00 F 4704732 87, 1 28 fdfyk YVGDNWAILFSHPHDFTPVCTTELAEFG kmhee 55 1.00 F 4996210 88, 1 41 ynask EFANKKVVLFALPGAFTPVCSANHVPEY iqklp 68 1.00 F 5326864 89, 1 88 slkki TENNRVVVFFVYPRASTPGCTRQACGFR dnyqe 115 1.00 F 6322180 90, 1 43 ewskl ISENKKVIITGAPAAFSPTCTVSHIPGY inyld 70 0.99 F 6323138 95, 1 31 evkls DYKGKYVVLFFYPLDFTFVCPTEIIAFS nraed 58 1.00 F 9955016 ***** ****************** ** Log Background portion of Map = -39912.17887 Log Alignment portion of Map = -957.33606 Log Site/seq portion of Map = 0.00000 Log Null Map = -46943.36311 Log Map = 2111.15797 log MAP = sum of motif and fragmentation parts of MAP + background + alignment + sites/seq - Null ============================================================= ====== Results by Sequence ===== ====== ELEMENTS OCCURRING GREATER THAN 50% OF THE TIME ===== ============================================================= 1, 1, 3 37 ldfdk EFRDKTVVIVAIPGAFTPTCTANHIPPF vekft 64 1.00 F 1091044 2, 1, 3 32 irlsd YRGKKYVILFFYPANFTAISPTELMLLS drise 59 1.00 F 11467494 2, 2, 0 72 klstq ILAISVDSPFSH lqyll 83 1.00 F 11467494 2, 3, 1 161 riles IQYVKENPGYACPVNWNFG dqvfy 179 1.00 F 11467494 3, 1, 2 17 viqsd KLVVVDFYADWCMPCRYISPILEKL skeyn 41 1.00 F 11499727 4, 1, 2 22 llntt QYVVADFYADWCGPCKAIAPMYAQF aktfs 46 1.00 F 1174686 5, 1, 2 19 ifsak KNVIVDFWAAWCGPCKLTSPEFQKA adefs 43 1.00 F 12044976 6, 1, 3 26 eikei DLKSNWNVFFFYPYSYSFICPLELKNIS nkike 53 0.98 F 13186328 6, 2, 0 66 nlntk IYAISNDSHFVQ knwie 77 1.00 F 13186328 7, 1, 2 21 kenhs KPILIDFYADWCPPCRMLIPVLDSI ekkhg 45 1.00 F 13358154 8, 1, 3 28 kirls SYRGKWVVLFFYPADFTFVCPTEVEGFA edyek 55 1.00 F 13541053 8, 2, 0 68 kknte VISVSEDTVYVH kawvq 79 1.00 F 13541053 9, 1, 3 26 mrkls EFRGQNVVLAFFPGAFTSVCTKEMCTFR dsman 53 1.00 F 13541117 9, 2, 0 66 kfkak VIGISVDSPFSL aefak 77 1.00 F 13541117 10, 1, 2 17 aetse GVVLADFWAPWCGPCKMIAPVLEEL dqemg 41 1.00 F 135765 11, 1, 2 29 akesn KLIVIDFTASWCPPCRMIAPIFNDL akkfm 53 1.00 F 1388082 12, 1, 2 44 likqn DKLVIDFYATWCGPCKMMQPHLTKL iqayp 68 1.00 F 140543 13, 1, 3 25 melpd EFEGKWFILFSHPADFTPVCTTEFVAFQ evype 52 1.00 F 14286173 13, 2, 0 65 eldce LVGLSVDQVFSH ikwie 76 0.98 F 14286173 14, 1, 2 80 selrg KVVMLQFTASWCGVCRKEMPFIEKD iwlkh 104 1.00 F 14578634 15, 1, 3 25 kirls DFRGRIVVLYFYPRAMTPGCTREGVRFN ellde 52 1.00 F 14600438 15, 2, 0 65 klgav VIGVSTDSVEKN rkfae 76 1.00 F 14600438 16, 1, 2 23 lqnsd KPVLVDFYATWCGPCQLMVPILNEV setlk 47 1.00 F 15218394 17, 1, 2 157 adfrg RPLVINLWASWCPPCRREMPVLQQA qaenp 181 1.00 F 15597673 18, 1, 2 26 ensfh KPVLVDFWADWCAPCKALMPLLAQI aesyq 50 1.00 F 15599256 19, 1, 2 67 negkg KTILLNFWSETCGVCIAELKTFEQL lqsyp 91 1.00 F 15602312 20, 1, 2 61 eefkg KVLLINFWATWCPPCKEEIPMFKEI yekyr 85 1.00 F 15605725 21, 1, 0 80 megvd VTVVSMDLPFAQ krfce 91 0.65 F 15605963 22, 1, 3 26 vtlrg YRGAKNVLLVFFPLAFTGICQGELDQLR dhlpe 53 1.00 F 15609375 23, 1, 3 30 nvsla DYRGRRVIVYFYPAASTPGCTKQACDFR dnlgd 57 1.00 F 15609658 23, 2, 0 70 tagln VVGISPDKPEKL atfrd 81 0.99 F 15609658 24, 1, 3 24 tvsls DFKGKNIVLYFYPKDMTPGCTTEACDFR drved 51 1.00 F 15613511 24, 2, 0 64 glntv ILGVSPDPVERH kkfie 75 1.00 F 15613511 25, 1, 2 60 sdyrg DVVILNVWASWCEPCRKEMPALMEL qsdye 84 1.00 F 15614085 26, 1, 2 63 releg KGVFLNFWGTYCPPCEREMPHMEKL ygeyk 87 1.00 F 15614140 27, 1, 2 72 sslrg QPVILHFFATWCPVCQDEMPSLVKL dkeyr 96 1.00 F 15615431 28, 1, 3 20 tfthv DLYGKYTILFFFPKAGTSGCTREAVEFS renfe 47 1.00 F 15643152 28, 2, 0 56 fekaq VVGISRDSVEAL krfke 67 1.00 F 15643152 30, 1, 3 61 gltda LADNRAVVLFFYPFDFSPVCATELCAIQ narwf 88 1.00 F 15790738 30, 2, 0 101 tpgla VWGISPDSTYAH eafad 112 0.98 F 15790738 31, 1, 2 2 m TVTLKDFYADWCGPCKTQDPILEEL eadyd 26 1.00 F 15791337 32, 1, 0 80 idntv VLCISADLPFAQ srfcg 91 0.99 F 15801846 33, 1, 2 72 adyrg RPVVLNFWASWCGPCREEAPLFAKL aahpg 96 1.00 F 15805225 34, 1, 2 78 taaqg KPVVINFWASWCVPCRQEAPLFSKL sqeta 102 1.00 F 15805374 35, 1, 3 26 itlss YRGQSHVVLVFYPLDFSPVCSMQLPEYS gsqdd 53 1.00 F 15807234 35, 2, 0 66 eagav VLGINRDSVYAH rawaa 77 1.00 F 15807234 36, 1, 3 28 vnlae LFKGKKGVLFGVPGAFTPGCSKTHLPGF veqae 55 1.00 F 15826629 37, 1, 2 49 fitkn KIVVVDFWAEWCAPCLILAPVIEEL andyp 73 1.00 F 15899007 38, 1, 3 26 vkips DFKGKVVVLAFYPAAFTSVCTKEMCTFR dsmak 53 1.00 F 15899339 38, 2, 0 66 evnav VIGISVDPPFSN kafke 77 1.00 F 15899339 39, 1, 3 30 vttel LFKGKRVVLFAVPGAFTPTCSLNHLPGY lenrd 57 1.00 F 15964668 40, 1, 2 61 easrq QPVLVDFWAPWCGPCKQLTPVIEKV vreaa 85 1.00 F 15966937 41, 1, 2 61 sdfrg KTLLVNLWATWCVPCRKEMPALDEL qgkls 85 1.00 F 15988313 42, 1, 2 60 qdakg KKVLLNFWATWCKPCRQEMPAMEKL qkeya 84 1.00 F 16078864 43, 1, 2 53 llqdd LPMVIDFWAPWCGPCRSFAPIFAET aaera 77 1.00 F 16123427 44, 1, 3 50 fnlak ALKKGPVVLYFFPAAYTAGCTAEAREFA eatpe 77 1.00 F 16125919 46, 1, 2 21 vlkad GAILVDFWAEWCGPCKMIAPILDEI adeyq 45 1.00 F 1633495 47, 1, 3 31 fnfkq HTNGKTTVLFFWPMDFTFVCPSELIAFD kryee 58 1.00 F 16501671 47, 2, 0 71 krgve VVGVSFDSEFVH nawrn 82 1.00 F 16501671 47, 3, 1 160 lrmvd ALQFHEEHGDVCPAQWEKG kegmn 178 1.00 F 16501671 48, 1, 2 34 vlqcp KPILVYFGAPWCGLCHFVKPLLNHL hgewq 58 1.00 F 1651717 49, 1, 2 60 tlsee RPVLLYFWASWCGVCRFTTPAVAHL aaege 84 1.00 F 16759994 50, 1, 2 53 llkdd LPVVIDFWAPWCGPCRNFAPIFEDV aeers 77 1.00 F 16761507 51, 1, 3 33 slekn IEDDKWTILFFYPMDFTFVCPTEIVAIS arsde 60 1.00 F 16803644 52, 1, 2 19 iissh PKILLNFWAEWCAPCRCFWPTLEQF aemee 43 1.00 F 16804867 53, 1, 3 31 vttdd LFAGKTVAVFSLPGAFTPTCSSTHLPGY nelak 58 1.00 F 17229033 54, 1, 2 22 vlsed KVVVVDFTATWCGPCRLVSPLMDQL adeyk 46 1.00 F 17229859 55, 1, 2 18 vlegt GYVLVDYFSDGCVPCKALMPAVEEL skkye 42 1.00 F 1729944 56, 1, 2 28 rqhpe