Description: fix multiple invalid escape sequences. This change fixes multiple variations around the following symptom: . SyntaxWarning: invalid escape sequence Author: Étienne Mollier Forwarded: no Last-Update: 2024-09-21 --- This patch header follows DEP-3: http://dep.debian.net/deps/dep3/ --- python-ete3.orig/ete3/coretype/tree.py +++ python-ete3/ete3/coretype/tree.py @@ -362,7 +362,7 @@ return self.up.remove_child(sister) def delete(self, prevent_nondicotomic=True, preserve_branch_length=False): - """ + r""" Deletes node from the tree structure. Notice that this method makes 'disappear' the node from the tree structure. This means that children from the deleted node are transferred to the @@ -433,7 +433,7 @@ def prune(self, nodes, preserve_branch_length=False): - """Prunes the topology of a node to conserve only the selected list of leaf + r"""Prunes the topology of a node to conserve only the selected list of leaf internal nodes. The minimum number of nodes that conserve the topological relationships among the requested nodes will be retained. Root node is always conserved. @@ -1505,7 +1505,7 @@ def ladderize(self, direction=0): - """ + r""" .. versionadded: 2.1 Sort the branches of a given tree (swapping children nodes) --- python-ete3.orig/ete3/evol/evoltree.py +++ python-ete3/ete3/evol/evoltree.py @@ -465,10 +465,10 @@ from re import sub if int(format) == 11: nwk = ' %s 1\n' % (len(self)) - nwk += sub('\[&&NHX:mark=([ #0-9.]*)\]', r'\1', + nwk += sub(r'\[&&NHX:mark=([ #0-9.]*)\]', r'\1', write_newick(self, features=['mark'], format=9)) elif int(format) == 10: - nwk = sub('\[&&NHX:mark=([ #0-9.]*)\]', r'\1', + nwk = sub(r'\[&&NHX:mark=([ #0-9.]*)\]', r'\1', write_newick(self, features=['mark'], format=9)) else: nwk = write_newick(self, features=features, format=format) --- python-ete3.orig/ete3/evol/model.py +++ python-ete3/ete3/evol/model.py @@ -364,8 +364,8 @@ ''' check that model name corresponds to one of the available ''' - if sub('\..*', '', model) in AVAIL: - return model, AVAIL [sub('\..*', '', model)] + if sub(r'\..*', '', model) in AVAIL: + return model, AVAIL [sub(r'\..*', '', model)] --- python-ete3.orig/ete3/evol/parser/codemlparser.py +++ python-ete3/ete3/evol/parser/codemlparser.py @@ -71,25 +71,25 @@ for line in open(path): # get number of classes of sites if line.startswith ('dN/dS '): - k = int(re.sub ('.* \(K=([0-9]+)\)\n', '\\1', line)) + k = int(re.sub (r'.* \(K=([0-9]+)\)\n', '\\1', line)) continue # get values of omega and proportions if typ is None and \ - re.match ('^[a-z]+.*(\d+\.\d{5} *){'+ str(k) +'}', line): + re.match (r'^[a-z]+.*(\d+\.\d{5} *){'+ str(k) +'}', line): var = re.sub (':', '', line.split(' ')[0]) if var.startswith ('p'): var = 'proportions' - classes[var] = [float(v) for v in re.findall('\d+\.\d{5}', line)] + classes[var] = [float(v) for v in re.findall(r'\d+\.\d{5}', line)] continue # parse NEB and BEB tables if '(BEB)' in line : - k = int(re.sub('.*for (\d+) classes.*\n', '\\1', line)) + k = int(re.sub(r'.*for (\d+) classes.*\n', '\\1', line)) typ = 'BEB' sites[typ] = {} n_classes[typ] = k continue if '(NEB)' in line : - k = int(re.sub('.*for (\d+) classes.