From b6b932e5c0bd65384015c759ebf281e561e4da07 Mon Sep 17 00:00:00 2001 From: Jeet Sukumaran Date: Tue, 23 Jun 2015 10:04:34 -0400 Subject: [PATCH] Do not run PAUP-based tests unless path to PAUP is provided --- README.rst | 15 ++ dendropy/interop/paup.py | 2 +- dendropy/test/test_datamodel_split_bitmasks.py | 221 +++++++++++++------------ 3 files changed, 129 insertions(+), 109 deletions(-) --- a/README.rst +++ b/README.rst @@ -67,6 +67,21 @@ Testing If this variable is not set or set to "NONE", then any tests that rely on PAUP* will NOT be run. +.. note:: + + Note that some tests rely on PAUP* being available on your system. + You will need to set the environmental variable ``DENDROPY_PAUP_EXECUTABLE_PATH`` to the path + of the PAUP* executable for these tests to be run, e.g.:: + + DENDROPY_PAUP_EXECUTABLE_PATH=/usr/local/bin/paup python setup.py test + + or:: + + DENDROPY_PAUP_EXECUTABLE_PATH=/usr/local/bin/paup python -m unittest + + If this variable is not set or set to "NONE", then any tests that rely on + PAUP* will NOT be run. + Tests can be run by typing:: $ python -m dendropy.test