KIIILDFYATWCGPCKAIAPLYKEL atthk 52 1.00 F 17531233 57, 1, 2 27 ehlkg KIIGLYFSASWCPPCRAFTPKLKEF feeik 51 1.00 F 17537401 58, 1, 2 63 safrg QPVVINFWAPWCGPCVEEMPELSAL aqeqk 87 1.00 F 17547503 59, 1, 2 286 seykg KTIFLNFWATWCPPCRGEMPYIDEL ykeyn 310 1.00 F 18309723 60, 1, 3 28 rlsev LKRGRPVVLLFFPGAFTSVCTKELCTFR dkmal 55 1.00 F 18313548 60, 2, 0 68 kanae VLAISVDSPFAL kafkd 79 1.00 F 18313548 61, 1, 2 44 dsllg KKIGLYFSAAWCGPCQRFTPQLVEV ynels 68 1.00 F 18406743 61, 2, 2 364 sdlvg KTILMYFSAHWCPPCRAFTPKLVEV ykqik 388 1.00 F 18406743 62, 1, 3 26 eislq DYIGKYVVLAFYPLDFTFVCPTEINRFS dlkga 53 1.00 F 19173077 62, 2, 0 66 rrnav VLLISCDSVYTH kawas 77 1.00 F 19173077 63, 1, 2 15 sdfeg EVVVLNAWGQWCAPCRAEVDDLQLV qetld 39 1.00 F 19554157 64, 1, 2 39 eeykg KVVVINFWATWCGYCVEEMPGFEKV ykefg 63 1.00 F 19705357 66, 1, 2 7 agdfm KPMLLDFSATWCGPCRMQKPILEEL ekkyg 31 1.00 F 20092028 67, 1, 3 27 evtek DTEGRWSVFFFYPADFTFVCPTELGDVA dhyee 54 1.00 F 20151112 67, 2, 0 67 klgvd VYSVSTDTHFTH kawhs 78 1.00 F 20151112 67, 3, 1 154 rkika AQYVAAHPGEVCPAKWKEG eatla 172 1.00 F 20151112 68, 1, 3 29 vdtht LFTGRKVVLFAVPGAFTPTCSAKHLPGY veqfe 56 1.00 F 21112072 69, 1, 2 103 adykg KVVVLNVWGSWCPPCRAEAKNFEKV yqdvk 127 1.00 F 21222859 70, 1, 3 32 qinhk TYEGQWKVVFAWPKDFTFVCPTEIAAFG klnde 59 1.00 F 21223405 70, 2, 0 72 drdaq ILGFSGDSEFVH hawrk 83 1.00 F 21223405 71, 1, 3 28 eihly DLKGKKVLLSFHPLAWTQVCAQQMKSLE enyel 55 1.00 F 21227878 72, 1, 0 78 keegi VLTISADLPFAQ krwca 89 0.99 F 21283385 73, 1, 3 25 mvsls EFKGRKVLLIFYPGDDTPVCTAQLCDYR nnvaa 52 1.00 F 21674812 73, 2, 0 65 srgit VIGISGDSPESH kqfae 76 1.00 F 21674812 74, 1, 2 53 sdfkg ERVLINFWTTWCPPCRQEMPDMQRF yqdlq 77 1.00 F 23098307 76, 1, 2 20 kylqh QRVVVDFSAEWCGPCRAIAPVFDKL sneft 44 1.00 F 267116 77, 1, 2 81 aafkg KVSLVNVWASWCVPCHDEAPLLTEL gkdkr 105 1.00 F 27375582 78, 1, 2 34 vtsdn DVVLADFYADWCGPCQMLEPVVETL aeqtd 58 1.00 F 2822332 79, 1, 2 77 sdlkg KKVILNFWATWCGPCQQEMPDMEAF ykehk 101 1.00 F 30021713 80, 1, 2 19 tisan SNVLVYFWAPLCAPCDLFTPTYEAS srkhf 43 1.00 F 3261501 81, 1, 3 28 irfhd FLGDSWGILFSHPRDFTPVCTTELGRAA klape 55 1.00 F 3318841 81, 2, 0 68 krnvk LIALSIDSVEDH lawsk 79 1.00 F 3318841 81, 3, 1 166 lrvvi SLQLTAEKRVATPVDWKDG dsvmv 184 1.00 F 3318841 82, 1, 2 19 tietn PLVIVDFWAPWCGSCKMLGPVLEEV esevg 43 1.00 F 3323237 83, 1, 2 17 ektah QAVVVNVGASWCPDCRKIEPIMENL aktyk 41 1.00 F 4155972 84, 1, 2 79 vvnse TPVVVDFHAQWCGPCKILGPRLEKM vakqh 103 1.00 F 4200327 85, 1, 3 10 eidin EYKGKYVVLLFYPLDWTFVCPTEMIGYS evagq 37 1.00 F 4433065 85, 2, 0 50 eince VIGVSVDSVYCH qawce 61 1.00 F 4433065 86, 1, 3 32 vsvhs IAAGKKVILFGVPGAFTPTCSMSHVPGF igkae 59 1.00 F 4704732 87, 1, 3 28 fdfyk YVGDNWAILFSHPHDFTPVCTTELAEFG kmhee 55 1.00 F 4996210 87, 2, 0 68 klnck LIGFSCNSKESH dqwie 79 0.56 F 4996210 87, 3, 1 163 lrvlk SLQLTNTHPVATPVNWKEG dkcci 181 1.00 F 4996210 88, 1, 3 41 ynask EFANKKVVLFALPGAFTPVCSANHVPEY iqklp 68 1.00 F 5326864 89, 1, 3 88 slkki TENNRVVVFFVYPRASTPGCTRQACGFR dnyqe 115 1.00 F 6322180 89, 2, 0 127 kkyaa VFGLSADSVTSQ kkfqs 138 0.51 F 6322180 90, 1, 3 43 ewskl ISENKKVIITGAPAAFSPTCTVSHIPGY inyld 70 0.99 F 6323138 91, 1, 2 20 nenkg RLIVVDFFAQWCGPCRNIAPKVEAL akeip 44 1.00 F 6687568 92, 1, 0 68 klgve VLSVSVDSVFVH kmwnd 79 1.00 F 6850955 93, 1, 2 18 llttn KKVVVDFYANWCGPCKILGPIFEEV aqdkk 42 1.00 F 7109697 94, 1, 2 21 ilaed KLVVIDFYADWCGPCKIIAPKLDEL aqqys 45 1.00 F 7290567 95, 1, 3 31 evkls DYKGKYVVLFFYPLDFTFVCPTEIIAFS nraed 58 1.00 F 9955016 95, 2, 0 71 klgce VLGVSVDSQFTH lawin 82 1.00 F 9955016 95, 3, 1 160 lrlvq AFQYTDEHGEVCPAGWKPG sdtik 178 1.00 F 9955016 96, 1, 2 49 adlqg KVTLINFWFPSCPGCVSEMPKIIKT andyk 73 1.00 F 15677788 122 motifs Column 1 : Sequence Number, Site Number Column 2 : Motif type Column 3 : Left End Location Column 4 : Motif Element Column 5 : Right End Location Column 6 : Probability of Element Column 7 : Forward Motif (F) or Reverse Complement (R) Column 8 : Sequence Description from Fast A input ======================== MAP MAXIMIZATION RESULTS ==================== ====================================================================== ============================================================= ====== Results by Sequence ===== ============================================================= 1, 1, 3 37 ldfdk EFRDKTVVIVAIPGAFTPTCTANHIPPF vekft 64 1.00 F 1091044 1, 2, 0 79 agvda VIVLSANDPFVQ safgk 90 0.48 F 1091044 2, 1, 3 32 irlsd YRGKKYVILFFYPANFTAISPTELMLLS drise 59 1.00 F 11467494 2, 2, 0 72 klstq ILAISVDSPFSH lqyll 83 1.00 F 11467494 2, 3, 1 161 riles IQYVKENPGYACPVNWNFG dqvfy 179 1.00 F 11467494 3, 1, 2 17 viqsd KLVVVDFYADWCMPCRYISPILEKL skeyn 41 1.00 F 11499727 4, 1, 2 22 llntt QYVVADFYADWCGPCKAIAPMYAQF aktfs 46 1.00 F 1174686 5, 1, 2 19 ifsak KNVIVDFWAAWCGPCKLTSPEFQKA adefs 43 1.00 F 12044976 6, 1, 3 26 eikei DLKSNWNVFFFYPYSYSFICPLELKNIS nkike 53 0.98 F 13186328 6, 2, 0 66 nlntk IYAISNDSHFVQ knwie 77 1.00 F 13186328 7, 1, 2 21 kenhs KPILIDFYADWCPPCRMLIPVLDSI ekkhg 45 1.00 F 13358154 8, 1, 3 28 kirls SYRGKWVVLFFYPADFTFVCPTEVEGFA edyek 55 1.00 F 13541053 8, 2, 0 68 kknte VISVSEDTVYVH kawvq 79 1.00 F 13541053 9, 1, 3 26 mrkls EFRGQNVVLAFFPGAFTSVCTKEMCTFR dsman 53 1.00 F 13541117 9, 2, 0 66 kfkak VIGISVDSPFSL aefak 77 1.00 F 13541117 10, 1, 2 17 aetse GVVLADFWAPWCGPCKMIAPVLEEL dqemg 41 1.00 F 135765 11, 1, 2 29 akesn KLIVIDFTASWCPPCRMIAPIFNDL akkfm 53 1.00 F 1388082 12, 1, 2 44 likqn DKLVIDFYATWCGPCKMMQPHLTKL iqayp 68 1.00 F 140543 13, 1, 3 25 melpd EFEGKWFILFSHPADFTPVCTTEFVAFQ evype 52 1.00 F 14286173 13, 2, 0 65 eldce