From b24746790c7105212e45dc2f40115d231bd8baae Mon Sep 17 00:00:00 2001 From: Nathaniel Echols Date: Tue, 23 Jun 2020 14:14:00 -0700 Subject: [PATCH] [SL-5880] abandon pyxb, use xmlschema for validation if installed (and xsd is defined) Fixes #122 --- Makefile | 6 +- bin/updateXSDs.py | 49 - pbcore/io/dataset/DataSetValidator.py | 40 +- pbcore/io/dataset/pyxb/DataSetXsd.py | 4355 ------------------ pbcore/io/dataset/pyxb/__init__.py | 3 - pbcore/io/dataset/pyxb/_pbbase.py | 5916 ------------------------- pbcore/io/dataset/pyxb/_pbmeta.py | 2967 ------------- pbcore/io/dataset/pyxb/_pbrk.py | 1379 ------ pbcore/io/dataset/pyxb/_pbsample.py | 544 --- setup.py | 4 +- 10 files changed, 23 insertions(+), 15240 deletions(-) delete mode 100755 bin/updateXSDs.py delete mode 100644 pbcore/io/dataset/pyxb/DataSetXsd.py delete mode 100644 pbcore/io/dataset/pyxb/__init__.py delete mode 100644 pbcore/io/dataset/pyxb/_pbbase.py delete mode 100644 pbcore/io/dataset/pyxb/_pbmeta.py delete mode 100644 pbcore/io/dataset/pyxb/_pbrk.py delete mode 100644 pbcore/io/dataset/pyxb/_pbsample.py --- a/Makefile +++ b/Makefile @@ -15,7 +15,7 @@ install: @pip install ./ pylint: - pylint --errors-only --ignore=pyxb --enable=C0411,W0702,W0401,W0611 pbcore/ + pylint --errors-only --enable=C0411,W0702,W0401,W0611 pbcore/ autopep8: find pbcore -name "*.py" | xargs autopep8 -i @@ -69,10 +69,6 @@ publish-to-pypi: @echo " % python setup.py sdist upload -r pypi" -xsd-codegen: - rm -f pbcore/io/dataset/pyxb/DataSetXsd.py - ./bin/updateXSDs.py ../xsd-datamodels/PacBioDatasets.xsd pbcore/io/dataset/pyxb/ - validate-metadata: xmllint --schema ../xsd-datamodels/PacBioCollectionMetadata.xsd pbcore/data/datasets/CollectionMetadata.xml --- a/bin/updateXSDs.py +++ /dev/null @@ -1,49 +0,0 @@ -#!/usr/bin/env python - -import argparse -import tempfile -import shutil -import os -import glob -import subprocess -import shlex - - -def get_files(xsd_dir): - print("Searching ", xsd_dir) - files = [] - for path, subdirs, fns in os.walk(xsd_dir): - for fn in fns: - if fn.endswith('xsd'): - files.append(os.path.join(path, fn)) - return files - -def copy_xsds(xsd, dest): - """Go ahead and copy all xsds, there will likely be many dependencies. If - not, xsds are small""" - files = get_files(os.path.dirname(xsd)) - print("Copying:") - for f in files: - print(f) - for fn in files: - shutil.copy(fn, dest) - -def generate_pyxb(xsd, outdir, modname): - cmd = "pyxbgen -u {x} -m {m} --binding-root {p}".format(x=xsd, m=modname, - p=outdir) - print(cmd) - subprocess.call(shlex.split(cmd)) - -if __name__ == "__main__": - parser = argparse.ArgumentParser() - parser.add_argument("xsd", type=str, - help="the XSD of interest") - parser.add_argument("outdir", type=str) - parser.add_argument("--mod-name", type=str, - default='DataSetXsd') - args = parser.parse_args() - tempd = tempfile.mkdtemp(suffix='xsds') - copy_xsds(args.xsd, tempd) - xsd_name = os.path.basename(args.xsd) - generate_pyxb(os.path.join(tempd, xsd_name), args.outdir, args.mod_name) - shutil.rmtree(tempd) --- a/pbcore/io/dataset/DataSetValidator.py +++ b/pbcore/io/dataset/DataSetValidator.py @@ -6,10 +6,12 @@ from urllib.parse import urlparse, unquote import xml.etree.ElementTree as ET import logging +import os.path as op import os import re XMLNS = "http://pacificbiosciences.com/PacBioDataModel.xsd" +XSD_FILE = os.environ.get("PB_DATASET_XSD", None) log = logging.getLogger(__name__) @@ -65,36 +67,34 @@ def validateMiniXsv(xml_fn, xsd_fn): log.debug('minixsv not found, validation disabled') +def validateXmlschema(xml_src, xsd_file): + try: + import xmlschema + schema = xmlschema.XMLSchema(xsd_file) + schema.validate(xml_src) + except ImportError: + log.debug("xmlschema not found, validation disabled") + + def validateXml(xmlroot, skipResources=False, relTo='.'): if not skipResources: validateResources(xmlroot, relTo) - # Conceal the first characters of UniqueIds if they are legal numbers that - # would for some odd reason be considered invalid. Let all illegal - # characters fall through to the validator. - try: - from pbcore.io.dataset.pyxb import DataSetXsd - log.debug('Validating with PyXb') - fixedString = re.sub('UniqueId="[0-9]', 'UniqueId="f', - ET.tostring(xmlroot)) - fixedString = re.sub('Barcode="[0-9]', 'Barcode="f', - fixedString) - fixedString = re.sub('Pointer>[0-9]', 'Pointer>f', - fixedString) - DataSetXsd.CreateFromDocument(fixedString) - except ImportError: - log.info('PyXb not found, validation disabled') - -def validateFile(xmlfn, skipResources=False): +def validateFile(xmlfn, skipResources=False, xsd_file=XSD_FILE): if ':' in xmlfn: xmlfn = urlparse(xmlfn).path.strip() with open(xmlfn, 'r') as xmlfile: root = ET.parse(xmlfile).getroot() - return validateXml(root, skipResources=skipResources, - relTo=os.path.dirname(xmlfn)) + validateXml(root, + skipResources=skipResources, + relTo=os.path.dirname(xmlfn)) + if xsd_file is not None: + validateXmlschema(xmlString, xsd_file) -def validateString(xmlString, skipResources=False, relTo='.'): +def validateString(xmlString, skipResources=False, relTo='.', xsd_file=XSD_FILE): validateXml(ET.fromstring(xmlString), skipResources, relTo) + if xsd_file is not None: + validateXmlschema(xmlString, xsd_file) --- a/pbcore/io/dataset/pyxb/DataSetXsd.py +++ /dev/null @@ -1,4355 +0,0 @@ -# pbcore/io/dataset/pyxb/DataSetXsd.py -# -*- coding: utf-8 -*- -# PyXB bindings for NM:3dc5b3a98cc462befd746fd05a18986be8ba2691 -# Generated 2020-05-05 09:21:48.253454 by PyXB version 1.2.6 using Python 3.7.3.final.0 -# Namespace http://pacificbiosciences.com/PacBioDatasets.xsd - -from __future__ import unicode_literals -import pyxb -import pyxb.binding -import pyxb.binding.saxer -import io -import pyxb.utils.utility -import pyxb.utils.domutils -import sys -import pyxb.utils.six as _six -# Unique identifier for bindings created at the same time -_GenerationUID = pyxb.utils.utility.UniqueIdentifier('urn:uuid:84ba9ef6-8eec-11ea-9839-005056871a22') - -# Version of PyXB used to generate the bindings -_PyXBVersion = '1.2.6' -# Generated bindings are not compatible across PyXB versions -if pyxb.__version__ != _PyXBVersion: - raise pyxb.PyXBVersionError(_PyXBVersion) - -# A holder for module-level binding classes so we can access them from -# inside class definitions where property names may conflict. -_module_typeBindings = pyxb.utils.utility.Object() - -# Import bindings for namespaces imported into schema -import pyxb.binding.datatypes -import _pbbase as _ImportedBinding__pbbase -import _pbmeta as _ImportedBinding__pbmeta -import _pbsample as _ImportedBinding__pbsample - -# NOTE: All namespace declarations are reserved within the binding -Namespace = pyxb.namespace.NamespaceForURI('http://pacificbiosciences.com/PacBioDatasets.xsd', create_if_missing=True) -Namespace.configureCategories(['typeBinding', 'elementBinding']) -_Namespace_pbmeta = _ImportedBinding__pbmeta.Namespace -_Namespace_pbmeta.configureCategories(['typeBinding', 'elementBinding']) -_Namespace_pbsample = _ImportedBinding__pbsample.Namespace -_Namespace_pbsample.configureCategories(['typeBinding', 'elementBinding']) -_Namespace_pbbase = _ImportedBinding__pbbase.Namespace -_Namespace_pbbase.configureCategories(['typeBinding', 'elementBinding']) - -def CreateFromDocument (xml_text, default_namespace=None, location_base=None): - """Parse the given XML and use the document element to create a - Python instance. - - @param xml_text An XML document. This should be data (Python 2 - str or Python 3 bytes), or a text (Python 2 unicode or Python 3 - str) in the L{pyxb._InputEncoding} encoding. - - @keyword default_namespace The L{pyxb.Namespace} instance to use as the - default namespace where there is no default namespace in scope. - If unspecified or C{None}, the namespace of the module containing - this function will be used. - - @keyword location_base: An object to be recorded as the base of all - L{pyxb.utils.utility.Location} instances associated with events and - objects handled by the parser. You might pass the URI from which - the document was obtained. - """ - - if pyxb.XMLStyle_saxer != pyxb._XMLStyle: - dom = pyxb.utils.domutils.StringToDOM(xml_text) - return CreateFromDOM(dom.documentElement, default_namespace=default_namespace) - if default_namespace is None: - default_namespace = Namespace.fallbackNamespace() - saxer = pyxb.binding.saxer.make_parser(fallback_namespace=default_namespace, location_base=location_base) - handler = saxer.getContentHandler() - xmld = xml_text - if isinstance(xmld, _six.text_type): - xmld = xmld.encode(pyxb._InputEncoding) - saxer.parse(io.BytesIO(xmld)) - instance = handler.rootObject() - return instance - -def CreateFromDOM (node, default_namespace=None): - """Create a Python instance from the given DOM node. - The node tag must correspond to an element declaration in this module. - - @deprecated: Forcing use of DOM interface is unnecessary; use L{CreateFromDocument}.""" - if default_namespace is None: - default_namespace = Namespace.fallbackNamespace() - return pyxb.binding.basis.element.AnyCreateFromDOM(node, default_namespace) - - -# Atomic simple type: [anonymous] -class STD_ANON (pyxb.binding.datatypes.string, pyxb.binding.basis.enumeration_mixin): - - """An atomic simple type.""" - - _ExpandedName = None - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 246, 12) - _Documentation = None -STD_ANON._CF_enumeration = pyxb.binding.facets.CF_enumeration(value_datatype=STD_ANON, enum_prefix=None) -STD_ANON.Instrument = STD_ANON._CF_enumeration.addEnumeration(unicode_value='Instrument', tag='Instrument') -STD_ANON.User = STD_ANON._CF_enumeration.addEnumeration(unicode_value='User', tag='User') -STD_ANON.AnalysisJob = STD_ANON._CF_enumeration.addEnumeration(unicode_value='AnalysisJob', tag='AnalysisJob') -STD_ANON._InitializeFacetMap(STD_ANON._CF_enumeration) -_module_typeBindings.STD_ANON = STD_ANON - -# Complex type [anonymous] with content type ELEMENT_ONLY -class CTD_ANON (pyxb.binding.basis.complexTypeDefinition): - """Complex type [anonymous] with content type ELEMENT_ONLY""" - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = None - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 141, 4) - _ElementMap = {} - _AttributeMap = {} - # Base type is pyxb.binding.datatypes.anyType - - # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}Subset uses Python identifier Subset - __Subset = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Subset'), 'Subset', '__httppacificbiosciences_comPacBioDatasets_xsd_CTD_ANON_httppacificbiosciences_comPacBioDatasets_xsdSubset', True, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 143, 8), ) - - - Subset = property(__Subset.value, __Subset.set, None, None) - - _ElementMap.update({ - __Subset.name() : __Subset - }) - _AttributeMap.update({ - - }) -_module_typeBindings.CTD_ANON = CTD_ANON - - -# Complex type {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetMetadataType with content type ELEMENT_ONLY -class DataSetMetadataType (pyxb.binding.basis.complexTypeDefinition): - """Extend this type to provide DataSetMetadata element in each DataSet.""" - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'DataSetMetadataType') - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 229, 2) - _ElementMap = {} - _AttributeMap = {} - # Base type is pyxb.binding.datatypes.anyType - - # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}TotalLength uses Python identifier TotalLength - __TotalLength = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'TotalLength'), 'TotalLength', '__httppacificbiosciences_comPacBioDatasets_xsd_DataSetMetadataType_httppacificbiosciences_comPacBioDatasets_xsdTotalLength', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 234, 6), ) - - - TotalLength = property(__TotalLength.value, __TotalLength.set, None, None) - - - # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}NumRecords uses Python identifier NumRecords - __NumRecords = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'NumRecords'), 'NumRecords', '__httppacificbiosciences_comPacBioDatasets_xsd_DataSetMetadataType_httppacificbiosciences_comPacBioDatasets_xsdNumRecords', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 235, 6), ) - - - NumRecords = property(__NumRecords.value, __NumRecords.set, None, None) - - - # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}Provenance uses Python identifier Provenance - __Provenance = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Provenance'), 'Provenance', '__httppacificbiosciences_comPacBioDatasets_xsd_DataSetMetadataType_httppacificbiosciences_comPacBioDatasets_xsdProvenance', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 236, 6), ) - - - Provenance = property(__Provenance.value, __Provenance.set, None, None) - - _ElementMap.update({ - __TotalLength.name() : __TotalLength, - __NumRecords.name() : __NumRecords, - __Provenance.name() : __Provenance - }) - _AttributeMap.update({ - - }) -_module_typeBindings.DataSetMetadataType = DataSetMetadataType -Namespace.addCategoryObject('typeBinding', 'DataSetMetadataType', DataSetMetadataType) - - -# Complex type {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetRootType with content type ELEMENT_ONLY -class DataSetRootType (pyxb.binding.basis.complexTypeDefinition): - """Complex type {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetRootType with content type ELEMENT_ONLY""" - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'DataSetRootType') - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 258, 2) - _ElementMap = {} - _AttributeMap = {} - # Base type is pyxb.binding.datatypes.anyType - - # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}AlignmentSet uses Python identifier AlignmentSet - __AlignmentSet = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'AlignmentSet'), 'AlignmentSet', '__httppacificbiosciences_comPacBioDatasets_xsd_DataSetRootType_httppacificbiosciences_comPacBioDatasets_xsdAlignmentSet', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 8, 2), ) - - - AlignmentSet = property(__AlignmentSet.value, __AlignmentSet.set, None, 'DataSets for aligned subreads and CCS reads.') - - - # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}BarcodeSet uses Python identifier BarcodeSet - __BarcodeSet = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'BarcodeSet'), 'BarcodeSet', '__httppacificbiosciences_comPacBioDatasets_xsd_DataSetRootType_httppacificbiosciences_comPacBioDatasets_xsdBarcodeSet', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 18, 2), ) - - - BarcodeSet = property(__BarcodeSet.value, __BarcodeSet.set, None, 'DataSets of Barcodes. Basically a thin metadata layer on top of the barcode FASTA.') - - - # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}ConsensusAlignmentSet uses Python identifier ConsensusAlignmentSet - __ConsensusAlignmentSet = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'ConsensusAlignmentSet'), 'ConsensusAlignmentSet', '__httppacificbiosciences_comPacBioDatasets_xsd_DataSetRootType_httppacificbiosciences_comPacBioDatasets_xsdConsensusAlignmentSet', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 28, 2), ) - - - ConsensusAlignmentSet = property(__ConsensusAlignmentSet.value, __ConsensusAlignmentSet.set, None, 'DataSets of aligned CCS reads.') - - - # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}TranscriptAlignmentSet uses Python identifier TranscriptAlignmentSet - __TranscriptAlignmentSet = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'TranscriptAlignmentSet'), 'TranscriptAlignmentSet', '__httppacificbiosciences_comPacBioDatasets_xsd_DataSetRootType_httppacificbiosciences_comPacBioDatasets_xsdTranscriptAlignmentSet', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 38, 2), ) - - - TranscriptAlignmentSet = property(__TranscriptAlignmentSet.value, __TranscriptAlignmentSet.set, None, 'DataSets of aligned RNA transcripts.') - - - # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}ConsensusReadSet uses Python identifier ConsensusReadSet - __ConsensusReadSet = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'ConsensusReadSet'), 'ConsensusReadSet', '__httppacificbiosciences_comPacBioDatasets_xsd_DataSetRootType_httppacificbiosciences_comPacBioDatasets_xsdConsensusReadSet', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 48, 2), ) - - - ConsensusReadSet = property(__ConsensusReadSet.value, __ConsensusReadSet.set, None, 'DataSets of CCS reads (typically in unaligned BAM format).') - - - # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}TranscriptSet uses Python identifier TranscriptSet - __TranscriptSet = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'TranscriptSet'), 