LICENSE
MANIFEST.in
README.rst
requirements.txt
setup.py
doc/source/_templates/class.rst
gffutils/__init__.py
gffutils/attributes.py
gffutils/bins.py
gffutils/biopython_integration.py
gffutils/constants.py
gffutils/convert.py
gffutils/create.py
gffutils/exceptions.py
gffutils/feature.py
gffutils/gffwriter.py
gffutils/helpers.py
gffutils/inspect.py
gffutils/interface.py
gffutils/iterators.py
gffutils/merge_criteria.py
gffutils/parser.py
gffutils/pybedtools_integration.py
gffutils/version.py
gffutils.egg-info/PKG-INFO
gffutils.egg-info/SOURCES.txt
gffutils.egg-info/dependency_links.txt
gffutils.egg-info/requires.txt
gffutils.egg-info/top_level.txt
gffutils/scripts/gffutils-cli
gffutils/scripts/gffutils-flybase-convert.py
gffutils/test/__init__.py
gffutils/test/attr_test_cases.py
gffutils/test/conftest.py
gffutils/test/expected.py
gffutils/test/feature_test.py
gffutils/test/helpers_test.py
gffutils/test/parser_test.py
gffutils/test/performance_evaluation.py
gffutils/test/synth_test_base.py
gffutils/test/test_1.py
gffutils/test/test_biopython_integration.py
gffutils/test/test_cli.py
gffutils/test/test_issues.py
gffutils/test/test_iterators.py
gffutils/test/test_merge.py
gffutils/test/test_merge_all.py
gffutils/test/data/F3-unique-3.v2.gff
gffutils/test/data/FBgn0031208.gff
gffutils/test/data/FBgn0031208.gtf
gffutils/test/data/FBgn0031208.gtf.db
gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.5000_gene_ids.txt
gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.5000_transcript_ids.txt
gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.chromsizes.txt
gffutils/test/data/c_elegans_WS199_ann_gff.txt
gffutils/test/data/c_elegans_WS199_dna_shortened.fa
gffutils/test/data/c_elegans_WS199_shortened_gff.txt
gffutils/test/data/dm6-chr2L.fa
gffutils/test/data/dm6-chr2L.fa.fai
gffutils/test/data/dmel-all-no-analysis-r5.49_50k_lines.gff
gffutils/test/data/download-large-annotation-files.sh
gffutils/test/data/ensembl_gtf.txt
gffutils/test/data/gencode-v19.gtf
gffutils/test/data/gencode.vM8.5000_gene_ids.txt
gffutils/test/data/gencode.vM8.5000_transcript_ids.txt
gffutils/test/data/gencode.vM8.chromsizes.txt
gffutils/test/data/gff_example1.gff3
gffutils/test/data/gff_example1.gff3.gz
gffutils/test/data/glimmer_nokeyval.gff3
gffutils/test/data/gms2_example.gff3
gffutils/test/data/hybrid1.gff3
gffutils/test/data/intro_docs_example.gff
gffutils/test/data/issue167.gff
gffutils/test/data/issue174.gtf
gffutils/test/data/issue_197.gff
gffutils/test/data/jgi_gff2.txt
gffutils/test/data/keep-order-test.gtf
gffutils/test/data/keyval_sep_in_attrs.gff
gffutils/test/data/mouse_extra_comma.gff3
gffutils/test/data/ncbi_gff3.txt
gffutils/test/data/nonascii
gffutils/test/data/random-chr.gff
gffutils/test/data/sharr.gtf
gffutils/test/data/synthetic.gff3
gffutils/test/data/unsanitized.gff
gffutils/test/data/wormbase_gff2.txt
gffutils/test/data/wormbase_gff2_alt.txt