LVGLSVDQVFSH ikwie 76 0.98 F 14286173 14, 1, 2 80 selrg KVVMLQFTASWCGVCRKEMPFIEKD iwlkh 104 1.00 F 14578634 15, 1, 3 25 kirls DFRGRIVVLYFYPRAMTPGCTREGVRFN ellde 52 1.00 F 14600438 15, 2, 0 65 klgav VIGVSTDSVEKN rkfae 76 1.00 F 14600438 16, 1, 2 23 lqnsd KPVLVDFYATWCGPCQLMVPILNEV setlk 47 1.00 F 15218394 17, 1, 2 157 adfrg RPLVINLWASWCPPCRREMPVLQQA qaenp 181 1.00 F 15597673 18, 1, 2 26 ensfh KPVLVDFWADWCAPCKALMPLLAQI aesyq 50 1.00 F 15599256 19, 1, 2 67 negkg KTILLNFWSETCGVCIAELKTFEQL lqsyp 91 1.00 F 15602312 20, 1, 2 61 eefkg KVLLINFWATWCPPCKEEIPMFKEI yekyr 85 1.00 F 15605725 21, 1, 0 80 megvd VTVVSMDLPFAQ krfce 91 0.65 F 15605963 22, 1, 3 26 vtlrg YRGAKNVLLVFFPLAFTGICQGELDQLR dhlpe 53 1.00 F 15609375 23, 1, 3 30 nvsla DYRGRRVIVYFYPAASTPGCTKQACDFR dnlgd 57 1.00 F 15609658 23, 2, 0 70 tagln VVGISPDKPEKL atfrd 81 0.99 F 15609658 24, 1, 3 24 tvsls DFKGKNIVLYFYPKDMTPGCTTEACDFR drved 51 1.00 F 15613511 24, 2, 0 64 glntv ILGVSPDPVERH kkfie 75 1.00 F 15613511 25, 1, 2 60 sdyrg DVVILNVWASWCEPCRKEMPALMEL qsdye 84 1.00 F 15614085 26, 1, 2 63 releg KGVFLNFWGTYCPPCEREMPHMEKL ygeyk 87 1.00 F 15614140 27, 1, 2 72 sslrg QPVILHFFATWCPVCQDEMPSLVKL dkeyr 96 1.00 F 15615431 28, 1, 3 20 tfthv DLYGKYTILFFFPKAGTSGCTREAVEFS renfe 47 1.00 F 15643152 28, 2, 0 56 fekaq VVGISRDSVEAL krfke 67 1.00 F 15643152 30, 1, 3 61 gltda LADNRAVVLFFYPFDFSPVCATELCAIQ narwf 88 1.00 F 15790738 30, 2, 0 101 tpgla VWGISPDSTYAH eafad 112 0.98 F 15790738 31, 1, 2 2 m TVTLKDFYADWCGPCKTQDPILEEL eadyd 26 1.00 F 15791337 32, 1, 0 80 idntv VLCISADLPFAQ srfcg 91 0.99 F 15801846 33, 1, 2 72 adyrg RPVVLNFWASWCGPCREEAPLFAKL aahpg 96 1.00 F 15805225 34, 1, 2 78 taaqg KPVVINFWASWCVPCRQEAPLFSKL sqeta 102 1.00 F 15805374 35, 1, 3 26 itlss YRGQSHVVLVFYPLDFSPVCSMQLPEYS gsqdd 53 1.00 F 15807234 35, 2, 0 66 eagav VLGINRDSVYAH rawaa 77 1.00 F 15807234 36, 1, 3 28 vnlae LFKGKKGVLFGVPGAFTPGCSKTHLPGF veqae 55 1.00 F 15826629 37, 1, 2 49 fitkn KIVVVDFWAEWCAPCLILAPVIEEL andyp 73 1.00 F 15899007 38, 1, 3 26 vkips DFKGKVVVLAFYPAAFTSVCTKEMCTFR dsmak 53 1.00 F 15899339 38, 2, 0 66 evnav VIGISVDPPFSN kafke 77 1.00 F 15899339 39, 1, 3 30 vttel LFKGKRVVLFAVPGAFTPTCSLNHLPGY lenrd 57 1.00 F 15964668 40, 1, 2 61 easrq QPVLVDFWAPWCGPCKQLTPVIEKV vreaa 85 1.00 F 15966937 41, 1, 2 61 sdfrg KTLLVNLWATWCVPCRKEMPALDEL qgkls 85 1.00 F 15988313 42, 1, 2 60 qdakg KKVLLNFWATWCKPCRQEMPAMEKL qkeya 84 1.00 F 16078864 43, 1, 2 53 llqdd LPMVIDFWAPWCGPCRSFAPIFAET aaera 77 1.00 F 16123427 44, 1, 3 50 fnlak ALKKGPVVLYFFPAAYTAGCTAEAREFA eatpe 77 1.00 F 16125919 46, 1, 2 21 vlkad GAILVDFWAEWCGPCKMIAPILDEI adeyq 45 1.00 F 1633495 47, 1, 3 31 fnfkq HTNGKTTVLFFWPMDFTFVCPSELIAFD kryee 58 1.00 F 16501671 47, 2, 0 71 krgve VVGVSFDSEFVH nawrn 82 1.00 F 16501671 47, 3, 1 160 lrmvd ALQFHEEHGDVCPAQWEKG kegmn 178 1.00 F 16501671 48, 1, 2 34 vlqcp KPILVYFGAPWCGLCHFVKPLLNHL hgewq 58 1.00 F 1651717 49, 1, 2 60 tlsee RPVLLYFWASWCGVCRFTTPAVAHL aaege 84 1.00 F 16759994 50, 1, 2 53 llkdd LPVVIDFWAPWCGPCRNFAPIFEDV aeers 77 1.00 F 16761507 51, 1, 3 33 slekn IEDDKWTILFFYPMDFTFVCPTEIVAIS arsde 60 1.00 F 16803644 52, 1, 2 19 iissh PKILLNFWAEWCAPCRCFWPTLEQF aemee 43 1.00 F 16804867 53, 1, 3 31 vttdd LFAGKTVAVFSLPGAFTPTCSSTHLPGY nelak 58 1.00 F 17229033 53, 2, 0 73 ngvde IVCISVNDAFVM newak 84 0.32 F 17229033 54, 1, 2 22 vlsed KVVVVDFTATWCGPCRLVSPLMDQL adeyk 46 1.00 F 17229859 55, 1, 2 18 vlegt GYVLVDYFSDGCVPCKALMPAVEEL skkye 42 1.00 F 1729944 56, 1, 2 28 rqhpe KIIILDFYATWCGPCKAIAPLYKEL atthk 52 1.00 F 17531233 57, 1, 2 27 ehlkg KIIGLYFSASWCPPCRAFTPKLKEF feeik 51 1.00 F 17537401 58, 1, 2 63 safrg QPVVINFWAPWCGPCVEEMPELSAL aqeqk 87 1.00 F 17547503 59, 1, 2 286 seykg KTIFLNFWATWCPPCRGEMPYIDEL ykeyn 310 1.00 F 18309723 60, 1, 3 28 rlsev LKRGRPVVLLFFPGAFTSVCTKELCTFR dkmal 55 1.00 F 18313548 60, 2, 0 68 kanae VLAISVDSPFAL kafkd 79 1.00 F 18313548 61, 1, 2 44 dsllg KKIGLYFSAAWCGPCQRFTPQLVEV ynels 68 1.00 F 18406743 61, 2, 2 364 sdlvg KTILMYFSAHWCPPCRAFTPKLVEV ykqik 388 1.00 F 18406743 62, 1, 3 26 eislq DYIGKYVVLAFYPLDFTFVCPTEINRFS dlkga 53 1.00 F 19173077 62, 2, 0 66 rrnav VLLISCDSVYTH kawas 77 1.00 F 19173077 63, 1, 2 15 sdfeg EVVVLNAWGQWCAPCRAEVDDLQLV qetld 39 1.00 F 19554157 64, 1, 2 39 eeykg KVVVINFWATWCGYCVEEMPGFEKV ykefg 63 1.00 F 19705357 66, 1, 2 7 agdfm KPMLLDFSATWCGPCRMQKPILEEL ekkyg 31 1.00 F 20092028 67, 1, 3 27 evtek DTEGRWSVFFFYPADFTFVCPTELGDVA dhyee 54 1.00 F 20151112 67, 2, 0 67 klgvd VYSVSTDTHFTH kawhs 78 1.00 F 20151112 67, 3, 1 154 rkika AQYVAAHPGEVCPAKWKEG eatla 172 1.00 F 20151112 68, 1, 3 29 vdtht LFTGRKVVLFAVPGAFTPTCSAKHLPGY veqfe 56 1.00 F 21112072 69, 1, 2 103 adykg KVVVLNVWGSWCPPCRAEAKNFEKV yqdvk 127 1.00 F 21222859 70, 1, 3 32 qinhk TYEGQWKVVFAWPKDFTFVCPTEIAAFG klnde 59 1.00 F 21223405 70, 2, 0 72 drdaq ILGFSGDSEFVH hawrk 83 1.00 F 21223405 71, 1, 3 28 eihly DLKGKKVLLSFHPLAWTQVCAQQMKSLE enyel 55 1.00 F 21227878 72, 1, 0 78 keegi VLTISADLPFAQ krwca 89 0.99 F 21283385 73, 1, 3 25 mvsls EFKGRKVLLIFYPGDDTPVCTAQLCDYR nnvaa 52 1.00 F 21674812 73, 2, 0 65 srgit VIGISGDSPESH kqfae 76 1.00 F 21674812 74, 1, 2 53 sdfkg ERVLINFWTTWCPPCRQEMPDMQRF yqdlq 77 1.00 F 23098307 76, 1, 2 20 kylqh QRVVVDFSAEWCGPCRAIAPVFDKL sneft 44 1.00 F 267116 77, 1, 2 81 aafkg KVSLVNVWASWCVPCHDEAPLLTEL gkdkr 105 1.00 F 27375582 78, 1, 2 34 vtsdn DVVLADFYADWCGPCQMLEPVVETL aeqtd 58 1.00 F 2822332 79, 1, 2 77 sdlkg KKVILNFWATWCGPCQQEMPDMEAF ykehk 101 1.00 F 30021713 80, 1, 2 19 tisan SNVLVYFWAPLCAPCDLFTPTYEAS srkhf 43 1.00 F 3261501 81, 1, 3 28 irfhd