'TranscriptSet', '__httppacificbiosciences_comPacBioDatasets_xsd_DataSetRootType_httppacificbiosciences_comPacBioDatasets_xsdTranscriptSet', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 58, 2), ) - - - TranscriptSet = property(__TranscriptSet.value, __TranscriptSet.set, None, 'DataSet for processed Iso-Seq transcripts.') - - - # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}ContigSet uses Python identifier ContigSet - __ContigSet = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'ContigSet'), 'ContigSet', '__httppacificbiosciences_comPacBioDatasets_xsd_DataSetRootType_httppacificbiosciences_comPacBioDatasets_xsdContigSet', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 91, 2), ) - - - ContigSet = property(__ContigSet.value, __ContigSet.set, None, 'DataSets of contigs sequences. Basically a thin metadata layer on top of a contigs FASTA (e.g. from HGAP).') - - - # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}HdfSubreadSet uses Python identifier HdfSubreadSet - __HdfSubreadSet = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'HdfSubreadSet'), 'HdfSubreadSet', '__httppacificbiosciences_comPacBioDatasets_xsd_DataSetRootType_httppacificbiosciences_comPacBioDatasets_xsdHdfSubreadSet', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 103, 2), ) - - - HdfSubreadSet = property(__HdfSubreadSet.value, __HdfSubreadSet.set, None, 'DataSets of subreads in bax.h5 or bas.h5 format.') - - - # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}ReferenceSet uses Python identifier ReferenceSet - __ReferenceSet = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'ReferenceSet'), 'ReferenceSet', '__httppacificbiosciences_comPacBioDatasets_xsd_DataSetRootType_httppacificbiosciences_comPacBioDatasets_xsdReferenceSet', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 113, 2), ) - - - ReferenceSet = property(__ReferenceSet.value, __ReferenceSet.set, None, 'DataSets of reference sequences. Replaces the reference.info.xml.') - - - # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}SubreadSet uses Python identifier SubreadSet - __SubreadSet = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'SubreadSet'), 'SubreadSet', '__httppacificbiosciences_comPacBioDatasets_xsd_DataSetRootType_httppacificbiosciences_comPacBioDatasets_xsdSubreadSet', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 133, 2), ) - - - SubreadSet = property(__SubreadSet.value, __SubreadSet.set, None, None) - - _ElementMap.update({ - __AlignmentSet.name() : __AlignmentSet, - __BarcodeSet.name() : __BarcodeSet, - __ConsensusAlignmentSet.name() : __ConsensusAlignmentSet, - __TranscriptAlignmentSet.name() : __TranscriptAlignmentSet, - __ConsensusReadSet.name() : __ConsensusReadSet, - __TranscriptSet.name() : __TranscriptSet, - __ContigSet.name() : __ContigSet, - __HdfSubreadSet.name() : __HdfSubreadSet, - __ReferenceSet.name() : __ReferenceSet, - __SubreadSet.name() : __SubreadSet - }) - _AttributeMap.update({ - - }) -_module_typeBindings.DataSetRootType = DataSetRootType -Namespace.addCategoryObject('typeBinding', 'DataSetRootType', DataSetRootType) - - -# Complex type [anonymous] with content type ELEMENT_ONLY -class CTD_ANON_ (pyxb.binding.basis.complexTypeDefinition): - """The set of filters defined here apply to the resident data set. Should DataSet subsets be created out of this parent DataSet, each sub-DataSet may contain its own filters.""" - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = None - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 281, 12) - _ElementMap = {} - _AttributeMap = {} - # Base type is pyxb.binding.datatypes.anyType - - # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}Filter uses Python identifier Filter - __Filter = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Filter'), 'Filter', '__httppacificbiosciences_comPacBioDatasets_xsd_CTD_ANON__httppacificbiosciences_comPacBioDatasets_xsdFilter', True, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 283, 16), ) - - - Filter = property(__Filter.value, __Filter.set, None, None) - - _ElementMap.update({ - __Filter.name() : __Filter - }) - _AttributeMap.update({ - - }) -_module_typeBindings.CTD_ANON_ = CTD_ANON_ - - -# Complex type [anonymous] with content type ELEMENT_ONLY -class CTD_ANON_2 (pyxb.binding.basis.complexTypeDefinition): - """Complex type [anonymous] with content type ELEMENT_ONLY""" - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = None - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 288, 12) - _ElementMap = {} - _AttributeMap = {} - # Base type is pyxb.binding.datatypes.anyType - - # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSet uses Python identifier DataSet - __DataSet = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'DataSet'), 'DataSet', '__httppacificbiosciences_comPacBioDatasets_xsd_CTD_ANON_2_httppacificbiosciences_comPacBioDatasets_xsdDataSet', True, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 101, 2), ) - - - DataSet = property(__DataSet.value, __DataSet.set, None, None) - - _ElementMap.update({ - __DataSet.name() : __DataSet - }) - _AttributeMap.update({ - - }) -_module_typeBindings.CTD_ANON_2 = CTD_ANON_2 - - -# Complex type [anonymous] with content type ELEMENT_ONLY -class CTD_ANON_3 (pyxb.binding.basis.complexTypeDefinition): - """Complex type [anonymous] with content type ELEMENT_ONLY""" - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = None - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 305, 12) - _ElementMap = {} - _AttributeMap = {} - # Base type is pyxb.binding.datatypes.anyType - - # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}AdapterDimerFraction uses Python identifier AdapterDimerFraction - __AdapterDimerFraction = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'AdapterDimerFraction'), 'AdapterDimerFraction', '__httppacificbiosciences_comPacBioDatasets_xsd_CTD_ANON_3_httppacificbiosciences_comPacBioDatasets_xsdAdapterDimerFraction', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 307, 16), ) - - - AdapterDimerFraction = property(__AdapterDimerFraction.value, __AdapterDimerFraction.set, None, None) - - - # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}ShortInsertFraction uses Python identifier ShortInsertFraction - __ShortInsertFraction = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'ShortInsertFraction'), 'ShortInsertFraction', '__httppacificbiosciences_comPacBioDatasets_xsd_CTD_ANON_3_httppacificbiosciences_comPacBioDatasets_xsdShortInsertFraction', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 308, 16), ) - - - ShortInsertFraction = property(__ShortInsertFraction.value, __ShortInsertFraction.set, None, None) - - - # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}NumSequencingZmws uses Python identifier NumSequencingZmws - __NumSequencingZmws = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'NumSequencingZmws'), 'NumSequencingZmws', '__httppacificbiosciences_comPacBioDatasets_xsd_CTD_ANON_3_httppacificbiosciences_comPacBioDatasets_xsdNumSequencingZmws', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 309, 16), ) - - - NumSequencingZmws = property(__NumSequencingZmws.value, __NumSequencingZmws.set, None, None) - - - # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}ProdDist uses Python identifier ProdDist - __ProdDist = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'ProdDist'), 'ProdDist', '__httppacificbiosciences_comPacBioDatasets_xsd_CTD_ANON_3_httppacificbiosciences_comPacBioDatasets_xsdProdDist', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 310, 16), ) - - - ProdDist = property(__ProdDist.value, __ProdDist.set, None, None) - - - # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}ReadTypeDist uses Python identifier ReadTypeDist - __ReadTypeDist = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'ReadTypeDist'), 'ReadTypeDist', '__httppacificbiosciences_comPacBioDatasets_xsd_CTD_ANON_3_httppacificbiosciences_comPacBioDatasets_xsdReadTypeDist', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 311, 16), ) - - - ReadTypeDist = property(__ReadTypeDist.value, __ReadTypeDist.set, None, None) - - - # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}ReadLenDist uses Python identifier ReadLenDist - __ReadLenDist = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'ReadLenDist'), 'ReadLenDist', '__httppacificbiosciences_comPacBioDatasets_xsd_CTD_ANON_3_httppacificbiosciences_comPacBioDatasets_xsdReadLenDist', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 312, 16), ) - - - ReadLenDist = property(__ReadLenDist.value, __ReadLenDist.set, None, None) - - - # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}ReadQualDist uses Python identifier ReadQualDist - __ReadQualDist = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'ReadQualDist'), 'ReadQualDist', '__httppacificbiosciences_comPacBioDatasets_xsd_CTD_ANON_3_httppacificbiosciences_comPacBioDatasets_xsdReadQualDist', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 313, 16), ) - - - ReadQualDist = property(__ReadQualDist.value, __ReadQualDist.set, None, None) - - - # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}ControlReadLenDist uses Python identifier ControlReadLenDist - __ControlReadLenDist = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'ControlReadLenDist'), 'ControlReadLenDist', '__httppacificbiosciences_comPacBioDatasets_xsd_CTD_ANON_3_httppacificbiosciences_comPacBioDatasets_xsdControlReadLenDist', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 314, 16), ) - - - ControlReadLenDist = property(__ControlReadLenDist.value, __ControlReadLenDist.set, None, None) - - - # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}ControlReadQualDist uses Python identifier ControlReadQualDist - __ControlReadQualDist = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'ControlReadQualDist'), 'ControlReadQualDist', '__httppacificbiosciences_comPacBioDatasets_xsd_CTD_ANON_3_httppacificbiosciences_comPacBioDatasets_xsdControlReadQualDist', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 315, 16), ) - - - ControlReadQualDist = property(__ControlReadQualDist.value, __ControlReadQualDist.set, None, None) - - - # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}MedianInsertDist uses Python identifier MedianInsertDist - __MedianInsertDist = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'MedianInsertDist'), 'MedianInsertDist', '__httppacificbiosciences_comPacBioDatasets_xsd_CTD_ANON_3_httppacificbiosciences_comPacBioDatasets_xsdMedianInsertDist', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 316, 16), ) - - - MedianInsertDist = property(__MedianInsertDist.value, __MedianInsertDist.set, None, None) - - - # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}InsertReadLenDist uses Python identifier InsertReadLenDist - __InsertReadLenDist = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'InsertReadLenDist'), 'InsertReadLenDist', '__httppacificbiosciences_comPacBioDatasets_xsd_CTD_ANON_3_httppacificbiosciences_comPacBioDatasets_xsdInsertReadLenDist', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 317, 16), ) - - - InsertReadLenDist = property(__InsertReadLenDist.value, __InsertReadLenDist.set, None, None) - - - # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}InsertReadQualDist uses Python identifier InsertReadQualDist - __InsertReadQualDist = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'InsertReadQualDist'), 'InsertReadQualDist', '__httppacificbiosciences_comPacBioDatasets_xsd_CTD_ANON_3_httppacificbiosciences_comPacBioDatasets_xsdInsertReadQualDist', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 318, 16), ) - - - InsertReadQualDist = property(__InsertReadQualDist.value, __InsertReadQualDist.set, None, None) - - _ElementMap.update({ - __AdapterDimerFraction.name() : __AdapterDimerFraction, - __ShortInsertFraction.name() : __ShortInsertFraction, - __NumSequencingZmws.name() : __NumSequencingZmws, - __ProdDist.name() : __ProdDist, - __ReadTypeDist.name() : __ReadTypeDist, - __ReadLenDist.name() : __ReadLenDist, - __ReadQualDist.name() : __ReadQualDist, - __ControlReadLenDist.name() : __ControlReadLenDist, - __ControlReadQualDist.name() : __ControlReadQualDist, - __MedianInsertDist.name() : __MedianInsertDist, - __InsertReadLenDist.name() : __InsertReadLenDist, - __InsertReadQualDist.name() : __InsertReadQualDist - }) - _AttributeMap.update({ - - }) -_module_typeBindings.CTD_ANON_3 = CTD_ANON_3 - - -# Complex type [anonymous] with content type ELEMENT_ONLY -class CTD_ANON_4 (pyxb.binding.basis.complexTypeDefinition): - """The set of filters defined here apply to the resident data set. Should DataSet subsets be created out of this parent DataSet, each sub-DataSet may contain its own filters.""" - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = None - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 361, 12) - _ElementMap = {} - _AttributeMap = {} - # Base type is pyxb.binding.datatypes.anyType - - # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}Filter uses Python identifier Filter - __Filter = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Filter'), 'Filter', '__httppacificbiosciences_comPacBioDatasets_xsd_CTD_ANON_4_httppacificbiosciences_comPacBioDatasets_xsdFilter', True, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 363, 16), ) - - - Filter = property(__Filter.value, __Filter.set, None, None) - - _ElementMap.update({ - __Filter.name() : __Filter - }) - _AttributeMap.update({ - - }) -_module_typeBindings.CTD_ANON_4 = CTD_ANON_4 - - -# Complex type {http://pacificbiosciences.com/PacBioDatasets.xsd}AlignmentSetMetadataType with content type ELEMENT_ONLY -class AlignmentSetMetadataType (DataSetMetadataType): - """Complex type {http://pacificbiosciences.com/PacBioDatasets.xsd}AlignmentSetMetadataType with content type ELEMENT_ONLY""" - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'AlignmentSetMetadataType') - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 147, 2) - _ElementMap = DataSetMetadataType._ElementMap.copy() - _AttributeMap = DataSetMetadataType._AttributeMap.copy() - # Base type is DataSetMetadataType - - # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}Aligner uses Python identifier Aligner - __Aligner = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Aligner'), 'Aligner', '__httppacificbiosciences_comPacBioDatasets_xsd_AlignmentSetMetadataType_httppacificbiosciences_comPacBioDatasets_xsdAligner', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 151, 10), ) - - - Aligner = property(__Aligner.value, __Aligner.set, None, None) - - - # Element TotalLength ({http://pacificbiosciences.com/PacBioDatasets.xsd}TotalLength) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetMetadataType - - # Element NumRecords ({http://pacificbiosciences.com/PacBioDatasets.xsd}NumRecords) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetMetadataType - - # Element Provenance ({http://pacificbiosciences.com/PacBioDatasets.xsd}Provenance) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetMetadataType - _ElementMap.update({ - __Aligner.name() : __Aligner - }) - _AttributeMap.update({ - - }) -_module_typeBindings.AlignmentSetMetadataType = AlignmentSetMetadataType -Namespace.addCategoryObject('typeBinding', 'AlignmentSetMetadataType', AlignmentSetMetadataType) - - -# Complex type {http://pacificbiosciences.com/PacBioDatasets.xsd}TranscriptSetMetadataType with content type ELEMENT_ONLY -class TranscriptSetMetadataType (DataSetMetadataType): - """Complex type {http://pacificbiosciences.com/PacBioDatasets.xsd}TranscriptSetMetadataType with content type ELEMENT_ONLY""" - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'TranscriptSetMetadataType') - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 180, 2) - _ElementMap = DataSetMetadataType._ElementMap.copy() - _AttributeMap = DataSetMetadataType._AttributeMap.copy() - # Base type is DataSetMetadataType - - # Element TotalLength ({http://pacificbiosciences.com/PacBioDatasets.xsd}TotalLength) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetMetadataType - - # Element NumRecords ({http://pacificbiosciences.com/PacBioDatasets.xsd}NumRecords) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetMetadataType - - # Element Provenance ({http://pacificbiosciences.com/PacBioDatasets.xsd}Provenance) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetMetadataType - _ElementMap.update({ - - }) - _AttributeMap.update({ - - }) -_module_typeBindings.TranscriptSetMetadataType = TranscriptSetMetadataType -Namespace.addCategoryObject('typeBinding', 'TranscriptSetMetadataType', TranscriptSetMetadataType) - - -# Complex type {http://pacificbiosciences.com/PacBioDatasets.xsd}BarcodeSetMetadataType with content type ELEMENT_ONLY -class