*\n', '\\1', line)) + k = int(re.sub(r'.*for (\d+) classes.*\n', '\\1', line)) typ = 'NEB' sites[typ] = {} n_classes[typ] = k @@ -214,7 +214,7 @@ # if we do not have tree, load it if model._tree is None: from ..evol import EvolTree - model._tree = EvolTree (re.findall ('\(.*\);', ''.join(all_lines))[2]) + model._tree = EvolTree (re.findall (r'\(.*\);', ''.join(all_lines))[2]) model._tree._label_as_paml() # starts parsing for i, line in enumerate (all_lines): @@ -224,7 +224,7 @@ if line.startswith('Codon frequencies under model'): model.stats ['codonFreq'] = [] for j in range (16): - line = list(map (float, re.findall ('\d\.\d+', all_lines [i+j+1]))) + line = list(map (float, re.findall (r'\d\.\d+', all_lines [i+j+1]))) model.stats ['codonFreq'] += [line] continue if line.startswith('Nei & Gojobori 1986'): @@ -237,32 +237,32 @@ # lnL and number of parameters if line.startswith ('lnL'): try: - line = re.sub ('.* np: *(\d+)\): +(-\d+\.\d+).*', + line = re.sub (r'.* np: *(\d+)\): +(-\d+\.\d+).*', '\\1 \\2', line) model.stats ['np' ] = int (line.split()[0]) model.stats ['lnL'] = float (line.split()[1]) except ValueError: - line = re.sub ('.* np: *(\d+)\): +(nan).*', + line = re.sub (r'.* np: *(\d+)\): +(nan).*', '\\1 \\2', line) model.stats ['np' ] = int (line.split()[0]) model.stats ['lnL'] = float ('-inf') continue # get labels of internal branches if line.count('..') >= 2: - labels = re.findall ('\d+\.\.\d+', line + ' ') + labels = re.findall (r'\d+\.\.\d+', line + ' ') _check_paml_labels (model._tree, labels, pamout, model) continue # retrieve kappa if line.startswith ('kappa '): try: - model.stats ['kappa'] = float (re.sub ('.*(\d+\.\d+).*', + model.stats ['kappa'] = float (re.sub (r'.*(\d+\.\d+).*', '\\1', line)) except ValueError: model.stats ['kappa'] = 'nan' # retrieve dS dN t w N S and if present, errors. from summary table if line.count('..') == 1 and line.startswith (' '): - if not re.match (' +\d+\.\.\d+ +\d+\.\d+ ', line): - if re.match (' +( +\d+\.\d+){8}', all_lines [i+1]): + if not re.match (r' +\d+\.\.\d+ +\d+\.\d+ ', line): + if re.match (r' +( +\d+\.\d+){8}', all_lines [i+1]): _get_values (model, line.split ()[0]+' '+all_lines [i+1]) continue _get_values (model, line) --- python-ete3.orig/ete3/parser/newick.py +++ python-ete3/ete3/parser/newick.py @@ -48,11 +48,11 @@ ITERABLE_TYPES = set([list, set, tuple, frozenset]) # Regular expressions used for reading newick format -_ILEGAL_NEWICK_CHARS = ":;(),\[\]\t\n\r=" +_ILEGAL_NEWICK_CHARS = r":;(),\[\]\t\n\r=" _NON_PRINTABLE_CHARS_RE = "[\x00-\x1f]+" -_NHX_RE = "\[&&NHX:[^\]]*\]" -_FLOAT_RE = "\s*[+-]?\d+\.?\d*(?:[eE][-+]?\d+)?\s*" +_NHX_RE = r"\[&&NHX:[^\]]*\]" +_FLOAT_RE = r"\s*[+-]?\d+\.?\d*(?:[eE][-+]?\d+)?\s*" #_FLOAT_RE = "[+-]?\d+\.?\d*" #_NAME_RE = "[^():,;\[\]]+" _NAME_RE = "[^():,;]+?" @@ -399,7 +399,7 @@ SECOND_MATCH += "?" - matcher_str= '^\s*%s\s*%s\s*(%s)?\s*$' % (FIRST_MATCH, SECOND_MATCH, _NHX_RE) + matcher_str= r'^\s*%s\s*%s\s*(%s)?