FLGDSWGILFSHPRDFTPVCTTELGRAA klape 55 1.00 F 3318841 81, 2, 0 68 krnvk LIALSIDSVEDH lawsk 79 1.00 F 3318841 81, 3, 1 166 lrvvi SLQLTAEKRVATPVDWKDG dsvmv 184 1.00 F 3318841 82, 1, 2 19 tietn PLVIVDFWAPWCGSCKMLGPVLEEV esevg 43 1.00 F 3323237 83, 1, 2 17 ektah QAVVVNVGASWCPDCRKIEPIMENL aktyk 41 1.00 F 4155972 84, 1, 2 79 vvnse TPVVVDFHAQWCGPCKILGPRLEKM vakqh 103 1.00 F 4200327 85, 1, 3 10 eidin EYKGKYVVLLFYPLDWTFVCPTEMIGYS evagq 37 1.00 F 4433065 85, 2, 0 50 eince VIGVSVDSVYCH qawce 61 1.00 F 4433065 86, 1, 3 32 vsvhs IAAGKKVILFGVPGAFTPTCSMSHVPGF igkae 59 1.00 F 4704732 86, 2, 0 74 kgide IICFSVNDPFVM kawgk 85 0.43 F 4704732 87, 1, 3 28 fdfyk YVGDNWAILFSHPHDFTPVCTTELAEFG kmhee 55 1.00 F 4996210 87, 2, 0 68 klnck LIGFSCNSKESH dqwie 79 0.56 F 4996210 87, 3, 1 163 lrvlk SLQLTNTHPVATPVNWKEG dkcci 181 1.00 F 4996210 88, 1, 3 41 ynask EFANKKVVLFALPGAFTPVCSANHVPEY iqklp 68 1.00 F 5326864 89, 1, 3 88 slkki TENNRVVVFFVYPRASTPGCTRQACGFR dnyqe 115 1.00 F 6322180 90, 1, 3 43 ewskl ISENKKVIITGAPAAFSPTCTVSHIPGY inyld 70 0.99 F 6323138 91, 1, 2 20 nenkg RLIVVDFFAQWCGPCRNIAPKVEAL akeip 44 1.00 F 6687568 92, 1, 0 68 klgve VLSVSVDSVFVH kmwnd 79 1.00 F 6850955 93, 1, 2 18 llttn KKVVVDFYANWCGPCKILGPIFEEV aqdkk 42 1.00 F 7109697 94, 1, 2 21 ilaed KLVVIDFYADWCGPCKIIAPKLDEL aqqys 45 1.00 F 7290567 95, 1, 3 31 evkls DYKGKYVVLFFYPLDFTFVCPTEIIAFS nraed 58 1.00 F 9955016 95, 2, 0 71 klgce VLGVSVDSQFTH lawin 82 1.00 F 9955016 95, 3, 1 160 lrlvq AFQYTDEHGEVCPAGWKPG sdtik 178 1.00 F 9955016 96, 1, 2 49 adlqg KVTLINFWFPSCPGCVSEMPKIIKT andyk 73 1.00 F 15677788 124 motifs Column 1 : Sequence Number, Site Number Column 2 : Motif type Column 3 : Left End Location Column 4 : Motif Element Column 5 : Right End Location Column 6 : Probability of Element Column 7 : Forward Motif (F) or Reverse Complement (R) Column 8 : Sequence Description from Fast A input ------------------------------------------------------------------------- MOTIF a Motif model (residue frequency x 100) ____________________________________________ Pos. # a v c d e f g h i w k l m n y p q r s t Info _____________________________________________________________________________________________ 1 | . 68 . . . . . . 20 . . 10 . . . . . . . . 2.4 2 | . 17 . . . . . . 34 3 . 34 . . 6 . . . . 3 1.7 3 | 13 6 10 . . . 51 . . . . 3 . . . . . . 10 3 1.9 4 | . 31 . . . 10 . . 48 . . 10 . . . . . . . . 2.1 5 | . . . . . . . . . . . . . 3 . . . . 96 . 3.8 7 | . . . 86 . . . . . . . . . 13 . . . . . . 3.2 8 | . . . 10 . . . . . . 3 10 . . . 6 3 . 58 6 2.0 9 | 3 34 . . 6 . . 6 . . 3 . . . . 37 3 . . 3 1.8 10 | . . . . 24 58 . . . . . . . . 17 . . . . . 2.9 12 | . . . . . . . 55 . . . 13 6 6 . . 17 . . . 3.4 nonsite 8 8 . 6 7 4 7 1 6 . 7 9 2 4 2 4 3 4 5 5 site 1 15 1 9 3 6 5 6 10 . . 8 . 2 2 4 2 . 16 1 Motif probability model ____________________________________________ Pos. # a v c d e f g h i w k l m n y p q r s t ____________________________________________ 1 | 0.001 0.679 0.000 0.001 0.001 0.001 0.001 0.000 0.204 0.000 0.001 0.103 0.000 0.001 0.000 0.001 0.001 0.001 0.001 0.001 2 | 0.001 0.171 0.000 0.001 0.001 0.001 0.001 0.000 0.340 0.034 0.001 0.341 0.000 0.001 0.068 0.001 0.001 0.001 0.001 0.035 3 | 0.137 0.069 0.102 0.001 0.001 0.001 0.510 0.000 0.001 0.000 0.001 0.035 0.000 0.001 0.000 0.001 0.001 0.001 0.103 0.035 4 | 0.001 0.306 0.000 0.001 0.001 0.103 0.001 0.000 0.476 0.000 0.001 0.103 0.000 0.001 0.000 0.001 0.001 0.001 0.001 0.001 5 | 0.001 0.001 0.000 0.001 0.001 0.001 0.001 0.000 0.001 0.000 0.001 0.002 0.000 0.035 0.000 0.001 0.001 0.001 0.950 0.001 7 | 0.001 0.001 0.000 0.849 0.001 0.001 0.001 0.000 0.001 0.000 0.001 0.002 0.000 0.136 0.000 0.001 0.001 0.001 0.001 0.001 8 | 0.001 0.001 0.000 0.103 0.001 0.001 0.001 0.000 0.001 0.000 0.035 0.103 0.000 0.001 0.000 0.069 0.034 0.001 0.577 0.069 9 | 0.035 0.340 0.000 0.001 0.069 0.001 0.001 0.068 0.001 0.000 0.035 0.002 0.000 0.001 0.000 0.374 0.034 0.001 0.001 0.035 10 | 0.001 0.001 0.000 0.001 0.238 0.577 0.001 0.000 0.001 0.000 0.001 0.002 0.000 0.001 0.170 0.001 0.001 0.001 0.001 0.001 12 | 0.001 0.001 0.000 0.001 0.001 0.001 0.001 0.543 0.001 0.000 0.001 0.137 0.068 0.068 0.000 0.001 0.170 0.001 0.001 0.001 Background probability model 0.089 0.079 0.008 0.067 0.076 0.044 0.071 0.013 0.061 0.009 0.076 0.094 0.023 0.043 0.027 0.045 0.034 0.044 0.052 0.052 10 columns Num Motifs: 29 1, 1 79 agvda VIVLSANDPFVQ safgk 90 0.48 F 1091044 2, 1 72 klstq ILAISVDSPFSH lqyll 83 1.00 F 11467494 6, 1 66 nlntk IYAISNDSHFVQ knwie 77 1.00 F 13186328 8, 1 68 kknte VISVSEDTVYVH kawvq 79 1.00 F 13541053 9, 1 66 kfkak VIGISVDSPFSL aefak 77 1.00 F 13541117 13, 1 65 eldce LVGLSVDQVFSH ikwie 76 0.98 F 14286173 15, 1 65 klgav VIGVSTDSVEKN rkfae 76 1.00 F 14600438 21, 1 80 megvd VTVVSMDLPFAQ krfce 91 0.65 F 15605963 23, 1 70 tagln VVGISPDKPEKL atfrd 81 0.99 F 15609658 24, 1 64 glntv ILGVSPDPVERH kkfie 75 1.00 F 15613511 28, 1 56 fekaq VVGISRDSVEAL krfke 67 1.00 F 15643152 30, 1 101 tpgla VWGISPDSTYAH eafad 112 0.98 F 15790738 32, 1 80 idntv VLCISADLPFAQ srfcg 91 0.99 F 15801846 35, 1 66 eagav VLGINRDSVYAH rawaa 77 1.00 F 15807234 38, 1 66 evnav VIGISVDPPFSN kafke 77 1.00 F 15899339 47, 1 71 krgve VVGVSFDSEFVH nawrn 82 1.00 F 16501671 53, 1 73 ngvde IVCISVNDAFVM newak 84 0.32 F 17229033 60, 1 68 kanae VLAISVDSPFAL kafkd 79 1.00 F 18313548 62, 1 66 rrnav VLLISCDSVYTH kawas 77 1.00 F 19173077 67, 1 67 klgvd VYSVSTDTHFTH kawhs 78 1.00 F 20151112 70, 1 72 drdaq