BarcodeSetMetadataType (DataSetMetadataType): - """Complex type {http://pacificbiosciences.com/PacBioDatasets.xsd}BarcodeSetMetadataType with content type ELEMENT_ONLY""" - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'BarcodeSetMetadataType') - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 185, 2) - _ElementMap = DataSetMetadataType._ElementMap.copy() - _AttributeMap = DataSetMetadataType._AttributeMap.copy() - # Base type is DataSetMetadataType - - # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}BarcodeConstruction uses Python identifier BarcodeConstruction - __BarcodeConstruction = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'BarcodeConstruction'), 'BarcodeConstruction', '__httppacificbiosciences_comPacBioDatasets_xsd_BarcodeSetMetadataType_httppacificbiosciences_comPacBioDatasets_xsdBarcodeConstruction', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 189, 10), ) - - - BarcodeConstruction = property(__BarcodeConstruction.value, __BarcodeConstruction.set, None, None) - - - # Element TotalLength ({http://pacificbiosciences.com/PacBioDatasets.xsd}TotalLength) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetMetadataType - - # Element NumRecords ({http://pacificbiosciences.com/PacBioDatasets.xsd}NumRecords) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetMetadataType - - # Element Provenance ({http://pacificbiosciences.com/PacBioDatasets.xsd}Provenance) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetMetadataType - _ElementMap.update({ - __BarcodeConstruction.name() : __BarcodeConstruction - }) - _AttributeMap.update({ - - }) -_module_typeBindings.BarcodeSetMetadataType = BarcodeSetMetadataType -Namespace.addCategoryObject('typeBinding', 'BarcodeSetMetadataType', BarcodeSetMetadataType) - - -# Complex type {http://pacificbiosciences.com/PacBioDatasets.xsd}ContigSetMetadataType with content type ELEMENT_ONLY -class ContigSetMetadataType (DataSetMetadataType): - """Complex type {http://pacificbiosciences.com/PacBioDatasets.xsd}ContigSetMetadataType with content type ELEMENT_ONLY""" - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'ContigSetMetadataType') - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 206, 2) - _ElementMap = DataSetMetadataType._ElementMap.copy() - _AttributeMap = DataSetMetadataType._AttributeMap.copy() - # Base type is DataSetMetadataType - - # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}Contigs uses Python identifier Contigs - __Contigs = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Contigs'), 'Contigs', '__httppacificbiosciences_comPacBioDatasets_xsd_ContigSetMetadataType_httppacificbiosciences_comPacBioDatasets_xsdContigs', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 68, 2), ) - - - Contigs = property(__Contigs.value, __Contigs.set, None, 'DEPRECATED List of contigs in a ContigSet; optional and will be removed in the future') - - - # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}Organism uses Python identifier Organism - __Organism = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Organism'), 'Organism', '__httppacificbiosciences_comPacBioDatasets_xsd_ContigSetMetadataType_httppacificbiosciences_comPacBioDatasets_xsdOrganism', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 210, 10), ) - - - Organism = property(__Organism.value, __Organism.set, None, None) - - - # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}Ploidy uses Python identifier Ploidy - __Ploidy = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Ploidy'), 'Ploidy', '__httppacificbiosciences_comPacBioDatasets_xsd_ContigSetMetadataType_httppacificbiosciences_comPacBioDatasets_xsdPloidy', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 211, 10), ) - - - Ploidy = property(__Ploidy.value, __Ploidy.set, None, None) - - - # Element TotalLength ({http://pacificbiosciences.com/PacBioDatasets.xsd}TotalLength) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetMetadataType - - # Element NumRecords ({http://pacificbiosciences.com/PacBioDatasets.xsd}NumRecords) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetMetadataType - - # Element Provenance ({http://pacificbiosciences.com/PacBioDatasets.xsd}Provenance) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetMetadataType - _ElementMap.update({ - __Contigs.name() : __Contigs, - __Organism.name() : __Organism, - __Ploidy.name() : __Ploidy - }) - _AttributeMap.update({ - - }) -_module_typeBindings.ContigSetMetadataType = ContigSetMetadataType -Namespace.addCategoryObject('typeBinding', 'ContigSetMetadataType', ContigSetMetadataType) - - -# Complex type [anonymous] with content type ELEMENT_ONLY -class CTD_ANON_5 (pyxb.binding.basis.complexTypeDefinition): - """Complex type [anonymous] with content type ELEMENT_ONLY""" - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = None - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 237, 8) - _ElementMap = {} - _AttributeMap = {} - # Base type is pyxb.binding.datatypes.anyType - - # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}CommonServicesInstanceId uses Python identifier CommonServicesInstanceId - __CommonServicesInstanceId = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'CommonServicesInstanceId'), 'CommonServicesInstanceId', '__httppacificbiosciences_comPacBioDatasets_xsd_CTD_ANON_5_httppacificbiosciences_comPacBioDatasets_xsdCommonServicesInstanceId', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 239, 12), ) - - - CommonServicesInstanceId = property(__CommonServicesInstanceId.value, __CommonServicesInstanceId.set, None, None) - - - # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}CreatorUserId uses Python identifier CreatorUserId - __CreatorUserId = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'CreatorUserId'), 'CreatorUserId', '__httppacificbiosciences_comPacBioDatasets_xsd_CTD_ANON_5_httppacificbiosciences_comPacBioDatasets_xsdCreatorUserId', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 240, 12), ) - - - CreatorUserId = property(__CreatorUserId.value, __CreatorUserId.set, None, None) - - - # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}ParentJobId uses Python identifier ParentJobId - __ParentJobId = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'ParentJobId'), 'ParentJobId', '__httppacificbiosciences_comPacBioDatasets_xsd_CTD_ANON_5_httppacificbiosciences_comPacBioDatasets_xsdParentJobId', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 241, 12), ) - - - ParentJobId = property(__ParentJobId.value, __ParentJobId.set, None, None) - - - # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}ParentTool uses Python identifier ParentTool - __ParentTool = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'ParentTool'), 'ParentTool', '__httppacificbiosciences_comPacBioDatasets_xsd_CTD_ANON_5_httppacificbiosciences_comPacBioDatasets_xsdParentTool', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 242, 12), ) - - - ParentTool = property(__ParentTool.value, __ParentTool.set, None, None) - - - # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}ParentDataSet uses Python identifier ParentDataSet - __ParentDataSet = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'ParentDataSet'), 'ParentDataSet', '__httppacificbiosciences_comPacBioDatasets_xsd_CTD_ANON_5_httppacificbiosciences_comPacBioDatasets_xsdParentDataSet', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 243, 12), ) - - - ParentDataSet = property(__ParentDataSet.value, __ParentDataSet.set, None, None) - - - # Attribute CreatedBy uses Python identifier CreatedBy - __CreatedBy = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'CreatedBy'), 'CreatedBy', '__httppacificbiosciences_comPacBioDatasets_xsd_CTD_ANON_5_CreatedBy', _module_typeBindings.STD_ANON, required=True) - __CreatedBy._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 245, 10) - __CreatedBy._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 245, 10) - - CreatedBy = property(__CreatedBy.value, __CreatedBy.set, None, None) - - _ElementMap.update({ - __CommonServicesInstanceId.name() : __CommonServicesInstanceId, - __CreatorUserId.name() : __CreatorUserId, - __ParentJobId.name() : __ParentJobId, - __ParentTool.name() : __ParentTool, - __ParentDataSet.name() : __ParentDataSet - }) - _AttributeMap.update({ - __CreatedBy.name() : __CreatedBy - }) -_module_typeBindings.CTD_ANON_5 = CTD_ANON_5 - - -# Complex type {http://pacificbiosciences.com/PacBioDatasets.xsd}ReadSetMetadataType with content type ELEMENT_ONLY -class ReadSetMetadataType (DataSetMetadataType): - """Complex type {http://pacificbiosciences.com/PacBioDatasets.xsd}ReadSetMetadataType with content type ELEMENT_ONLY""" - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'ReadSetMetadataType') - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 298, 2) - _ElementMap = DataSetMetadataType._ElementMap.copy() - _AttributeMap = DataSetMetadataType._AttributeMap.copy() - # Base type is DataSetMetadataType - - # Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}Collections uses Python identifier Collections - __Collections = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(_Namespace_pbmeta, 'Collections'), 'Collections', '__httppacificbiosciences_comPacBioDatasets_xsd_ReadSetMetadataType_httppacificbiosciences_comPacBioCollectionMetadata_xsdCollections', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 20, 2), ) - - - Collections = property(__Collections.value, __Collections.set, None, 'A set of acquisition definitions') - - - # Element TotalLength ({http://pacificbiosciences.com/PacBioDatasets.xsd}TotalLength) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetMetadataType - - # Element NumRecords ({http://pacificbiosciences.com/PacBioDatasets.xsd}NumRecords) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetMetadataType - - # Element Provenance ({http://pacificbiosciences.com/PacBioDatasets.xsd}Provenance) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetMetadataType - - # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}SummaryStats uses Python identifier SummaryStats - __SummaryStats = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'SummaryStats'), 'SummaryStats', '__httppacificbiosciences_comPacBioDatasets_xsd_ReadSetMetadataType_httppacificbiosciences_comPacBioDatasets_xsdSummaryStats', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 304, 10), ) - - - SummaryStats = property(__SummaryStats.value, __SummaryStats.set, None, None) - - - # Element {http://pacificbiosciences.com/PacBioSampleInfo.xsd}BioSamples uses Python identifier BioSamples - __BioSamples = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(_Namespace_pbsample, 'BioSamples'), 'BioSamples', '__httppacificbiosciences_comPacBioDatasets_xsd_ReadSetMetadataType_httppacificbiosciences_comPacBioSampleInfo_xsdBioSamples', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioSampleInfo.xsd', 126, 2), ) - - - BioSamples = property(__BioSamples.value, __BioSamples.set, None, 'List of biological samples.') - - _ElementMap.update({ - __Collections.name() : __Collections, - __SummaryStats.name() : __SummaryStats, - __BioSamples.name() : __BioSamples - }) - _AttributeMap.update({ - - }) -_module_typeBindings.ReadSetMetadataType = ReadSetMetadataType -Namespace.addCategoryObject('typeBinding', 'ReadSetMetadataType', ReadSetMetadataType) - - -# Complex type {http://pacificbiosciences.com/PacBioDatasets.xsd}SubreadSetMetadataType with content type ELEMENT_ONLY -class SubreadSetMetadataType (DataSetMetadataType): - """Complex type {http://pacificbiosciences.com/PacBioDatasets.xsd}SubreadSetMetadataType with content type ELEMENT_ONLY""" - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'SubreadSetMetadataType') - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 338, 2) - _ElementMap = DataSetMetadataType._ElementMap.copy() - _AttributeMap = DataSetMetadataType._AttributeMap.copy() - # Base type is DataSetMetadataType - - # Element TotalLength ({http://pacificbiosciences.com/PacBioDatasets.xsd}TotalLength) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetMetadataType - - # Element NumRecords ({http://pacificbiosciences.com/PacBioDatasets.xsd}NumRecords) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetMetadataType - - # Element Provenance ({http://pacificbiosciences.com/PacBioDatasets.xsd}Provenance) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetMetadataType - - # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}AverageSubreadLength uses Python identifier AverageSubreadLength - __AverageSubreadLength = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'AverageSubreadLength'), 'AverageSubreadLength', '__httppacificbiosciences_comPacBioDatasets_xsd_SubreadSetMetadataType_httppacificbiosciences_comPacBioDatasets_xsdAverageSubreadLength', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 342, 10), ) - - - AverageSubreadLength = property(__AverageSubreadLength.value, __AverageSubreadLength.set, None, None) - - - # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}AverageSubreadQuality uses Python identifier AverageSubreadQuality - __AverageSubreadQuality = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'AverageSubreadQuality'), 'AverageSubreadQuality', '__httppacificbiosciences_comPacBioDatasets_xsd_SubreadSetMetadataType_httppacificbiosciences_comPacBioDatasets_xsdAverageSubreadQuality', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 343, 10), ) - - - AverageSubreadQuality = property(__AverageSubreadQuality.value, __AverageSubreadQuality.set, None, None) - - _ElementMap.update({ - __AverageSubreadLength.name() : __AverageSubreadLength, - __AverageSubreadQuality.name() : __AverageSubreadQuality - }) - _AttributeMap.update({ - - }) -_module_typeBindings.SubreadSetMetadataType = SubreadSetMetadataType -Namespace.addCategoryObject('typeBinding', 'SubreadSetMetadataType', SubreadSetMetadataType) - - -# Complex type [anonymous] with content type ELEMENT_ONLY -class CTD_ANON_6 (_ImportedBinding__pbbase.BaseEntityType): - """DEPRECATED List of contigs in a ContigSet; optional and will be removed in the future""" - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = None - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 72, 4) - _ElementMap = _ImportedBinding__pbbase.BaseEntityType._ElementMap.copy() - _AttributeMap = _ImportedBinding__pbbase.BaseEntityType._AttributeMap.copy() - # Base type is _ImportedBinding__pbbase.BaseEntityType - - # Element Extensions ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Extensions) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}Contig uses Python identifier Contig - __Contig = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Contig'), 'Contig', '__httppacificbiosciences_comPacBioDatasets_xsd_CTD_ANON_6_httppacificbiosciences_comPacBioDatasets_xsdContig', True, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 76, 12), ) - - - Contig = property(__Contig.value, __Contig.set, None, None) - - - # Attribute Name inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Description inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Tags inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Format inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ResourceId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Version inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute CreatedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ModifiedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - _ElementMap.update({ - __Contig.name() : __Contig - }) - _AttributeMap.update({ - - }) -_module_typeBindings.CTD_ANON_6 = CTD_ANON_6 - - -# Complex type [anonymous] with content type ELEMENT_ONLY -class CTD_ANON_7 (_ImportedBinding__pbbase.BaseEntityType): - """Complex type [anonymous] with content type ELEMENT_ONLY""" - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = None - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 77, 14) - _ElementMap = _ImportedBinding__pbbase.BaseEntityType._ElementMap.copy() - _AttributeMap = _ImportedBinding__pbbase.BaseEntityType._AttributeMap.copy() - # Base type is _ImportedBinding__pbbase.BaseEntityType - - # Element Extensions ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Extensions) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Name inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Description inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Tags inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Format inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ResourceId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Version inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute CreatedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ModifiedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Length