\s*$' % (FIRST_MATCH, SECOND_MATCH, _NHX_RE) compiled_matcher = re.compile(matcher_str) matchers[node_type] = [container1, container2, converterFn1, converterFn2, compiled_matcher] --- python-ete3.orig/ete3/parser/phylip.py +++ python-ete3/ete3/parser/phylip.py @@ -73,7 +73,7 @@ continue # Reads head if not nchar or not ntax: - m = re.match("^\s*(\d+)\s+(\d+)",line) + m = re.match(r"^\s*(\d+)\s+(\d+)",line) if m: ntax = int (m.groups()[0]) nchar = int (m.groups()[1]) @@ -105,7 +105,7 @@ line = m.groups()[1] else: raise Exception("Wrong phylip sequencial format.") - SG.id2seq[id_counter] += re.sub("\s","", line) + SG.id2seq[id_counter] += re.sub(r"\s","", line) if len(SG.id2seq[id_counter]) == nchar: id_counter += 1 name = None @@ -120,7 +120,7 @@ if m: name = m.groups()[0].strip() - seq = re.sub("\s","",m.groups()[1]) + seq = re.sub(r"\s","",m.groups()[1]) SG.id2seq[id_counter] = seq SG.id2name[id_counter] = name if fix_duplicates and name in SG.name2id: @@ -135,7 +135,7 @@ else: raise Exception("Unexpected number of sequences.") else: - seq = re.sub("\s", "", line) + seq = re.sub(r"\s", "", line) if id_counter == len(SG): id_counter = 0 SG.id2seq[id_counter] += seq --- python-ete3.orig/ete3/phylo/phylotree.py +++ python-ete3/ete3/phylo/phylotree.py @@ -129,7 +129,7 @@ return ''.join([pre, node.name, fstring, post]) if newick_only: - id_match = re.compile("([^0-9])?(\d+)([^0-9])?") + id_match = re.compile(r"([^0-9])?(\d+)([^0-9])?") for nw in sp_trees: yield re.sub(id_match, _nodereplacer, str(nw)+";") else: @@ -185,7 +185,7 @@ return ''.join([pre, node.name, fstring, post]) if newick_only: - id_match = re.compile("([^0-9])(\d+)([^0-9])") + id_match = re.compile(r"([^0-9])(\d+)([^0-9])") for nw in sptrees: yield re.sub(id_match, _nodereplacer, str(nw)+";") else: --- python-ete3.orig/ete3/phylomedb/phylomeDB3.py +++ python-ete3/ete3/phylomedb/phylomeDB3.py @@ -72,7 +72,7 @@ def extract_species_name(name): return name.split("_")[1] -ID_PATTERN = re.compile("^[Pp][Hh][Yy]\w{7}(_\w{2,7})?$") +ID_PATTERN = re.compile(r"^[Pp][Hh][Yy]\w{7}(_\w{2,7})?$") ITERABLE_TYPES = set([list, set, tuple, frozenset]) __all__ = ["PhylomeDB3Connector"] @@ -150,7 +150,7 @@ """ def clean_name(name): quote = lambda x: '"%s"' %x - m = re.search("Phy(\w{7})_[\w\d]+", name) + m = re.search(r"Phy(\w{7})_[\w\d]+", name) if m: return quote(m.groups()[0]) @@ -497,7 +497,7 @@ """ # Check whether the input code is a valid former phylomeDB id or not - QUERY_OLD_REGEXP_FILTER = "^\w{3}\d{1,}$" + QUERY_OLD_REGEXP_FILTER = r"^\w{3}\d{1,}$" if not re.match(QUERY_OLD_REGEXP_FILTER, old_id): return None @@ -753,9 +753,9 @@ query = id.strip() # To avoid weird queries which creates slow or invalid MYSQL queries - QUERY_GEN_REGEXP_FILTER = "^[\w\d\-_,;:.|#@\/\\\()'<>!]+$" - QUERY_OLD_REGEXP_FILTER = "^\w{3}\d{1,}$" - QUERY_INT_REGEXP_FILTER = "^[Pp][Hh][Yy]\w{7}(_\w{2,7})?$" + QUERY_GEN_REGEXP_FILTER = r"^[\w\d\-_,;:.|#@\/\\\()'<>!]+$" + QUERY_OLD_REGEXP_FILTER = r"^\w{3}\d{1,}$" + QUERY_INT_REGEXP_FILTER = r"^[Pp][Hh][Yy]\w{7}(_\w{2,7})?