ILGFSGDSEFVH hawrk 83 1.00 F 21223405 72, 1 78 keegi VLTISADLPFAQ krwca 89 0.99 F 21283385 73, 1 65 srgit VIGISGDSPESH kqfae 76 1.00 F 21674812 81, 1 68 krnvk LIALSIDSVEDH lawsk 79 1.00 F 3318841 85, 1 50 eince VIGVSVDSVYCH qawce 61 1.00 F 4433065 86, 1 74 kgide IICFSVNDPFVM kawgk 85 0.43 F 4704732 87, 1 68 klnck LIGFSCNSKESH dqwie 79 0.56 F 4996210 92, 1 68 klgve VLSVSVDSVFVH kmwnd 79 1.00 F 6850955 95, 1 71 klgce VLGVSVDSQFTH lawin 82 1.00 F 9955016 ***** **** * Column 1 : Sequence Number, Site Number Column 2 : Left End Location Column 4 : Motif Element Column 5 : Right End Location Column 6 : Probability of Element Column 7 : Forward Motif (F) or Reverse Complement (R) Column 8 : Sequence Description from Fast A input Log Motif portion of MAP for motif a = -469.15170 Log Fragmentation portion of MAP for motif a = -3.80666 ------------------------------------------------------------------------- MOTIF b Motif model (residue frequency x 100) ____________________________________________ Pos. # a v c d e f g h i w k l m n y p q r s t Info _____________________________________________________________________________________________ 1 | 50 . . . . . . . 16 . . . . . . . . . 33 . 1.9 2 | . . . . . 16 . . . . . 50 . . . . 33 . . . 2.1 3 | . . . . . . . . . . . . . . 33 . 66 . . . 3.4 4 | . 33 . . . 16 . . . . . 33 . . 16 . . . . . 1.7 6 | 33 . . 16 33 . . . . . . . . 16 . . . . . . 1.5 8 | . . . . . . . 50 . . 16 . . . . 33 . . . . 3.2 9 | . . . . . . 66 . . . . . . . . 16 . 16 . . 2.3 10 | . 33 . 16 33 . . . . . . . . . 16 . . . . . 1.7 11 | 50 50 . . . . . . . . . . . . . . . . . . 2.1 12 | . . 66 . . . . . . . . . . . . . . . . 33 4.4 13 | . . . . . . . . . . . . . . . 100 . . . . 3.8 14 | 50 50 . . . . . . . . . . . . . . . . . . 2.1 16 | . . . . . . . . . 100 . . . . . . . . . . 5.8 17 | . . . . 16 . . . . . 66 . . 16 . . . . . . 2.1 19 | . . . . . . 100 . . . . . . . . . . . . . 3.2 nonsite 8 7 . 6 7 4 7 1 6 . 7 9 2 4 2 4 3 4 5 5 site 12 11 4 2 5 2 11 3 1 6 5 5 . 2 4 10 6 1 2 2 Motif probability model ____________________________________________ Pos. # a v c d e f g h i w k l m n y p q r s t ____________________________________________ 1 | 0.468 0.006 0.001 0.005 0.005 0.004 0.005 0.001 0.158 0.001 0.006 0.007 0.002 0.003 0.002 0.004 0.002 0.003 0.312 0.004 2 | 0.006 0.006 0.001 0.005 0.005 0.158 0.005 0.001 0.004 0.001 0.006 0.469 0.002 0.003 0.002 0.004 0.310 0.003 0.004 0.004 3 | 0.006 0.006 0.001 0.005 0.005 0.004 0.005 0.001 0.004 0.001 0.006 0.007 0.002 0.003 0.310 0.004 0.618 0.003 0.004 0.004 4 | 0.006 0.314 0.001 0.005 0.005 0.158 0.005 0.001 0.004 0.001 0.006 0.315 0.002 0.003 0.156 0.004 0.002 0.003 0.004 0.004 6 | 0.314 0.006 0.001 0.159 0.313 0.004 0.005 0.001 0.004 0.001 0.006 0.007 0.002 0.157 0.002 0.004 0.002 0.003 0.004 0.004 8 | 0.006 0.006 0.001 0.005 0.005 0.004 0.005 0.463 0.004 0.001 0.159 0.007 0.002 0.003 0.002 0.312 0.002 0.003 0.004 0.004 9 | 0.006 0.006 0.001 0.005 0.005 0.004 0.621 0.001 0.004 0.001 0.006 0.007 0.002 0.003 0.002 0.158 0.002 0.157 0.004 0.004 10 | 0.006 0.314 0.001 0.159 0.313 0.004 0.005 0.001 0.004 0.001 0.006 0.007 0.002 0.003 0.156 0.004 0.002 0.003 0.004 0.004 11 | 0.468 0.468 0.001 0.005 0.005 0.004 0.005 0.001 0.004 0.001 0.006 0.007 0.002 0.003 0.002 0.004 0.002 0.003 0.004 0.004 12 | 0.006 0.006 0.617 0.005 0.005 0.004 0.005 0.001 0.004 0.001 0.006 0.007 0.002 0.003 0.002 0.004 0.002 0.003 0.004 0.312 13 | 0.006 0.006 0.001 0.005 0.005 0.004 0.005 0.001 0.004 0.001 0.006 0.007 0.002 0.003 0.002 0.927 0.002 0.003 0.004 0.004 14 | 0.468 0.468 0.001 0.005 0.005 0.004 0.005 0.001 0.004 0.001 0.006 0.007 0.002 0.003 0.002 0.004 0.002 0.003 0.004 0.004 16 | 0.006 0.006 0.001 0.005 0.005 0.004 0.005 0.001 0.004 0.924 0.006 0.007 0.002 0.003 0.002 0.004 0.002 0.003 0.004 0.004 17 | 0.006 0.006 0.001 0.005 0.159 0.004 0.005 0.001 0.004 0.001 0.621 0.007 0.002 0.157 0.002 0.004 0.002 0.003 0.004 0.004 19 | 0.006 0.006 0.001 0.005 0.005 0.004 0.928 0.001 0.004 0.001 0.006 0.007 0.002 0.003 0.002 0.004 0.002 0.003 0.004 0.004 Background probability model 0.089 0.079 0.008 0.067 0.076 0.044 0.071 0.013 0.061 0.009 0.076 0.094 0.023 0.043 0.027 0.045 0.034 0.044 0.052 0.052 15 columns Num Motifs: 6 2, 1 161 riles IQYVKENPGYACPVNWNFG dqvfy 179 1.00 F 11467494 47, 1 160 lrmvd ALQFHEEHGDVCPAQWEKG kegmn 178 1.00 F 16501671 67, 1 154 rkika AQYVAAHPGEVCPAKWKEG eatla 172 1.00 F 20151112 81, 1 166 lrvvi SLQLTAEKRVATPVDWKDG dsvmv 184 1.00 F 3318841 87, 1 163 lrvlk SLQLTNTHPVATPVNWKEG dkcci 181 1.00 F 4996210 95, 1 160 lrlvq AFQYTDEHGEVCPAGWKPG sdtik 178 1.00 F 9955016 **** * ******* ** * Column 1 : Sequence Number, Site Number Column 2 : Left End Location Column 4 : Motif Element Column 5 : Right End Location Column 6 : Probability of Element Column 7 : Forward Motif (F) or Reverse Complement (R) Column 8 : Sequence Description from Fast A input Log Motif portion of MAP for motif b = -187.76179 Log Fragmentation portion of MAP for motif b = -7.77486 ------------------------------------------------------------------------- MOTIF c Motif model (residue frequency x 100) ____________________________________________ Pos. # a v c d e f g h i w k l m n y p q r s t Info _____________________________________________________________________________________________ 1 | . . . 5 3 . 5 . . . 53 3 . . . 3 11 7 1 3 1.6 3 | . 61 . . . . . . 22 . . 7 3 . . . . . 1 3 2.1 4 | . 38 . . . 3 3 . 11 . . 