uses Python identifier Length - __Length = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'Length'), 'Length', '__httppacificbiosciences_comPacBioDatasets_xsd_CTD_ANON_7_Length', pyxb.binding.datatypes.anySimpleType, required=True) - __Length._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 80, 20) - __Length._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 80, 20) - - Length = property(__Length.value, __Length.set, None, None) - - - # Attribute Digest uses Python identifier Digest - __Digest = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'Digest'), 'Digest', '__httppacificbiosciences_comPacBioDatasets_xsd_CTD_ANON_7_Digest', pyxb.binding.datatypes.anySimpleType, required=True) - __Digest._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 81, 20) - __Digest._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 81, 20) - - Digest = property(__Digest.value, __Digest.set, None, None) - - _ElementMap.update({ - - }) - _AttributeMap.update({ - __Length.name() : __Length, - __Digest.name() : __Digest - }) -_module_typeBindings.CTD_ANON_7 = CTD_ANON_7 - - -# Complex type {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType with content type ELEMENT_ONLY -class DataSetType (_ImportedBinding__pbbase.StrictEntityType): - """Complex type {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType with content type ELEMENT_ONLY""" - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'DataSetType') - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 272, 2) - _ElementMap = _ImportedBinding__pbbase.StrictEntityType._ElementMap.copy() - _AttributeMap = _ImportedBinding__pbbase.StrictEntityType._AttributeMap.copy() - # Base type is _ImportedBinding__pbbase.StrictEntityType - - # Element Extensions ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Extensions) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}ExternalResources uses Python identifier ExternalResources - __ExternalResources = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'ExternalResources'), 'ExternalResources', '__httppacificbiosciences_comPacBioDatasets_xsd_DataSetType_httppacificbiosciences_comPacBioBaseDataModel_xsdExternalResources', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 280, 2), ) - - - ExternalResources = property(__ExternalResources.value, __ExternalResources.set, None, 'Pointers to data that do not reside inside the parent structure') - - - # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}Filters uses Python identifier Filters - __Filters = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Filters'), 'Filters', '__httppacificbiosciences_comPacBioDatasets_xsd_DataSetType_httppacificbiosciences_comPacBioDatasets_xsdFilters', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 277, 10), ) - - - Filters = property(__Filters.value, __Filters.set, None, 'The set of filters defined here apply to the resident data set. Should DataSet subsets be created out of this parent DataSet, each sub-DataSet may contain its own filters.') - - - # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSets uses Python identifier DataSets - __DataSets = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'DataSets'), 'DataSets', '__httppacificbiosciences_comPacBioDatasets_xsd_DataSetType_httppacificbiosciences_comPacBioDatasets_xsdDataSets', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 287, 10), ) - - - DataSets = property(__DataSets.value, __DataSets.set, None, None) - - - # Attribute Name inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Description inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Tags inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Format inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ResourceId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Version inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute CreatedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ModifiedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute UniqueId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType - - # Attribute MetaType inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType - - # Attribute TimeStampedName inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType - _ElementMap.update({ - __ExternalResources.name() : __ExternalResources, - __Filters.name() : __Filters, - __DataSets.name() : __DataSets - }) - _AttributeMap.update({ - - }) -_module_typeBindings.DataSetType = DataSetType -Namespace.addCategoryObject('typeBinding', 'DataSetType', DataSetType) - - -# Complex type {http://pacificbiosciences.com/PacBioDatasets.xsd}SubsetType with content type ELEMENT_ONLY -class SubsetType (_ImportedBinding__pbbase.StrictEntityType): - """Complex type {http://pacificbiosciences.com/PacBioDatasets.xsd}SubsetType with content type ELEMENT_ONLY""" - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'SubsetType') - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 353, 2) - _ElementMap = _ImportedBinding__pbbase.StrictEntityType._ElementMap.copy() - _AttributeMap = _ImportedBinding__pbbase.StrictEntityType._AttributeMap.copy() - # Base type is _ImportedBinding__pbbase.StrictEntityType - - # Element Extensions ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Extensions) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}DataPointers uses Python identifier DataPointers - __DataPointers = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'DataPointers'), 'DataPointers', '__httppacificbiosciences_comPacBioDatasets_xsd_SubsetType_httppacificbiosciences_comPacBioBaseDataModel_xsdDataPointers', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 235, 2), ) - - - DataPointers = property(__DataPointers.value, __DataPointers.set, None, 'Pointer list to UniqueIds in the system') - - - # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}Filters uses Python identifier Filters - __Filters = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Filters'), 'Filters', '__httppacificbiosciences_comPacBioDatasets_xsd_SubsetType_httppacificbiosciences_comPacBioDatasets_xsdFilters', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 357, 10), ) - - - Filters = property(__Filters.value, __Filters.set, None, 'The set of filters defined here apply to the resident data set. Should DataSet subsets be created out of this parent DataSet, each sub-DataSet may contain its own filters.') - - - # Attribute Name inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Description inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Tags inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Format inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ResourceId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Version inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute CreatedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ModifiedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute UniqueId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType - - # Attribute MetaType inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType - - # Attribute TimeStampedName inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType - _ElementMap.update({ - __DataPointers.name() : __DataPointers, - __Filters.name() : __Filters - }) - _AttributeMap.update({ - - }) -_module_typeBindings.SubsetType = SubsetType -Namespace.addCategoryObject('typeBinding', 'SubsetType', SubsetType) - - -# Complex type {http://pacificbiosciences.com/PacBioDatasets.xsd}AlignmentSetType with content type ELEMENT_ONLY -class AlignmentSetType (DataSetType): - """Type for DataSets consisting of aligned subreads and CCS reads.""" - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'AlignmentSetType') - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 156, 2) - _ElementMap = DataSetType._ElementMap.copy() - _AttributeMap = DataSetType._AttributeMap.copy() - # Base type is DataSetType - - # Element Extensions ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Extensions) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Element ExternalResources ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}ExternalResources) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType - - # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetMetadata uses Python identifier DataSetMetadata - __DataSetMetadata = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'DataSetMetadata'), 'DataSetMetadata', '__httppacificbiosciences_comPacBioDatasets_xsd_AlignmentSetType_httppacificbiosciences_comPacBioDatasets_xsdDataSetMetadata', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 163, 10), ) - - - DataSetMetadata = property(__DataSetMetadata.value, __DataSetMetadata.set, None, None) - - - # Element Filters ({http://pacificbiosciences.com/PacBioDatasets.xsd}Filters) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType - - # Element DataSets ({http://pacificbiosciences.com/PacBioDatasets.xsd}DataSets) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType - - # Attribute Name inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Description inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Tags inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Format inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ResourceId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Version inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute CreatedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ModifiedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute UniqueId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType - - # Attribute MetaType inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType - - # Attribute TimeStampedName inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType - _ElementMap.update({ - __DataSetMetadata.name() : __DataSetMetadata - }) - _AttributeMap.update({ - - }) -_module_typeBindings.AlignmentSetType = AlignmentSetType -Namespace.addCategoryObject('typeBinding', 'AlignmentSetType', AlignmentSetType) - - -# Complex type {http://pacificbiosciences.com/PacBioDatasets.xsd}TranscriptSetType with content type ELEMENT_ONLY -class TranscriptSetType (DataSetType): - """Type for DataSets containing processed RNA transcripts""" - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'TranscriptSetType') - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 168, 2) - _ElementMap = DataSetType._ElementMap.copy() - _AttributeMap = DataSetType._AttributeMap.copy() - # Base type is DataSetType - - # Element Extensions ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Extensions) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Element ExternalResources ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}ExternalResources) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType - - # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetMetadata uses Python identifier DataSetMetadata - __DataSetMetadata = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'DataSetMetadata'), 'DataSetMetadata', '__httppacificbiosciences_comPacBioDatasets_xsd_TranscriptSetType_httppacificbiosciences_comPacBioDatasets_xsdDataSetMetadata', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 175, 10), ) - - - DataSetMetadata = property(__DataSetMetadata.value, __DataSetMetadata.set, None, None) - - - # Element Filters ({http://pacificbiosciences.com/PacBioDatasets.xsd}Filters) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType - - # Element DataSets ({http://pacificbiosciences.com/PacBioDatasets.xsd}DataSets) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType - - # Attribute Name inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Description inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Tags inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Format inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ResourceId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Version inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute CreatedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ModifiedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute UniqueId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType - - # Attribute MetaType inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType - - # Attribute TimeStampedName inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType - _ElementMap.update({ - __DataSetMetadata.name() : __DataSetMetadata - }) - _AttributeMap.update({ - - }) -_module_typeBindings.TranscriptSetType = TranscriptSetType -Namespace.addCategoryObject('typeBinding', 'TranscriptSetType', TranscriptSetType) - - -# Complex type {http://pacificbiosciences.com/PacBioDatasets.xsd}BarcodeSetType with content type ELEMENT_ONLY -class BarcodeSetType (DataSetType): - """Type for the Barcode DataSet.""" - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'BarcodeSetType') - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 194, 2) - _ElementMap = DataSetType._ElementMap.copy() - _AttributeMap = DataSetType._AttributeMap.copy() - # Base type is DataSetType - - # Element Extensions ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Extensions) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Element ExternalResources ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}ExternalResources) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType - - # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetMetadata uses Python identifier DataSetMetadata - __DataSetMetadata = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'DataSetMetadata'), 'DataSetMetadata', '__httppacificbiosciences_comPacBioDatasets_xsd_BarcodeSetType_httppacificbiosciences_comPacBioDatasets_xsdDataSetMetadata', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 201, 10), ) - - - DataSetMetadata = property(__DataSetMetadata.value, __DataSetMetadata.set, None, None) - - - # Element Filters ({http://pacificbiosciences.com/PacBioDatasets.xsd}Filters) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType - - # Element DataSets ({http://pacificbiosciences.com/PacBioDatasets.xsd}DataSets) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType - - # Attribute Name inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Description inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Tags inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Format inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ResourceId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Version inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute CreatedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ModifiedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute UniqueId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType - - # Attribute MetaType inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType - - # Attribute TimeStampedName inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType - _ElementMap.update({ - __DataSetMetadata.name() : __DataSetMetadata - }) - _AttributeMap.update({ - - }) -_module_typeBindings.BarcodeSetType = BarcodeSetType -Namespace.addCategoryObject('typeBinding', 'BarcodeSetType', BarcodeSetType) - - -# Complex type {http://pacificbiosciences.com/PacBioDatasets.xsd}ContigSetType with content type ELEMENT_ONLY -class ContigSetType (DataSetType): - """Type for a Contig DataSet.""" - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'ContigSetType') - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 217, 2) - _ElementMap = DataSetType._ElementMap.copy() - _AttributeMap = DataSetType._AttributeMap.copy() - # Base type is DataSetType - - # Element Extensions ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Extensions) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Element ExternalResources ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}ExternalResources) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType - - # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetMetadata uses Python identifier DataSetMetadata - __DataSetMetadata = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'DataSetMetadata'), 'DataSetMetadata', '__httppacificbiosciences_comPacBioDatasets_xsd_ContigSetType_httppacificbiosciences_comPacBioDatasets_xsdDataSetMetadata', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 224, 10), ) - - - DataSetMetadata = property(__DataSetMetadata.value, __DataSetMetadata.set, None, None) - - - # Element Filters ({http://pacificbiosciences.com/PacBioDatasets.xsd}Filters) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType - - # Element DataSets ({http://pacificbiosciences.com/PacBioDatasets.xsd}DataSets) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType - - # Attribute Name inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Description inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Tags inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Format inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ResourceId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Version inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute CreatedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ModifiedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute UniqueId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType - - # Attribute MetaType inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType - - # Attribute TimeStampedName inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType - _ElementMap.update({ - __DataSetMetadata.name() : __DataSetMetadata - }) - _AttributeMap.update({ - - }) -_module_typeBindings.ContigSetType = ContigSetType -Namespace.addCategoryObject('typeBinding', 'ContigSetType', ContigSetType) - - -# Complex type {http://pacificbiosciences.com/PacBioDatasets.xsd}ReadSetType with content type ELEMENT_ONLY -class ReadSetType (DataSetType): - """Type for DataSets consisting of unaligned subreads and CCS reads DataSets""" - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'ReadSetType') - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 326, 2) - _ElementMap = DataSetType._ElementMap.copy() - _AttributeMap = DataSetType._AttributeMap.copy() - # Base type is DataSetType - - # Element Extensions ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Extensions) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Element ExternalResources ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}ExternalResources) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType - - # Element Filters ({http://pacificbiosciences.com/PacBioDatasets.xsd}Filters) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType - - # Element DataSets ({http://pacificbiosciences.com/PacBioDatasets.xsd}DataSets) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType - - # Element {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetMetadata uses Python identifier DataSetMetadata - __DataSetMetadata = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'DataSetMetadata'), 'DataSetMetadata', '__httppacificbiosciences_comPacBioDatasets_xsd_ReadSetType_httppacificbiosciences_comPacBioDatasets_xsdDataSetMetadata', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 333, 10), ) - - - DataSetMetadata = property(__DataSetMetadata.value, __DataSetMetadata.set, None, None) - - - # Attribute Name inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Description inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Tags inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Format inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ResourceId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Version inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute CreatedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ModifiedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute UniqueId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType - - # Attribute MetaType inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType - - # Attribute TimeStampedName inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType - _ElementMap.update({ - __DataSetMetadata.name() : __DataSetMetadata - }) - _AttributeMap.update({ - - }) -_module_typeBindings.ReadSetType = ReadSetType -Namespace.addCategoryObject('typeBinding', 'ReadSetType', ReadSetType) - - -# Complex type [anonymous] with content type ELEMENT_ONLY -class CTD_ANON_8 (AlignmentSetType): - """DataSets for aligned subreads and CCS reads.""" - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = None - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 12, 4) - _ElementMap = AlignmentSetType._ElementMap.copy() - _AttributeMap = AlignmentSetType._AttributeMap.copy() - # Base type is AlignmentSetType - - # Element Extensions ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Extensions) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Element ExternalResources ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}ExternalResources) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType - - # Element DataSetMetadata ({http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetMetadata) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}AlignmentSetType - - # Element Filters ({http://pacificbiosciences.com/PacBioDatasets.xsd}Filters) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType - - # Element DataSets ({http://pacificbiosciences.com/PacBioDatasets.xsd}DataSets) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType - - # Attribute Name inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Description inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Tags inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Format inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ResourceId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Version inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute CreatedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ModifiedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute UniqueId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType - - # Attribute MetaType inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType - - # Attribute TimeStampedName inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType - _ElementMap.update({ - - }) - _AttributeMap.update({ - - }) -_module_typeBindings.CTD_ANON_8 = CTD_ANON_8 - - -# Complex type [anonymous] with content type ELEMENT_ONLY -class CTD_ANON_9 (BarcodeSetType): - """DataSets of Barcodes. Basically a thin metadata layer on top of the barcode FASTA.""" - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = None - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 22, 4) - _ElementMap = BarcodeSetType._ElementMap.copy() - _AttributeMap = BarcodeSetType._AttributeMap.copy() - # Base type is BarcodeSetType - - # Element Extensions ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Extensions) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Element ExternalResources ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}ExternalResources) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType - - # Element DataSetMetadata ({http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetMetadata) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}BarcodeSetType - - # Element Filters ({http://pacificbiosciences.com/PacBioDatasets.xsd}Filters) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType - - # Element DataSets ({http://pacificbiosciences.com/PacBioDatasets.xsd}DataSets) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType - - # Attribute Name inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Description inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Tags inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Format inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ResourceId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Version inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute CreatedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ModifiedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute UniqueId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType - - # Attribute MetaType inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType - - # Attribute TimeStampedName inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType - _ElementMap.update({ - - }) - _AttributeMap.update({ - - }) -_module_typeBindings.CTD_ANON_9 = CTD_ANON_9 - - -# Complex type [anonymous] with content type ELEMENT_ONLY -class CTD_ANON_10 (AlignmentSetType): - """DataSets of aligned CCS reads.""" - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = None - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 32, 4) - _ElementMap = AlignmentSetType._ElementMap.copy() - _AttributeMap = AlignmentSetType._AttributeMap.copy() - # Base type is AlignmentSetType - - # Element Extensions ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Extensions) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Element ExternalResources ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}ExternalResources) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType - - # Element DataSetMetadata ({http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetMetadata) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}AlignmentSetType - - # Element Filters ({http://pacificbiosciences.com/PacBioDatasets.xsd}Filters) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType - - # Element DataSets ({http://pacificbiosciences.com/PacBioDatasets.xsd}DataSets) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType - - # Attribute Name inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Description inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Tags inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Format inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ResourceId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Version inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute CreatedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ModifiedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute UniqueId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType - - # Attribute MetaType inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType - - # Attribute TimeStampedName inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType - _ElementMap.update({ - - }) - _AttributeMap.update({ - - }) -_module_typeBindings.CTD_ANON_10 = CTD_ANON_10 - - -# Complex type [anonymous] with content type ELEMENT_ONLY -class CTD_ANON_11 (AlignmentSetType): - """DataSets of aligned RNA transcripts.""" - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = None - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 42, 4) - _ElementMap = AlignmentSetType._ElementMap.copy() - _AttributeMap = AlignmentSetType._AttributeMap.copy() - # Base type is AlignmentSetType - - # Element Extensions ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Extensions) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Element ExternalResources ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}ExternalResources) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType - - # Element DataSetMetadata ({http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetMetadata) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}AlignmentSetType - - # Element Filters ({http://pacificbiosciences.com/PacBioDatasets.xsd}Filters) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType - - # Element DataSets ({http://pacificbiosciences.com/PacBioDatasets.xsd}DataSets) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType - - # Attribute Name inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Description inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Tags inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Format inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ResourceId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Version inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute CreatedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ModifiedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute UniqueId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType - - # Attribute MetaType inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType - - # Attribute TimeStampedName inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType - _ElementMap.update({ - - }) - _AttributeMap.update({ - - }) -_module_typeBindings.CTD_ANON_11 = CTD_ANON_11 - - -# Complex type [anonymous] with content type ELEMENT_ONLY -class CTD_ANON_12 (ReadSetType): - """DataSets of CCS reads (typically in unaligned BAM format).""" - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = None - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 52, 4) - _ElementMap = ReadSetType._ElementMap.copy() - _AttributeMap = ReadSetType._AttributeMap.copy() - # Base type is ReadSetType - - # Element Extensions ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Extensions) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Element ExternalResources ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}ExternalResources) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType - - # Element Filters ({http://pacificbiosciences.com/PacBioDatasets.xsd}Filters) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType - - # Element DataSets ({http://pacificbiosciences.com/PacBioDatasets.xsd}DataSets) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType - - # Element DataSetMetadata ({http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetMetadata) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}ReadSetType - - # Attribute Name inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Description inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Tags inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Format inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ResourceId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Version inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute CreatedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ModifiedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute UniqueId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType - - # Attribute MetaType inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType - - # Attribute TimeStampedName inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType - _ElementMap.update({ - - }) - _AttributeMap.update({ - - }) -_module_typeBindings.CTD_ANON_12 = CTD_ANON_12 - - -# Complex type [anonymous] with content type ELEMENT_ONLY -class CTD_ANON_13 (TranscriptSetType): - """DataSet for processed Iso-Seq transcripts.""" - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = None - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 62, 4) - _ElementMap = TranscriptSetType._ElementMap.copy() - _AttributeMap = TranscriptSetType._AttributeMap.copy() - # Base type is TranscriptSetType - - # Element Extensions ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Extensions) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Element ExternalResources ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}ExternalResources) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType - - # Element DataSetMetadata ({http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetMetadata) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}TranscriptSetType - - # Element Filters ({http://pacificbiosciences.com/PacBioDatasets.xsd}Filters) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType - - # Element DataSets ({http://pacificbiosciences.com/PacBioDatasets.xsd}DataSets) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType - - # Attribute Name inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Description inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Tags inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Format inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ResourceId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Version inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute CreatedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ModifiedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute UniqueId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType - - # Attribute MetaType inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType - - # Attribute TimeStampedName inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType - _ElementMap.update({ - - }) - _AttributeMap.update({ - - }) -_module_typeBindings.CTD_ANON_13 = CTD_ANON_13 - - -# Complex type [anonymous] with content type ELEMENT_ONLY -class CTD_ANON_14 (ContigSetType): - """DataSets of contigs sequences. Basically a thin metadata layer on top of a contigs FASTA (e.g. from HGAP).""" - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = None - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 95, 4) - _ElementMap = ContigSetType._ElementMap.copy() - _AttributeMap = ContigSetType._AttributeMap.copy() - # Base type is ContigSetType - - # Element Extensions ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Extensions) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Element ExternalResources ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}ExternalResources) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType - - # Element DataSetMetadata ({http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetMetadata) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}ContigSetType - - # Element Filters ({http://pacificbiosciences.com/PacBioDatasets.xsd}Filters) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType - - # Element DataSets ({http://pacificbiosciences.com/PacBioDatasets.xsd}DataSets) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType - - # Attribute Name inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Description inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Tags inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Format inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ResourceId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Version inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute CreatedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ModifiedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute UniqueId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType - - # Attribute MetaType inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType - - # Attribute TimeStampedName inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType - _ElementMap.update({ - - }) - _AttributeMap.update({ - - }) -_module_typeBindings.CTD_ANON_14 = CTD_ANON_14 - - -# Complex type [anonymous] with content type ELEMENT_ONLY -class CTD_ANON_15 (ReadSetType): - """DataSets of subreads in bax.h5 or bas.h5 format.""" - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = None - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 107, 4) - _ElementMap = ReadSetType._ElementMap.copy() - _AttributeMap = ReadSetType._AttributeMap.copy() - # Base type is ReadSetType - - # Element Extensions ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Extensions) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Element ExternalResources ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}ExternalResources) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType - - # Element Filters ({http://pacificbiosciences.com/PacBioDatasets.xsd}Filters) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType - - # Element DataSets ({http://pacificbiosciences.com/PacBioDatasets.xsd}DataSets) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType - - # Element DataSetMetadata ({http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetMetadata) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}ReadSetType - - # Attribute Name inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Description inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Tags inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Format inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ResourceId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Version inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute CreatedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ModifiedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute UniqueId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType - - # Attribute MetaType inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType - - # Attribute TimeStampedName inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType - _ElementMap.update({ - - }) - _AttributeMap.update({ - - }) -_module_typeBindings.CTD_ANON_15 = CTD_ANON_15 - - -# Complex type [anonymous] with content type ELEMENT_ONLY -class CTD_ANON_16 (ContigSetType): - """DataSets of reference sequences. Replaces the reference.info.xml.""" - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = None - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 117, 4) - _ElementMap = ContigSetType._ElementMap.copy() - _AttributeMap = ContigSetType._AttributeMap.copy() - # Base type is ContigSetType - - # Element Extensions ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Extensions) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Element ExternalResources ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}ExternalResources) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType - - # Element DataSetMetadata ({http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetMetadata) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}ContigSetType - - # Element Filters ({http://pacificbiosciences.com/PacBioDatasets.xsd}Filters) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType - - # Element DataSets ({http://pacificbiosciences.com/PacBioDatasets.xsd}DataSets) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType - - # Attribute Name inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Description inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Tags inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Format inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ResourceId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Version inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute CreatedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ModifiedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute UniqueId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType - - # Attribute MetaType inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType - - # Attribute TimeStampedName inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType - _ElementMap.update({ - - }) - _AttributeMap.update({ - - }) -_module_typeBindings.CTD_ANON_16 = CTD_ANON_16 - - -# Complex type [anonymous] with content type ELEMENT_ONLY -class CTD_ANON_17 (ContigSetType): - """DataSets of reference sequences, with GMAP indices.""" - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = None - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 127, 4) - _ElementMap = ContigSetType._ElementMap.copy() - _AttributeMap = ContigSetType._AttributeMap.copy() - # Base type is ContigSetType - - # Element Extensions ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Extensions) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Element ExternalResources ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}ExternalResources) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType - - # Element DataSetMetadata ({http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetMetadata) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}ContigSetType - - # Element Filters ({http://pacificbiosciences.com/PacBioDatasets.xsd}Filters) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType - - # Element DataSets ({http://pacificbiosciences.com/PacBioDatasets.xsd}DataSets) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType - - # Attribute Name inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Description inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Tags inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Format inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ResourceId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Version inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute CreatedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ModifiedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute UniqueId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType - - # Attribute MetaType inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType - - # Attribute TimeStampedName inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType - _ElementMap.update({ - - }) - _AttributeMap.update({ - - }) -_module_typeBindings.CTD_ANON_17 = CTD_ANON_17 - - -# Complex type {http://pacificbiosciences.com/PacBioDatasets.xsd}SubreadSetType with content type ELEMENT_ONLY -class SubreadSetType (ReadSetType): - """Complex type {http://pacificbiosciences.com/PacBioDatasets.xsd}SubreadSetType with content type ELEMENT_ONLY""" - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'SubreadSetType') - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 348, 2) - _ElementMap = ReadSetType._ElementMap.copy() - _AttributeMap = ReadSetType._AttributeMap.copy() - # Base type is ReadSetType - - # Element Extensions ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Extensions) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Element ExternalResources ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}ExternalResources) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType - - # Element Filters ({http://pacificbiosciences.com/PacBioDatasets.xsd}Filters) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType - - # Element DataSets ({http://pacificbiosciences.com/PacBioDatasets.xsd}DataSets) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType - - # Element DataSetMetadata ({http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetMetadata) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}ReadSetType - - # Attribute Name inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Description inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Tags inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Format inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ResourceId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Version inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute CreatedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ModifiedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute UniqueId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType - - # Attribute MetaType inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType - - # Attribute TimeStampedName inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType - _ElementMap.update({ - - }) - _AttributeMap.update({ - - }) -_module_typeBindings.SubreadSetType = SubreadSetType -Namespace.addCategoryObject('typeBinding', 'SubreadSetType', SubreadSetType) - - -# Complex type [anonymous] with content type ELEMENT_ONLY -class CTD_ANON_18 (SubreadSetType): - """Complex type [anonymous] with content type ELEMENT_ONLY""" - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = None - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 134, 4) - _ElementMap = SubreadSetType._ElementMap.copy() - _AttributeMap = SubreadSetType._AttributeMap.copy() - # Base type is SubreadSetType - - # Element Extensions ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Extensions) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Element ExternalResources ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}ExternalResources) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType - - # Element Filters ({http://pacificbiosciences.com/PacBioDatasets.xsd}Filters) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType - - # Element DataSets ({http://pacificbiosciences.com/PacBioDatasets.xsd}DataSets) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetType - - # Element DataSetMetadata ({http://pacificbiosciences.com/PacBioDatasets.xsd}DataSetMetadata) inherited from {http://pacificbiosciences.com/PacBioDatasets.xsd}ReadSetType - - # Attribute Name inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Description inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Tags inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Format inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ResourceId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Version inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute CreatedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ModifiedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute UniqueId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType - - # Attribute MetaType inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType - - # Attribute TimeStampedName inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType - _ElementMap.update({ - - }) - _AttributeMap.update({ - - }) -_module_typeBindings.CTD_ANON_18 = CTD_ANON_18 - - -DataSetRoot = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'DataSetRoot'), DataSetRootType, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 102, 2)) -Namespace.addCategoryObject('elementBinding', DataSetRoot.name().localName(), DataSetRoot) - -Subsets = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Subsets'), CTD_ANON, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 140, 2)) -Namespace.addCategoryObject('elementBinding', Subsets.name().localName(), Subsets) - -Contigs = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Contigs'), CTD_ANON_6, documentation='DEPRECATED List of contigs in a ContigSet; optional and will be removed in the future', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 68, 2)) -Namespace.addCategoryObject('elementBinding', Contigs.name().localName(), Contigs) - -DataSet = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'DataSet'), DataSetType, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 101, 2)) -Namespace.addCategoryObject('elementBinding', DataSet.name().localName(), DataSet) - -AlignmentSet = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'AlignmentSet'), CTD_ANON_8, documentation='DataSets for aligned subreads and CCS reads.', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 8, 2)) -Namespace.addCategoryObject('elementBinding', AlignmentSet.name().localName(), AlignmentSet) - -BarcodeSet = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'BarcodeSet'), CTD_ANON_9, documentation='DataSets of Barcodes. Basically a thin metadata layer on top of the barcode FASTA.', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 18, 2)) -Namespace.addCategoryObject('elementBinding', BarcodeSet.name().localName(), BarcodeSet) - -ConsensusAlignmentSet = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ConsensusAlignmentSet'), CTD_ANON_10, documentation='DataSets of aligned CCS reads.', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 28, 2)) -Namespace.addCategoryObject('elementBinding', ConsensusAlignmentSet.name().localName(), ConsensusAlignmentSet) - -TranscriptAlignmentSet = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'TranscriptAlignmentSet'), CTD_ANON_11, documentation='DataSets of aligned RNA transcripts.', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 38, 2)) -Namespace.addCategoryObject('elementBinding', TranscriptAlignmentSet.name().localName(), TranscriptAlignmentSet) - -ConsensusReadSet = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ConsensusReadSet'), CTD_ANON_12, documentation='DataSets of CCS reads (typically in unaligned BAM format).', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 48, 2)) -Namespace.addCategoryObject('elementBinding', ConsensusReadSet.name().localName(), ConsensusReadSet) - -TranscriptSet = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'TranscriptSet'), CTD_ANON_13, documentation='DataSet for processed Iso-Seq transcripts.', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 58, 2)) -Namespace.addCategoryObject('elementBinding', TranscriptSet.name().localName(), TranscriptSet) - -ContigSet = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ContigSet'), CTD_ANON_14, documentation='DataSets of contigs sequences. Basically a thin metadata layer on top of a contigs FASTA (e.g. from HGAP).', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 91, 2)) -Namespace.addCategoryObject('elementBinding', ContigSet.name().localName(), ContigSet) - -HdfSubreadSet = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'HdfSubreadSet'), CTD_ANON_15, documentation='DataSets of subreads in bax.h5 or bas.h5 format.', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 103, 2)) -Namespace.addCategoryObject('elementBinding', HdfSubreadSet.name().localName(), HdfSubreadSet) - -ReferenceSet = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ReferenceSet'), CTD_ANON_16, documentation='DataSets of reference sequences. Replaces the reference.info.xml.', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 113, 2)) -Namespace.addCategoryObject('elementBinding', ReferenceSet.name().localName(), ReferenceSet) - -GmapReferenceSet = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'GmapReferenceSet'), CTD_ANON_17, documentation='DataSets of reference sequences, with GMAP indices.', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 123, 2)) -Namespace.addCategoryObject('elementBinding', GmapReferenceSet.name().localName(), GmapReferenceSet) - -SubreadSet = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'SubreadSet'), CTD_ANON_18, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 133, 2)) -Namespace.addCategoryObject('elementBinding', SubreadSet.name().localName(), SubreadSet) - - - -CTD_ANON._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Subset'), SubsetType, scope=CTD_ANON, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 143, 8))) - -def _BuildAutomaton (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton - del _BuildAutomaton - import pyxb.utils.fac as fac - - counters = set() - states = [] - final_update = set() - symbol = pyxb.binding.content.ElementUse(CTD_ANON._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Subset')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 