$" phylomeDB_matches = {} # First, check if it is a current phylomeDB ID --- python-ete3.orig/ete3/tools/utils.py +++ python-ete3/ete3/tools/utils.py @@ -25,7 +25,7 @@ return "%s%s%s" %(COLORS[color], string, COLORS[None]) def clear_color(string): - return re.sub("\\033\[[^m]+m", "", string) + return re.sub("\\033\\[[^m]+m", "", string) def which(program): def is_exe(fpath): --- python-ete3.orig/ete3/treeview/faces.py +++ python-ete3/ete3/treeview/faces.py @@ -156,7 +156,7 @@ "RectFace", "StackedBarFace", "SVGFace", "DiamondFace"] class Face(object): - """Base Face object. All Face types (i.e. TextFace, SeqMotifFace, + r"""Base Face object. All Face types (i.e. TextFace, SeqMotifFace, etc.) inherit the following options: :param 0 margin_left: in pixels --- python-ete3.orig/ete3/treeview/main.py +++ python-ete3/ete3/treeview/main.py @@ -61,7 +61,7 @@ _LINE_TYPE_CHECKER = lambda x: x in (0,1,2) _SIZE_CHECKER = lambda x: isinstance(x, int) -_COLOR_MATCH = re.compile("^#[A-Fa-f\d]{6}$") +_COLOR_MATCH = re.compile(r"^#[A-Fa-f\d]{6}$") _COLOR_CHECKER = lambda x: x.lower() in SVG_COLORS or re.match(_COLOR_MATCH, x) _NODE_TYPE_CHECKER = lambda x: x in ["sphere", "circle", "square"] _BOOL_CHECKER = lambda x: isinstance(x, bool) or x in (0,1) @@ -709,9 +709,9 @@ # Fix a very annoying problem with Radial gradients in # inkscape and browsers... compatible_code = compatible_code.replace("xml:id=", "id=") - compatible_code = re.sub('font-size="(\d+)"', 'font-size="\\1pt"', compatible_code) + compatible_code = re.sub(r'font-size="(\d+)"', 'font-size="\\1pt"', compatible_code) compatible_code = compatible_code.replace('\n', ' ') - compatible_code = re.sub(']+>\s*', '', compatible_code) + compatible_code = re.sub(r']+>\s*', '', compatible_code) # End of fix if ipython_inline: from IPython.core.display import SVG --- python-ete3.orig/ete3/utils.py +++ python-ete3/ete3/utils.py @@ -79,7 +79,7 @@ return "%s%s%s" %(SHELL_COLORS[color], string, SHELL_COLORS[None]) def clear_color(string): - return re.sub("\\033\[[^m]+m", "", string) + return re.sub("\\033\\[[^m]+m", "", string) def print_table(items, header=None, wrap=True, max_col_width=20, wrap_style="wrap", row_line=False, fix_col_width=False, title=None): --- python-ete3.orig/ete3/phylomedb/phylomeDB.py +++ python-ete3/ete3/phylomedb/phylomeDB.py @@ -252,8 +252,8 @@ # This is to avoid weird queryIDs which make create slow or # invalid MYSQL queries - QUERYID_GENERAL_REGEXP_FILTER = "^[\w\d\-_,;:.|#@\/\\\()'<>!]+$" - QUERYID_INTERNAL_ID_REGEXP_FILTER = "^\w{3}\d{7}$" + QUERYID_GENERAL_REGEXP_FILTER = r"^[\w\d\-_,;:.|#@\/\\\()'<>!]+$" + QUERYID_INTERNAL_ID_REGEXP_FILTER = r"^\w{3}\d{7}$" phyID_matches = [] # First check if id is a phylomeID --- python-ete3.orig/ete3/tools/common.py +++ python-ete3/ete3/tools/common.py @@ -155,7 +155,7 @@ return string def parse_value(fvalue): - func_match = re.search("(\w+)\(([^)]*)\)", fvalue) + func_match = re.search(r"(\w+)\(([^)]*)\)", fvalue) if func_match: func_name = func_match.groups()[0] func_arg = func_match.groups()[1] --- python-ete3.orig/ete3/tools/ete_build.py +++ python-ete3/ete3/tools/ete_build.py @@ -815,7 +815,7 @@ " expression will be assumed as sequence name. By default, all " " characthers until the first blank space or tab delimiter are " " used as the sequence names."), - default='^([^\s]+)') + default=r'^([^\s]+)') input_group.add_argument("--no-seq-rename", dest="seq_rename", action="store_false", --- python-ete3.orig/ete3/tools/ete_build_lib/interface.py +++ python-ete3/ete3/tools/ete_build_lib/interface.py @@ -111,7 +111,7 @@ class Screen(StringIO): # tags used to control color of strings and select buffer - TAG = re.compile("@@((\d+),)?