40 1 . . . . . . . 1.7 5 | 5 35 . . . . . . 24 . 1 31 1 . . . . . . . 1.7 6 | . . . 48 . . . 1 . . . . . 37 11 . 1 . . . 2.7 7 | 1 7 . . . 85 . . . . . 3 . . 1 . . . . . 3.4 8 | . . . . . 5 3 1 . 55 . . . . 18 . . . 9 5 3.5 9 | 87 . . . . 1 5 . . . . . . . . . . . 3 1 2.8 10 | 3 . . 14 9 . . 1 . . . . . 1 . 16 5 . 20 25 1.5 11 | . . . . . . 1 . . 90 . 1 . . 1 . . . 1 1 5.2 12 | . . 100 . . . . . . . . . . . . . . . . . 6.0 13 | 9 7 . . 1 . 53 . . . 1 . 1 . . 24 . . . . 2.0 14 | . 7 . 1 . . 1 . . . . 1 . . 1 83 . . 1 . 3.2 15 | . . 100 . . . . . . . . . . . . . . . . . 6.0 16 | . 5 . 1 1 . . 3 1 . 27 1 . . . . 9 46 . . 2.1 18 | . 3 . . 37 12 . . 18 . . 16 3 . . . 3 . . 3 1.4 20 | . . . 1 . . . . . . 3 . . . . 94 . . . . 3.9 22 | . 7 . . . 22 . . 9 . . 44 11 . 5 . . . . . 1.8 24 | 7 . . 3 37 . . 3 . . 27 1 . 1 . . 11 1 1 1 1.4 25 | 3 18 . 1 . 9 . . 7 . . 51 1 . . . . . 1 3 1.4 nonsite 8 7 1 6 7 4 6 1 5 1 7 9 2 4 2 4 3 4 4 4 site 5 9 10 3 4 7 3 . 4 7 5 10 1 2 2 11 2 2 2 2 Motif probability model ____________________________________________ Pos. # a v c d e f g h i w k l m n y p q r s t ____________________________________________ 1 | 0.001 0.001 0.000 0.056 0.037 0.000 0.056 0.000 0.001 0.000 0.533 0.038 0.000 0.000 0.000 0.037 0.110 0.074 0.019 0.037 3 | 0.001 0.606 0.000 0.001 0.001 0.000 0.001 0.000 0.221 0.000 0.001 0.074 0.037 0.000 0.000 0.000 0.000 0.000 0.019 0.037 4 | 0.001 0.386 0.000 0.001 0.001 0.037 0.037 0.000 0.111 0.000 0.001 0.405 0.019 0.000 0.000 0.000 0.000 0.000 0.000 0.000 5 | 0.056 0.349 0.000 0.001 0.001 0.000 0.001 0.000 0.239 0.000 0.019 0.313 0.019 0.000 0.000 0.000 0.000 0.000 0.000 0.000 6 | 0.001 0.001 0.000 0.478 0.001 0.000 0.001 0.018 0.001 0.000 0.001 0.001 0.000 0.367 0.110 0.000 0.019 0.000 0.000 0.000 7 | 0.019 0.074 0.000 0.001 0.001 0.845 0.001 0.000 0.001 0.000 0.001 0.038 0.000 0.000 0.019 0.000 0.000 0.000 0.000 0.000 8 | 0.001 0.001 0.000 0.001 0.001 0.056 0.037 0.018 0.001 0.551 0.001 0.001 0.000 0.000 0.184 0.000 0.000 0.000 0.092 0.056 9 | 0.863 0.001 0.000 0.001 0.001 0.019 0.056 0.000 0.001 0.000 0.001 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.037 0.019 10 | 0.037 0.001 0.000 0.147 0.092 0.000 0.001 0.018 0.001 0.000 0.001 0.001 0.000 0.019 0.000 0.166 0.055 0.000 0.202 0.257 11 | 0.001 0.001 0.000 0.001 0.001 0.000 0.019 0.000 0.001 0.899 0.001 0.019 0.000 0.000 0.019 0.000 0.000 0.000 0.019 0.019 12 | 0.001 0.001 0.991 0.001 0.001 0.000 0.001 0.000 0.001 0.000 0.001 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 13 | 0.093 0.074 0.000 0.001 0.019 0.000 0.533 0.000 0.001 0.000 0.019 0.001 0.019 0.000 0.000 0.239 0.000 0.000 0.000 0.000 14 | 0.001 0.074 0.000 0.019 0.001 0.000 0.019 0.000 0.001 0.000 0.001 0.019 0.000 0.000 0.019 0.826 0.000 0.000 0.019 0.000 15 | 0.001 0.001 0.991 0.001 0.001 0.000 0.001 0.000 0.001 0.000 0.001 0.001 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 16 | 0.001 0.056 0.000 0.019 0.019 0.000 0.001 0.037 0.019 0.000 0.276 0.019 0.000 0.000 0.000 0.000 0.092 0.459 0.000 0.000 18 | 0.001 0.037 0.000 0.001 0.368 0.129 0.001 0.000 0.184 0.000 0.001 0.166 0.037 0.000 0.000 0.000 0.037 0.000 0.000 0.037 20 | 0.001 0.001 0.000 0.019 0.001 0.000 0.001 0.000 0.001 0.000 0.037 0.001 0.000 0.000 0.000 0.936 0.000 0.000 0.000 0.000 22 | 0.001 0.074 0.000 0.001 0.001 0.221 0.001 0.000 0.092 0.000 0.001 0.441 0.110 0.000 0.055 0.000 0.000 0.000 0.000 0.000 24 | 0.074 0.001 0.000 0.037 0.368 0.000 0.001 0.037 0.001 0.000 0.276 0.019 0.000 0.019 0.000 0.000 0.110 0.019 0.019 0.019 25 | 0.037 0.184 0.000 0.019 0.001 0.092 0.001 0.000 0.074 0.000 0.001 0.515 0.019 0.000 0.000 0.000 0.000 0.000 0.019 0.037 Background probability model 0.089 0.079 0.008 0.067 0.076 0.044 0.071 0.013 0.061 0.009 0.076 0.094 0.023 0.043 0.027 0.045 0.034 0.044 0.052 0.052 20 columns Num Motifs: 54 3, 1 17 viqsd KLVVVDFYADWCMPCRYISPILEKL skeyn 41 1.00 F 11499727 4, 1 22 llntt QYVVADFYADWCGPCKAIAPMYAQF aktfs 46 1.00 F 1174686 5, 1 19 ifsak KNVIVDFWAAWCGPCKLTSPEFQKA adefs 43 1.00 F 12044976 7, 1 21 kenhs KPILIDFYADWCPPCRMLIPVLDSI ekkhg 45 1.00 F 13358154 10, 1 17 aetse GVVLADFWAPWCGPCKMIAPVLEEL dqemg 41 1.00 F 135765 11, 1 29 akesn KLIVIDFTASWCPPCRMIAPIFNDL akkfm 53 1.00 F 1388082 12, 1 44 likqn DKLVIDFYATWCGPCKMMQPHLTKL iqayp 68 1.00 F 140543 14, 1 80 selrg KVVMLQFTASWCGVCRKEMPFIEKD iwlkh 104 1.00 F 14578634 16, 1 23 lqnsd KPVLVDFYATWCGPCQLMVPILNEV setlk 47 1.00 F 15218394 17, 1 157 adfrg RPLVINLWASWCPPCRREMPVLQQA qaenp 181 1.00 F 15597673 18, 1 26 ensfh KPVLVDFWADWCAPCKALMPLLAQI aesyq 50 1.00 F 15599256 19, 1 67 negkg KTILLNFWSETCGVCIAELKTFEQL lqsyp 91 1.00 F 15602312 20, 1 61 eefkg KVLLINFWATWCPPCKEEIPMFKEI yekyr 85 1.00 F 15605725 25, 1 60 sdyrg DVVILNVWASWCEPCRKEMPALMEL qsdye 84 1.00 F 15614085 26, 1 63 releg KGVFLNFWGTYCPPCEREMPHMEKL ygeyk 87 1.00 F 15614140 27, 1 72 sslrg QPVILHFFATWCPVCQDEMPSLVKL dkeyr 96 1.00 F 15615431 31, 1 2 m TVTLKDFYADWCGPCKTQDPILEEL eadyd 26 1.00 F 15791337 33, 1 72 adyrg RPVVLNFWASWCGPCREEAPLFAKL aahpg 96 1.00 F 15805225 34, 1 78 taaqg KPVVINFWASWCVPCRQEAPLFSKL sqeta 102 1.00 F 15805374 37, 1 49 fitkn KIVVVDFWAEWCAPCLILAPVIEEL andyp 73 1.00 F 15899007 40, 1 61 easrq QPVLVDFWAPWCGPCKQLTPVIEKV vreaa 85 1.00 F 15966937 41, 1 61 sdfrg KTLLVNLWATWCVPCRKEMPALDEL qgkls 85 1.00 F 15988313 42, 1 60 qdakg KKVLLNFWATWCKPCRQEMPAMEKL qkeya 84 1.00 F 16078864 43, 1 53 llqdd LPMVIDFWAPWCGPCRSFAPIFAET aaera 77 1.00 F 16123427 46, 1 21 vlkad