From 9c065b724ddfa2b78ddf3e2e6671cd30a50b0a66 Mon Sep 17 00:00:00 2001 From: David Seifert Date: Wed, 9 Jan 2019 17:56:40 +0100 Subject: [PATCH] Fixes for numpy 1.16 Fixes #120 --- pbcore/io/BasH5IO.py | 5 ++++- 1 file changed, 4 insertions(+), 1 deletion(-) diff --git a/pbcore/io/BasH5IO.py b/pbcore/io/BasH5IO.py index 5db9e80..89d59e6 100644 --- a/pbcore/io/BasH5IO.py +++ b/pbcore/io/BasH5IO.py @@ -281,7 +281,10 @@ def _makeOffsetsDataStructure(h5Group): def _makeRegionTableIndex(regionTableHoleNumbers): # returns a dict: holeNumber -> (startRow, endRow) diffs = np.ediff1d(regionTableHoleNumbers, - to_begin=[1], to_end=[1]) + to_begin=np.array([1], + dtype=regionTableHoleNumbers.dtype), + to_end=np.array([1], + dtype=regionTableHoleNumbers.dtype)) changepoints = np.flatnonzero(diffs) startsAndEnds = zip(changepoints[:-1], changepoints[1:])