(\d+):", re.MULTILINE) + TAG = re.compile(r"@@((\d+),)?(\d+):", re.MULTILINE) def __init__(self, windows): StringIO.__init__(self) self.windows = windows --- python-ete3.orig/ete3/tools/ete_build_lib/sge.py +++ python-ete3/ete3/tools/ete_build_lib/sge.py @@ -53,7 +53,7 @@ from . import db from .errors import SgeError from .utils import GLOBALS -OK_PATTERN = 'Your job-array ([\d]+).\d+\-\d+:\d+ \("[^"]*"\) has been submitted' +OK_PATTERN = r'Your job-array ([\d]+).\d+\-\d+:\d+ \("[^"]*"\) has been submitted' DEFAULT_SGE_CELL = "cgenomics" def launch_jobs(jobs, conf): --- python-ete3.orig/ete3/tools/ete_build_lib/task/iqtree.py +++ python-ete3/ete3/tools/ete_build_lib/task/iqtree.py @@ -74,7 +74,7 @@ stats_file = os.path.join(j.jobdir, self.alg_phylip_file+".iqtree") - m = re.search('Log-likelihood of the tree:\s+(-?\d+\.\d+)', + m = re.search(r'Log-likelihood of the tree:\s+(-?\d+\.\d+)', open(stats_file).read()) lk = float(m.groups()[0]) stats = {"lk": lk} --- python-ete3.orig/ete3/tools/ete_build_lib/task/phyml.py +++ python-ete3/ete3/tools/ete_build_lib/task/phyml.py @@ -167,7 +167,7 @@ stats_file = os.path.join(j.jobdir, self.alg_phylip_file+"_phyml_stats.txt") - m = re.search('Log-likelihood:\s+(-?\d+\.\d+)', + m = re.search(r'Log-likelihood:\s+(-?\d+\.\d+)', open(stats_file).read()) lk = float(m.groups()[0]) stats = {"lk": lk} --- python-ete3.orig/ete3/tools/ete_build_lib/task/prottest.py +++ python-ete3/ete3/tools/ete_build_lib/task/prottest.py @@ -132,7 +132,7 @@ stats_file = pjoin(phyml_job.jobdir, self.alg_phylip_file+"_phyml_stats.txt") tree = PhyloTree(tree_file) - m = re.search('Log-likelihood:\s+(-?\d+\.\d+)', + m = re.search(r'Log-likelihood:\s+(-?\d+\.\d+)', open(stats_file).read()) lk = float(m.groups()[0]) tree.add_feature("lk", lk) --- python-ete3.orig/ete3/tools/ete_build_lib/task/prottest2.py +++ python-ete3/ete3/tools/ete_build_lib/task/prottest2.py @@ -136,7 +136,7 @@ stats_file = os.path.join(j.jobdir, self.alg_basename+"_phyml_stats.txt") tree = PhyloTree(tree_file) - m = re.search('Log-likelihood:\s+(-?\d+\.\d+)', + m = re.search(r'Log-likelihood:\s+(-?\d+\.\d+)', open(stats_file).read()) lk = float(m.groups()[0]) tree.add_feature("lk", lk) --- python-ete3.orig/ete3/tools/ete_build_lib/task/raxml.py +++ python-ete3/ete3/tools/ete_build_lib/task/raxml.py @@ -268,10 +268,10 @@ "RAxML_fastTreeSH_Support." + self.alrt_job.args["-n"]) raw_nw = open(alrt_tree_file).read() try: - nw, nsubs = re.subn(":(\d+\.\d+)\[(\d+)\]", parse_alrt, raw_nw, flags=re.MULTILINE) + nw, nsubs = re.subn(r":(\d+\.\d+)\[(\d+)\]", parse_alrt, raw_nw, flags=re.MULTILINE) except TypeError: raw_nw = raw_nw.replace("\n","") - nw, nsubs = re.subn(":(\d+\.\d+)\[(\d+)\]", parse_alrt, raw_nw) + nw, nsubs = re.subn(r":(\d+\.