GAILVDFWAEWCGPCKMIAPILDEI adeyq 45 1.00 F 1633495 48, 1 34 vlqcp KPILVYFGAPWCGLCHFVKPLLNHL hgewq 58 1.00 F 1651717 49, 1 60 tlsee RPVLLYFWASWCGVCRFTTPAVAHL aaege 84 1.00 F 16759994 50, 1 53 llkdd LPVVIDFWAPWCGPCRNFAPIFEDV aeers 77 1.00 F 16761507 52, 1 19 iissh PKILLNFWAEWCAPCRCFWPTLEQF aemee 43 1.00 F 16804867 54, 1 22 vlsed KVVVVDFTATWCGPCRLVSPLMDQL adeyk 46 1.00 F 17229859 55, 1 18 vlegt GYVLVDYFSDGCVPCKALMPAVEEL skkye 42 1.00 F 1729944 56, 1 28 rqhpe KIIILDFYATWCGPCKAIAPLYKEL atthk 52 1.00 F 17531233 57, 1 27 ehlkg KIIGLYFSASWCPPCRAFTPKLKEF feeik 51 1.00 F 17537401 58, 1 63 safrg QPVVINFWAPWCGPCVEEMPELSAL aqeqk 87 1.00 F 17547503 59, 1 286 seykg KTIFLNFWATWCPPCRGEMPYIDEL ykeyn 310 1.00 F 18309723 61, 1 44 dsllg KKIGLYFSAAWCGPCQRFTPQLVEV ynels 68 1.00 F 18406743 61, 2 364 sdlvg KTILMYFSAHWCPPCRAFTPKLVEV ykqik 388 1.00 F 18406743 63, 1 15 sdfeg EVVVLNAWGQWCAPCRAEVDDLQLV qetld 39 1.00 F 19554157 64, 1 39 eeykg KVVVINFWATWCGYCVEEMPGFEKV ykefg 63 1.00 F 19705357 66, 1 7 agdfm KPMLLDFSATWCGPCRMQKPILEEL ekkyg 31 1.00 F 20092028 69, 1 103 adykg KVVVLNVWGSWCPPCRAEAKNFEKV yqdvk 127 1.00 F 21222859 74, 1 53 sdfkg ERVLINFWTTWCPPCRQEMPDMQRF yqdlq 77 1.00 F 23098307 76, 1 20 kylqh QRVVVDFSAEWCGPCRAIAPVFDKL sneft 44 1.00 F 267116 77, 1 81 aafkg KVSLVNVWASWCVPCHDEAPLLTEL gkdkr 105 1.00 F 27375582 78, 1 34 vtsdn DVVLADFYADWCGPCQMLEPVVETL aeqtd 58 1.00 F 2822332 79, 1 77 sdlkg KKVILNFWATWCGPCQQEMPDMEAF ykehk 101 1.00 F 30021713 80, 1 19 tisan SNVLVYFWAPLCAPCDLFTPTYEAS srkhf 43 1.00 F 3261501 82, 1 19 tietn PLVIVDFWAPWCGSCKMLGPVLEEV esevg 43 1.00 F 3323237 83, 1 17 ektah QAVVVNVGASWCPDCRKIEPIMENL aktyk 41 1.00 F 4155972 84, 1 79 vvnse TPVVVDFHAQWCGPCKILGPRLEKM vakqh 103 1.00 F 4200327 91, 1 20 nenkg RLIVVDFFAQWCGPCRNIAPKVEAL akeip 44 1.00 F 6687568 93, 1 18 llttn KKVVVDFYANWCGPCKILGPIFEEV aqdkk 42 1.00 F 7109697 94, 1 21 ilaed KLVVIDFYADWCGPCKIIAPKLDEL aqqys 45 1.00 F 7290567 96, 1 49 adlqg KVTLINFWFPSCPGCVSEMPKIIKT andyk 73 1.00 F 15677788 * ************** * * * ** Column 1 : Sequence Number, Site Number Column 2 : Left End Location Column 4 : Motif Element Column 5 : Right End Location Column 6 : Probability of Element Column 7 : Forward Motif (F) or Reverse Complement (R) Column 8 : Sequence Description from Fast A input Log Motif portion of MAP for motif c = -1607.59351 Log Fragmentation portion of MAP for motif c = -10.42374 ------------------------------------------------------------------------- MOTIF d Motif model (residue frequency x 100) ____________________________________________ Pos. # a v c d e f g h i w k l m n y p q r s t Info _____________________________________________________________________________________________ 1 | 2 . . 28 17 2 . 2 8 . . 17 . . 11 . . . 2 5 1.1 2 | 5 2 . . 5 34 . . . . 2 14 . . 17 . . 8 2 5 1.4 3 | 8 . . 5 11 . 14 . 2 . 28 . . 5 2 . . 17 . 2 1.0 4 | 2 . . 11 . . 62 . . . 5 . . 11 . . 2 . 2 . 2.1 5 | . . . . . . 2 . . . 57 . . 5 . . 5 22 5 . 2.2 7 | 2 68 . . . 2 5 . 2 . 2 . . 2 . . . . 2 8 1.9 8 | 2 62 . . . . . . 25 . . 8 . . . . . . . . 2.3 9 | . 8 . . . 8 . . 5 . . 77 . . . . . . . . 2.3 10 | 8 8 . . . 57 . . 2 . . 5 . . 11 . . . 2 2 2.1 11 | 14 2 . . . 62 8 . . . . . . . . . . . 11 . 2.4 12 | 2 11 . . . 14 . 11 2 5 . 5 . . 45 . . . . . 2.4 13 | . . . . . . . . . . . . . . . 100 . . . . 4.3 14 | 22 . . . . 2 28 2 . . 8 17 5 . 2 . . 8 . . 1.2 15 | 51 . . 42 . . . . . . . . . 2 . . . . 2 . 2.3 16 | . . . 2 . 71 2 . . 5 . . 5 . 5 . . . 5 . 2.9 17 | . . . . . . . . . . . . . . . . . . 11 88 3.6 18 | 5 . . . . 25 2 . . . . . . . . 51 2 . 11 . 2.4 19 | . 54 . . . . 20 . 8 . . . . . . . . . . 17 2.0 20 | . . 97 . . . . . . . . . . . . . . . 2 . 6.2 21 | 5 . . . . . . . . . . . . . . 28 2 . 20 42 2.3 22 | 14 2 . . . . 2 . . . 14 5 5 . . . 2 8 5 37 1.3 23 | . . . . 62 . . . . . 2 . . 8 . . 14 . 5 5 2.2 24 | 14 2 . . . 2 2 22 11 . . 31 11 . . . . . . . 1.8 27 | 2 2 . . 2 45 17 . 8 . . 8 . . 8 2 . . . . 1.6 28 | 11 . . 2 2 8 5 . . . . . . 2 14 . 5 22 22 . 1.4 nonsite 8 7 . 6 7 4 7 1 5 . 7 9 2 4 2 4 3 4 5 5 site 7 9 3 3 4 13 7 1 3 . 4 7 1 1 4 7 1 3 4 8 Motif probability model ____________________________________________ Pos. # a v c d e f g h i w k l m n y p q r s t ____________________________________________ 1 | 0.029 0.001 0.000 0.283 0.170 0.029 0.001 0.028 0.085 0.000 0.001 0.170 0.000 0.001 0.113 0.001 0.000 0.001 0.029 0.057 2 | 0.058 0.029 0.000 0.001 0.057 0.339 0.001 0.000 0.001 0.000 0.029 0.142 0.000 0.001 0.169 0.001 0.000 0.085 0.029 0.057 3 | 0.086 0.001 0.000 0.057 0.114 0.001 0.142 0.000 0.029 0.000 0.283 0.001 0.000 0.057 0.029 0.001 0.000 0.170 0.001 0.029 4 | 0.029 0.001 0.000 0.114 0.001 0.001 0.621 0.000 0.001 0.000 0.057 0.001 0.000 0.113 0.000 0.001 0.029 0.001 0.029 0.001 5 | 0.001 0.001 0.000 0.001 0.001 0.001 0.029 0.000 0.001 0.000 0.564 0.001 0.000 0.057 0.000 0.001 0.057 0.226 0.057 0.001 7 | 0.029 0.677 0.000 0.001 0.001 0.029 0.057 0.000 0.029 0.000 0.029 0.001 0.000 0.029 0.000 0.001 0.000 0.001 0.029 0.085 8 | 0.029 0.621 0.000 0.001 0.001 0.001 0.001 0.000 0.254 0.000 0.001 0.086 0.000 0.001 0.000 0.001 0.000 0.001 0.001 0.001 9 | 0.001 0.086 0.000 0.001 0.001 0.085 0.001 0.000 0.057 0.000 0.001 0.762 0.000 0.001 0.000 0.001 0.000 0.001 0.001 0.001 10 | 0.086 0.086 0.000 0.001 0.001 0.564 0.001 0.000 0.029 0.000 0.001 0.058 0.000 0.001 0.113 0.001 0.000 0.001 0.029 0.029 11 | 0.142 0.029 0.000 0.001 0.001 0.620 0.085 0.000 0.001 0.000 0.001 0.001 0.000 0.001 0.000 