\d+)\[(\d+)\]", parse_alrt, raw_nw) if nsubs == 0: log.warning("alrt values were not detected in raxml tree!") tree = Tree(nw) --- python-ete3.orig/ete3/tools/ete_build_lib/utils.py +++ python-ete3/ete3/tools/ete_build_lib/utils.py @@ -372,7 +372,7 @@ return str(i) def _safe_len(i): - return len(re.sub('\\033\[\d+m', '', _str(i))) + return len(re.sub('\\033\\[\\d+m', '', _str(i))) def _safe_rjust(s, just): return (" " * (just - _safe_len(s))) + s @@ -516,7 +516,7 @@ def get_latest_nprdp(basedir): avail_dbs = [] for fname in glob(os.path.join(basedir, "*.db")): - m = re.search("npr\.([\d\.]+)\.db", fname) + m = re.search(r"npr\.([\d\.]+)\.db", fname) if m: avail_dbs.append([float(m.groups()[0]), fname]) @@ -535,7 +535,7 @@ tar = tarfile.open(compressed_path) for member in tar: print(member.name) - m = re.search("npr\.([\d\.]+)\.db", member.name) + m = re.search(r"npr\.([\d\.]+)\.db", member.name) if m: print(member) avail_dbs.append([float(m.groups()[0]), member]) @@ -626,7 +626,7 @@ return "%s%s%s" %(COLORS[color], string, COLORS[None]) def clear_color(string): - return re.sub("\\033\[[^m]+m", "", string) + return re.sub("\\033\\[[^m]+m", "", string) def iter_cog_seqs(cogs_file, spname_delimiter): --- python-ete3.orig/ete3/tools/ete_build_lib/visualize.py +++ python-ete3/ete3/tools/ete_build_lib/visualize.py @@ -198,11 +198,11 @@ name2sp = ncbi.get_name_translator(tree.get_species()) for lf in tree.iter_leaves(): lf.add_features(taxid=name2sp.get(lf.species, [0])[0]) - lf.add_features(genename=re.sub('\{[^}]+\}', '', lf.name).strip()) + lf.add_features(genename=re.sub(r'\{[^}]+\}', '', lf.name).strip()) ncbi.annotate_tree(tree, attr_name='taxid') def spname(name): - m = re.search('\{([^}]+)\}', name) + m = re.search(r'\{([^}]+)\}', name) if m: return m.groups()[0] else: --- python-ete3.orig/ete3/tools/ete_build_lib/workflow/genetree.py +++ python-ete3/ete3/tools/ete_build_lib/workflow/genetree.py @@ -160,7 +160,7 @@ #print output conservation = [] for line in output.split("\n"): - m = re.search("#MaxIdentity\s+(\d+\.\d+)", line) + m = re.search(r"#MaxIdentity\s+(\d+\.\d+)", line) if m: max_identity = float(m.groups()[0]) return max_identity --- python-ete3.orig/ete3/tools/ete_view.py +++ python-ete3/ete3/tools/ete_view.py @@ -206,7 +206,7 @@ for tindex, tfile in enumerate(src_tree_iterator(args)): #print tfile if args.raxml: - nw = re.sub(":(\d+\.\d+)\[(\d+)\]", ":\\1[&&NHX:support=\\2]", open(tfile).read()) + nw = re.sub(r":(\d+\.\d+)\[(\d+)\]", ":\\1[&&NHX:support=\\2]", open(tfile).read()) t = Tree(nw, format=args.src_newick_format) else: t = Tree(tfile, format=args.src_newick_format) @@ -272,7 +272,7 @@ for tindex, tfile in enumerate(src_tree_iterator(args)): #print tfile if args.raxml: - nw = re.sub(":(\d+\.\d+)\[(\d+)\]", ":\\1[&&NHX:support=\\2]", open(tfile).read()) + nw = re.sub(r":(\d+\.\d+)\[(\d+)\]", ":\\1[&&NHX:support=\\2]", open(tfile).read()) t = PhyloTree(nw, format=args.src_newick_format) else: t = PhyloTree(tfile, format=args.src_newick_format) @@ -369,7 +369,7 @@ if fcolor: # Parse color options - auto_m = re.search("auto\(([^)]*)\)", fcolor) + auto_m = re.search(r"auto\(([^)]*)\)", fcolor) if auto_m: target_attr = auto_m.groups()[0].strip() if not target_attr : @@ -389,7 +389,7 @@ if fbgcolor: # Parse color options - auto_m = re.search("auto\(([^)]*)\)", fbgcolor) + auto_m = re.search(r"auto\(([^)]*)\)", fbgcolor) if auto_m: target_attr = auto_m.groups()[0].strip() if not target_attr :