0.001 0.000 0.001 0.113 0.001 12 | 0.029 0.114 0.000 0.001 0.001 0.142 0.001 0.113 0.029 0.057 0.001 0.058 0.000 0.001 0.451 0.001 0.000 0.001 0.001 0.001 13 | 0.001 0.001 0.000 0.001 0.001 0.001 0.001 0.000 0.001 0.000 0.001 0.001 0.000 0.001 0.000 0.987 0.000 0.001 0.001 0.001 14 | 0.227 0.001 0.000 0.001 0.001 0.029 0.283 0.028 0.001 0.000 0.086 0.170 0.057 0.001 0.029 0.001 0.000 0.085 0.001 0.001 15 | 0.508 0.001 0.000 0.423 0.001 0.001 0.001 0.000 0.001 0.000 0.001 0.001 0.000 0.029 0.000 0.001 0.000 0.001 0.029 0.001 16 | 0.001 0.001 0.000 0.029 0.001 0.705 0.029 0.000 0.001 0.057 0.001 0.001 0.057 0.001 0.057 0.001 0.000 0.001 0.057 0.001 17 | 0.001 0.001 0.000 0.001 0.001 0.001 0.001 0.000 0.001 0.000 0.001 0.001 0.000 0.001 0.000 0.001 0.000 0.001 0.113 0.874 18 | 0.058 0.001 0.000 0.001 0.001 0.254 0.029 0.000 0.001 0.000 0.001 0.001 0.000 0.001 0.000 0.508 0.029 0.001 0.113 0.001 19 | 0.001 0.536 0.000 0.001 0.001 0.001 0.198 0.000 0.085 0.000 0.001 0.001 0.000 0.001 0.000 0.001 0.000 0.001 0.001 0.170 20 | 0.001 0.001 0.958 0.001 0.001 0.001 0.001 0.000 0.001 0.000 0.001 0.001 0.000 0.001 0.000 0.001 0.000 0.001 0.029 0.001 21 | 0.058 0.001 0.000 0.001 0.001 0.001 0.001 0.000 0.001 0.000 0.001 0.001 0.000 0.001 0.000 0.282 0.029 0.001 0.198 0.423 22 | 0.142 0.029 0.000 0.001 0.001 0.001 0.029 0.000 0.001 0.000 0.142 0.058 0.057 0.001 0.000 0.001 0.029 0.085 0.057 0.367 23 | 0.001 0.001 0.000 0.001 0.621 0.001 0.001 0.000 0.001 0.000 0.029 0.001 0.000 0.085 0.000 0.001 0.141 0.001 0.057 0.057 24 | 0.142 0.029 0.000 0.001 0.001 0.029 0.029 0.226 0.113 0.000 0.001 0.311 0.113 0.001 0.000 0.001 0.000 0.001 0.001 0.001 27 | 0.029 0.029 0.000 0.001 0.029 0.451 0.170 0.000 0.085 0.000 0.001 0.086 0.000 0.001 0.085 0.029 0.000 0.001 0.001 0.001 28 | 0.114 0.001 0.000 0.029 0.029 0.085 0.057 0.000 0.001 0.000 0.001 0.001 0.000 0.029 0.141 0.001 0.057 0.226 0.226 0.001 Background probability model 0.089 0.079 0.008 0.067 0.076 0.044 0.071 0.013 0.061 0.009 0.076 0.094 0.023 0.043 0.027 0.045 0.034 0.044 0.052 0.052 25 columns Num Motifs: 35 1, 1 37 ldfdk EFRDKTVVIVAIPGAFTPTCTANHIPPF vekft 64 1.00 F 1091044 2, 1 32 irlsd YRGKKYVILFFYPANFTAISPTELMLLS drise 59 1.00 F 11467494 6, 1 26 eikei DLKSNWNVFFFYPYSYSFICPLELKNIS nkike 53 0.98 F 13186328 8, 1 28 kirls SYRGKWVVLFFYPADFTFVCPTEVEGFA edyek 55 1.00 F 13541053 9, 1 26 mrkls EFRGQNVVLAFFPGAFTSVCTKEMCTFR dsman 53 1.00 F 13541117 13, 1 25 melpd EFEGKWFILFSHPADFTPVCTTEFVAFQ evype 52 1.00 F 14286173 15, 1 25 kirls DFRGRIVVLYFYPRAMTPGCTREGVRFN ellde 52 1.00 F 14600438 22, 1 26 vtlrg YRGAKNVLLVFFPLAFTGICQGELDQLR dhlpe 53 1.00 F 15609375 23, 1 30 nvsla DYRGRRVIVYFYPAASTPGCTKQACDFR dnlgd 57 1.00 F 15609658 24, 1 24 tvsls DFKGKNIVLYFYPKDMTPGCTTEACDFR drved 51 1.00 F 15613511 28, 1 20 tfthv DLYGKYTILFFFPKAGTSGCTREAVEFS renfe 47 1.00 F 15643152 30, 1 61 gltda LADNRAVVLFFYPFDFSPVCATELCAIQ narwf 88 1.00 F 15790738 35, 1 26 itlss YRGQSHVVLVFYPLDFSPVCSMQLPEYS gsqdd 53 1.00 F 15807234 36, 1 28 vnlae LFKGKKGVLFGVPGAFTPGCSKTHLPGF veqae 55 1.00 F 15826629 38, 1 26 vkips DFKGKVVVLAFYPAAFTSVCTKEMCTFR dsmak 53 1.00 F 15899339 39, 1 30 vttel LFKGKRVVLFAVPGAFTPTCSLNHLPGY lenrd 57 1.00 F 15964668 44, 1 50 fnlak ALKKGPVVLYFFPAAYTAGCTAEAREFA eatpe 77 1.00 F 16125919 47, 1 31 fnfkq HTNGKTTVLFFWPMDFTFVCPSELIAFD kryee 58 1.00 F 16501671 51, 1 33 slekn IEDDKWTILFFYPMDFTFVCPTEIVAIS arsde 60 1.00 F 16803644 53, 1 31 vttdd LFAGKTVAVFSLPGAFTPTCSSTHLPGY nelak 58 1.00 F 17229033 60, 1 28 rlsev LKRGRPVVLLFFPGAFTSVCTKELCTFR dkmal 55 1.00 F 18313548 62, 1 26 eislq DYIGKYVVLAFYPLDFTFVCPTEINRFS dlkga 53 1.00 F 19173077 67, 1 27 evtek DTEGRWSVFFFYPADFTFVCPTELGDVA dhyee 54 1.00 F 20151112 68, 1 29 vdtht LFTGRKVVLFAVPGAFTPTCSAKHLPGY veqfe 56 1.00 F 21112072 70, 1 32 qinhk TYEGQWKVVFAWPKDFTFVCPTEIAAFG klnde 59 1.00 F 21223405 71, 1 28 eihly DLKGKKVLLSFHPLAWTQVCAQQMKSLE enyel 55 1.00 F 21227878 73, 1 25 mvsls EFKGRKVLLIFYPGDDTPVCTAQLCDYR nnvaa 52 1.00 F 21674812 81, 1 28 irfhd FLGDSWGILFSHPRDFTPVCTTELGRAA klape 55 1.00 F 3318841 85, 1 10 eidin EYKGKYVVLLFYPLDWTFVCPTEMIGYS evagq 37 1.00 F 4433065 86, 1 32 vsvhs IAAGKKVILFGVPGAFTPTCSMSHVPGF igkae 59 1.00 F 4704732 87, 1 28 fdfyk YVGDNWAILFSHPHDFTPVCTTELAEFG kmhee 55 1.00 F 4996210 88, 1 41 ynask EFANKKVVLFALPGAFTPVCSANHVPEY iqklp 68 1.00 F 5326864 89, 1 88 slkki TENNRVVVFFVYPRASTPGCTRQACGFR dnyqe 115 1.00 F 6322180 90, 1 43 ewskl ISENKKVIITGAPAAFSPTCTVSHIPGY inyld 70 0.99 F 6323138 95, 1 31 evkls DYKGKYVVLFFYPLDFTFVCPTEIIAFS nraed 58 1.00 F 9955016 ***** ****************** ** Column 1 : Sequence Number, Site Number Column 2 : Left End Location Column 4 : Motif Element Column 5 : Right End Location Column 6 : Probability of Element Column 7 : Forward Motif (F) or Reverse Complement (R) Column 8 : Sequence Description from Fast A input Log Motif portion of MAP for motif d = -1668.31468 Log Fragmentation portion of MAP for motif d = -7.86327 Log Background portion of Map = -39912.17887 Log Alignment portion of Map = -956.36102 Log Site/seq portion of Map = 0.00000 Log Null Map = -46943.36311 Log Map = 2112.13301 log MAP = sum of motif and fragmentation parts of MAP + background + alignment + sites/seq - Null Frequency Map = 2109.909622 Nearopt Map = 2111.157969 Maximal Map = 2111.157969 Total Time 105 sec (1.750000 min) Elapsed time: 104.960000 secs DOF[0] = 190 DOF[1] = 285 DOF[2] = 380 DOF[3] = 475 """ #run if called from command-line if __name__ == "__main__": main()