143, 8)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - transitions = [] - transitions.append(fac.Transition(st_0, [ - ])) - st_0._set_transitionSet(transitions) - return fac.Automaton(states, counters, False, containing_state=None) -CTD_ANON._Automaton = _BuildAutomaton() - - - - -DataSetMetadataType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'TotalLength'), pyxb.binding.datatypes.long, scope=DataSetMetadataType, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 234, 6))) - -DataSetMetadataType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'NumRecords'), pyxb.binding.datatypes.int, scope=DataSetMetadataType, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 235, 6))) - -DataSetMetadataType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Provenance'), CTD_ANON_5, scope=DataSetMetadataType, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 236, 6))) - -def _BuildAutomaton_ (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_ - del _BuildAutomaton_ - import pyxb.utils.fac as fac - - counters = set() - cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 236, 6)) - counters.add(cc_0) - states = [] - final_update = None - symbol = pyxb.binding.content.ElementUse(DataSetMetadataType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'TotalLength')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 234, 6)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - final_update = set() - symbol = pyxb.binding.content.ElementUse(DataSetMetadataType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'NumRecords')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 235, 6)) - st_1 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_1) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_0, False)) - symbol = pyxb.binding.content.ElementUse(DataSetMetadataType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Provenance')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 236, 6)) - st_2 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_2) - transitions = [] - transitions.append(fac.Transition(st_1, [ - ])) - st_0._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_2, [ - ])) - st_1._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_2, [ - fac.UpdateInstruction(cc_0, True) ])) - st_2._set_transitionSet(transitions) - return fac.Automaton(states, counters, False, containing_state=None) -DataSetMetadataType._Automaton = _BuildAutomaton_() - - - - -DataSetRootType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'AlignmentSet'), CTD_ANON_8, scope=DataSetRootType, documentation='DataSets for aligned subreads and CCS reads.', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 8, 2))) - -DataSetRootType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'BarcodeSet'), CTD_ANON_9, scope=DataSetRootType, documentation='DataSets of Barcodes. Basically a thin metadata layer on top of the barcode FASTA.', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 18, 2))) - -DataSetRootType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ConsensusAlignmentSet'), CTD_ANON_10, scope=DataSetRootType, documentation='DataSets of aligned CCS reads.', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 28, 2))) - -DataSetRootType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'TranscriptAlignmentSet'), CTD_ANON_11, scope=DataSetRootType, documentation='DataSets of aligned RNA transcripts.', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 38, 2))) - -DataSetRootType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ConsensusReadSet'), CTD_ANON_12, scope=DataSetRootType, documentation='DataSets of CCS reads (typically in unaligned BAM format).', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 48, 2))) - -DataSetRootType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'TranscriptSet'), CTD_ANON_13, scope=DataSetRootType, documentation='DataSet for processed Iso-Seq transcripts.', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 58, 2))) - -DataSetRootType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ContigSet'), CTD_ANON_14, scope=DataSetRootType, documentation='DataSets of contigs sequences. Basically a thin metadata layer on top of a contigs FASTA (e.g. from HGAP).', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 91, 2))) - -DataSetRootType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'HdfSubreadSet'), CTD_ANON_15, scope=DataSetRootType, documentation='DataSets of subreads in bax.h5 or bas.h5 format.', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 103, 2))) - -DataSetRootType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ReferenceSet'), CTD_ANON_16, scope=DataSetRootType, documentation='DataSets of reference sequences. Replaces the reference.info.xml.', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 113, 2))) - -DataSetRootType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'SubreadSet'), CTD_ANON_18, scope=DataSetRootType, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 133, 2))) - -def _BuildAutomaton_2 (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_2 - del _BuildAutomaton_2 - import pyxb.utils.fac as fac - - counters = set() - cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 260, 6)) - counters.add(cc_0) - cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 261, 6)) - counters.add(cc_1) - cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 262, 6)) - counters.add(cc_2) - cc_3 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 263, 6)) - counters.add(cc_3) - cc_4 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 264, 6)) - counters.add(cc_4) - cc_5 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 265, 6)) - counters.add(cc_5) - cc_6 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 266, 6)) - counters.add(cc_6) - cc_7 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 267, 6)) - counters.add(cc_7) - cc_8 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 268, 6)) - counters.add(cc_8) - cc_9 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 269, 6)) - counters.add(cc_9) - states = [] - final_update = set() - final_update.add(fac.UpdateInstruction(cc_0, False)) - symbol = pyxb.binding.content.ElementUse(DataSetRootType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'AlignmentSet')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 260, 6)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_1, False)) - symbol = pyxb.binding.content.ElementUse(DataSetRootType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'BarcodeSet')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 261, 6)) - st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_1) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_2, False)) - symbol = pyxb.binding.content.ElementUse(DataSetRootType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'ConsensusAlignmentSet')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 262, 6)) - st_2 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_2) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_3, False)) - symbol = pyxb.binding.content.ElementUse(DataSetRootType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'ConsensusReadSet')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 263, 6)) - st_3 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_3) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_4, False)) - symbol = pyxb.binding.content.ElementUse(DataSetRootType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'ContigSet')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 264, 6)) - st_4 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_4) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_5, False)) - symbol = pyxb.binding.content.ElementUse(DataSetRootType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'HdfSubreadSet')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 265, 6)) - st_5 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_5) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_6, False)) - symbol = pyxb.binding.content.ElementUse(DataSetRootType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'ReferenceSet')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 266, 6)) - st_6 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_6) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_7, False)) - symbol = pyxb.binding.content.ElementUse(DataSetRootType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'SubreadSet')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 267, 6)) - st_7 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_7) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_8, False)) - symbol = pyxb.binding.content.ElementUse(DataSetRootType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'TranscriptSet')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 268, 6)) - st_8 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_8) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_9, False)) - symbol = pyxb.binding.content.ElementUse(DataSetRootType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'TranscriptAlignmentSet')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 269, 6)) - st_9 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_9) - transitions = [] - transitions.append(fac.Transition(st_0, [ - fac.UpdateInstruction(cc_0, True) ])) - st_0._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_1, [ - fac.UpdateInstruction(cc_1, True) ])) - st_1._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_2, [ - fac.UpdateInstruction(cc_2, True) ])) - st_2._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_3, [ - fac.UpdateInstruction(cc_3, True) ])) - st_3._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_4, [ - fac.UpdateInstruction(cc_4, True) ])) - st_4._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_5, [ - fac.UpdateInstruction(cc_5, True) ])) - st_5._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_6, [ - fac.UpdateInstruction(cc_6, True) ])) - st_6._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_7, [ - fac.UpdateInstruction(cc_7, True) ])) - st_7._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_8, [ - fac.UpdateInstruction(cc_8, True) ])) - st_8._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_9, [ - fac.UpdateInstruction(cc_9, True) ])) - st_9._set_transitionSet(transitions) - return fac.Automaton(states, counters, True, containing_state=None) -DataSetRootType._Automaton = _BuildAutomaton_2() - - - - -CTD_ANON_._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Filter'), _ImportedBinding__pbbase.FilterType, scope=CTD_ANON_, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 283, 16))) - -def _BuildAutomaton_3 (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_3 - del _BuildAutomaton_3 - import pyxb.utils.fac as fac - - counters = set() - states = [] - final_update = set() - symbol = pyxb.binding.content.ElementUse(CTD_ANON_._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Filter')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 283, 16)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - transitions = [] - transitions.append(fac.Transition(st_0, [ - ])) - st_0._set_transitionSet(transitions) - return fac.Automaton(states, counters, False, containing_state=None) -CTD_ANON_._Automaton = _BuildAutomaton_3() - - - - -CTD_ANON_2._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'DataSet'), DataSetType, scope=CTD_ANON_2, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 101, 2))) - -def _BuildAutomaton_4 (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_4 - del _BuildAutomaton_4 - import pyxb.utils.fac as fac - - counters = set() - cc_0 = fac.CounterCondition(min=0, max=None, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 290, 16)) - counters.add(cc_0) - states = [] - final_update = set() - final_update.add(fac.UpdateInstruction(cc_0, False)) - symbol = pyxb.binding.content.ElementUse(CTD_ANON_2._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DataSet')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 290, 16)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - transitions = [] - transitions.append(fac.Transition(st_0, [ - fac.UpdateInstruction(cc_0, True) ])) - st_0._set_transitionSet(transitions) - return fac.Automaton(states, counters, True, containing_state=None) -CTD_ANON_2._Automaton = _BuildAutomaton_4() - - - - -CTD_ANON_3._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'AdapterDimerFraction'), pyxb.binding.datatypes.float, scope=CTD_ANON_3, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 307, 16))) - -CTD_ANON_3._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ShortInsertFraction'), pyxb.binding.datatypes.float, scope=CTD_ANON_3, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 308, 16))) - -CTD_ANON_3._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'NumSequencingZmws'), pyxb.binding.datatypes.int, scope=CTD_ANON_3, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 309, 16))) - -CTD_ANON_3._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ProdDist'), _ImportedBinding__pbbase.StatsDiscreteDistType, scope=CTD_ANON_3, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 310, 16))) - -CTD_ANON_3._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ReadTypeDist'), _ImportedBinding__pbbase.StatsDiscreteDistType, scope=CTD_ANON_3, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 311, 16))) - -CTD_ANON_3._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ReadLenDist'), _ImportedBinding__pbbase.StatsContinuousDistType, scope=CTD_ANON_3, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 312, 16))) - -CTD_ANON_3._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ReadQualDist'), _ImportedBinding__pbbase.StatsContinuousDistType, scope=CTD_ANON_3, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 313, 16))) - -CTD_ANON_3._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ControlReadLenDist'), _ImportedBinding__pbbase.StatsContinuousDistType, scope=CTD_ANON_3, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 314, 16))) - -CTD_ANON_3._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ControlReadQualDist'), _ImportedBinding__pbbase.StatsContinuousDistType, scope=CTD_ANON_3, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 315, 16))) - -CTD_ANON_3._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'MedianInsertDist'), _ImportedBinding__pbbase.StatsContinuousDistType, scope=CTD_ANON_3, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 316, 16))) - -CTD_ANON_3._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'InsertReadLenDist'), _ImportedBinding__pbbase.StatsContinuousDistType, scope=CTD_ANON_3, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 317, 16))) - -CTD_ANON_3._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'InsertReadQualDist'), _ImportedBinding__pbbase.StatsContinuousDistType, scope=CTD_ANON_3, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 318, 16))) - -def _BuildAutomaton_5 (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_5 - del _BuildAutomaton_5 - import pyxb.utils.fac as fac - - counters = set() - states = [] - final_update = None - symbol = pyxb.binding.content.ElementUse(CTD_ANON_3._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'AdapterDimerFraction')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 307, 16)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - final_update = None - symbol = pyxb.binding.content.ElementUse(CTD_ANON_3._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'ShortInsertFraction')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 308, 16)) - st_1 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_1) - final_update = None - symbol = pyxb.binding.content.ElementUse(CTD_ANON_3._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'NumSequencingZmws')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 309, 16)) - st_2 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_2) - final_update = None - symbol = pyxb.binding.content.ElementUse(CTD_ANON_3._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'ProdDist')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 310, 16)) - st_3 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_3) - final_update = None - symbol = pyxb.binding.content.ElementUse(CTD_ANON_3._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'ReadTypeDist')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 311, 16)) - st_4 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_4) - final_update = None - symbol = pyxb.binding.content.ElementUse(CTD_ANON_3._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'ReadLenDist')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 312, 16)) - st_5 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_5) - final_update = None - symbol = pyxb.binding.content.ElementUse(CTD_ANON_3._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'ReadQualDist')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 313, 16)) - st_6 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_6) - final_update = None - symbol = pyxb.binding.content.ElementUse(CTD_ANON_3._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'ControlReadLenDist')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 314, 16)) - st_7 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_7) - final_update = None - symbol = pyxb.binding.content.ElementUse(CTD_ANON_3._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'ControlReadQualDist')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 315, 16)) - st_8 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_8) - final_update = None - symbol = pyxb.binding.content.ElementUse(CTD_ANON_3._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'MedianInsertDist')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 316, 16)) - st_9 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_9) - final_update = None - symbol = pyxb.binding.content.ElementUse(CTD_ANON_3._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'InsertReadLenDist')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 317, 16)) - st_10 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_10) - final_update = set() - symbol = pyxb.binding.content.ElementUse(CTD_ANON_3._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'InsertReadQualDist')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 318, 16)) - st_11 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_11) - transitions = [] - transitions.append(fac.Transition(st_1, [ - ])) - st_0._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_2, [ - ])) - st_1._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_3, [ - ])) - st_2._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_4, [ - ])) - st_3._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_5, [ - ])) - st_4._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_6, [ - ])) - st_5._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_7, [ - ])) - st_6._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_8, [ - ])) - st_7._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_9, [ - ])) - st_8._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_10, [ - ])) - st_9._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_11, [ - ])) - st_10._set_transitionSet(transitions) - transitions = [] - st_11._set_transitionSet(transitions) - return fac.Automaton(states, counters, False, containing_state=None) -CTD_ANON_3._Automaton = _BuildAutomaton_5() - - - - -CTD_ANON_4._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Filter'), _ImportedBinding__pbbase.FilterType, scope=CTD_ANON_4, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 363, 16))) - -def _BuildAutomaton_6 (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_6 - del _BuildAutomaton_6 - import pyxb.utils.fac as fac - - counters = set() - states = [] - final_update = set() - symbol = pyxb.binding.content.ElementUse(CTD_ANON_4._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Filter')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 363, 16)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - transitions = [] - transitions.append(fac.Transition(st_0, [ - ])) - st_0._set_transitionSet(transitions) - return fac.Automaton(states, counters, False, containing_state=None) -CTD_ANON_4._Automaton = _BuildAutomaton_6() - - - - -AlignmentSetMetadataType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Aligner'), pyxb.binding.datatypes.anyType, scope=AlignmentSetMetadataType, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 151, 10))) - -def _BuildAutomaton_7 (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_7 - del _BuildAutomaton_7 - import pyxb.utils.fac as fac - - counters = set() - cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 236, 6)) - counters.add(cc_0) - cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 151, 10)) - counters.add(cc_1) - states = [] - final_update = None - symbol = pyxb.binding.content.ElementUse(AlignmentSetMetadataType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'TotalLength')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 234, 6)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - final_update = set() - symbol = pyxb.binding.content.ElementUse(AlignmentSetMetadataType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'NumRecords')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 235, 6)) - st_1 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_1) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_0, False)) - symbol = pyxb.binding.content.ElementUse(AlignmentSetMetadataType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Provenance')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 236, 6)) - st_2 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_2) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_1, False)) - symbol = pyxb.binding.content.ElementUse(AlignmentSetMetadataType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Aligner')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 151, 10)) - st_3 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_3) - transitions = [] - transitions.append(fac.Transition(st_1, [ - ])) - st_0._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_2, [ - ])) - transitions.append(fac.Transition(st_3, [ - ])) - st_1._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_2, [ - fac.UpdateInstruction(cc_0, True) ])) - transitions.append(fac.Transition(st_3, [ - fac.UpdateInstruction(cc_0, False) ])) - st_2._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_3, [ - fac.UpdateInstruction(cc_1, True) ])) - st_3._set_transitionSet(transitions) - return fac.Automaton(states, counters, False, containing_state=None) -AlignmentSetMetadataType._Automaton = _BuildAutomaton_7() - - - - -def _BuildAutomaton_8 (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_8 - del _BuildAutomaton_8 - import pyxb.utils.fac as fac - - counters = set() - cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 236, 6)) - counters.add(cc_0) - states = [] - final_update = None - symbol = pyxb.binding.content.ElementUse(TranscriptSetMetadataType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'TotalLength')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 234, 6)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - final_update = set() - symbol = pyxb.binding.content.ElementUse(TranscriptSetMetadataType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'NumRecords')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 235, 6)) - st_1 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_1) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_0, False)) - symbol = pyxb.binding.content.ElementUse(TranscriptSetMetadataType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Provenance')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 236, 6)) - st_2 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_2) - transitions = [] - transitions.append(fac.Transition(st_1, [ - ])) - st_0._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_2, [ - ])) - st_1._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_2, [ - fac.UpdateInstruction(cc_0, True) ])) - st_2._set_transitionSet(transitions) - return fac.Automaton(states, counters, False, containing_state=None) -TranscriptSetMetadataType._Automaton = _BuildAutomaton_8() - - - - -BarcodeSetMetadataType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'BarcodeConstruction'), pyxb.binding.datatypes.string, scope=BarcodeSetMetadataType, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 189, 10))) - -def _BuildAutomaton_9 (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_9 - del _BuildAutomaton_9 - import pyxb.utils.fac as fac - - counters = set() - cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 236, 6)) - counters.add(cc_0) - states = [] - final_update = None - symbol = pyxb.binding.content.ElementUse(BarcodeSetMetadataType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'TotalLength')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 234, 6)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - final_update = None - symbol = pyxb.binding.content.ElementUse(BarcodeSetMetadataType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'NumRecords')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 235, 6)) - st_1 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_1) - final_update = None - symbol = pyxb.binding.content.ElementUse(BarcodeSetMetadataType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Provenance')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 236, 6)) - st_2 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_2) - final_update = set() - symbol = pyxb.binding.content.ElementUse(BarcodeSetMetadataType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'BarcodeConstruction')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 189, 10)) - st_3 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_3) - transitions = [] - transitions.append(fac.Transition(st_1, [ - ])) - st_0._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_2, [ - ])) - transitions.append(fac.Transition(st_3, [ - ])) - st_1._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_2, [ - fac.UpdateInstruction(cc_0, True) ])) - transitions.append(fac.Transition(st_3, [ - fac.UpdateInstruction(cc_0, False) ])) - st_2._set_transitionSet(transitions) - transitions = [] - st_3._set_transitionSet(transitions) - return fac.Automaton(states, counters, False, containing_state=None) -BarcodeSetMetadataType._Automaton = _BuildAutomaton_9() - - - - -ContigSetMetadataType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Contigs'), CTD_ANON_6, scope=ContigSetMetadataType, documentation='DEPRECATED List of contigs in a ContigSet; optional and will be removed in the future', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 68, 2))) - -ContigSetMetadataType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Organism'), pyxb.binding.datatypes.string, scope=ContigSetMetadataType, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 210, 10))) - -ContigSetMetadataType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Ploidy'), pyxb.binding.datatypes.string, scope=ContigSetMetadataType, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 211, 10))) - -def _BuildAutomaton_10 (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_10 - del _BuildAutomaton_10 - import pyxb.utils.fac as fac - - counters = set() - cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 236, 6)) - counters.add(cc_0) - cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 210, 10)) - counters.add(cc_1) - cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 211, 10)) - counters.add(cc_2) - cc_3 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 212, 10)) - counters.add(cc_3) - states = [] - final_update = None - symbol = pyxb.binding.content.ElementUse(ContigSetMetadataType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'TotalLength')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 234, 6)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - final_update = set() - symbol = pyxb.binding.content.ElementUse(ContigSetMetadataType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'NumRecords')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 235, 6)) - st_1 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_1) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_0, False)) - symbol = pyxb.binding.content.ElementUse(ContigSetMetadataType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Provenance')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 236, 6)) - st_2 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_2) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_1, False)) - symbol = pyxb.binding.content.ElementUse(ContigSetMetadataType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Organism')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 210, 10)) - st_3 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_3) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_2, False)) - symbol = pyxb.binding.content.ElementUse(ContigSetMetadataType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Ploidy')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 211, 10)) - st_4 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_4) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_3, False)) - symbol = pyxb.binding.content.ElementUse(ContigSetMetadataType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Contigs')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 212, 10)) - st_5 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_5) - transitions = [] - transitions.append(fac.Transition(st_1, [ - ])) - st_0._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_2, [ - ])) - transitions.append(fac.Transition(st_3, [ - ])) - transitions.append(fac.Transition(st_4, [ - ])) - transitions.append(fac.Transition(st_5, [ - ])) - st_1._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_2, [ - fac.UpdateInstruction(cc_0, True) ])) - transitions.append(fac.Transition(st_3, [ - fac.UpdateInstruction(cc_0, False) ])) - transitions.append(fac.Transition(st_4, [ - fac.UpdateInstruction(cc_0, False) ])) - transitions.append(fac.Transition(st_5, [ - fac.UpdateInstruction(cc_0, False) ])) - st_2._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_3, [ - fac.UpdateInstruction(cc_1, True) ])) - transitions.append(fac.Transition(st_4, [ - fac.UpdateInstruction(cc_1, False) ])) - transitions.append(fac.Transition(st_5, [ - fac.UpdateInstruction(cc_1, False) ])) - st_3._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_4, [ - fac.UpdateInstruction(cc_2, True) ])) - transitions.append(fac.Transition(st_5, [ - fac.UpdateInstruction(cc_2, False) ])) - st_4._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_5, [ - fac.UpdateInstruction(cc_3, True) ])) - st_5._set_transitionSet(transitions) - return fac.Automaton(states, counters, False, containing_state=None) -ContigSetMetadataType._Automaton = _BuildAutomaton_10() - - - - -CTD_ANON_5._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'CommonServicesInstanceId'), pyxb.binding.datatypes.IDREF, scope=CTD_ANON_5, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 239, 12))) - -CTD_ANON_5._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'CreatorUserId'), pyxb.binding.datatypes.IDREF, scope=CTD_ANON_5, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 240, 12))) - -CTD_ANON_5._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ParentJobId'), pyxb.binding.datatypes.IDREF, scope=CTD_ANON_5, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 241, 12))) - -CTD_ANON_5._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ParentTool'), _ImportedBinding__pbbase.BaseEntityType, scope=CTD_ANON_5, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 242, 12))) - -CTD_ANON_5._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ParentDataSet'), _ImportedBinding__pbbase.StrictEntityType, scope=CTD_ANON_5, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 243, 12))) - -def _BuildAutomaton_11 (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_11 - del _BuildAutomaton_11 - import pyxb.utils.fac as fac - - counters = set() - cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 239, 12)) - counters.add(cc_0) - cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 240, 12)) - counters.add(cc_1) - cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 241, 12)) - counters.add(cc_2) - cc_3 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 242, 12)) - counters.add(cc_3) - cc_4 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 243, 12)) - counters.add(cc_4) - states = [] - final_update = set() - final_update.add(fac.UpdateInstruction(cc_0, False)) - symbol = pyxb.binding.content.ElementUse(CTD_ANON_5._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'CommonServicesInstanceId')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 239, 12)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_1, False)) - symbol = pyxb.binding.content.ElementUse(CTD_ANON_5._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'CreatorUserId')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 240, 12)) - st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_1) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_2, False)) - symbol = pyxb.binding.content.ElementUse(CTD_ANON_5._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'ParentJobId')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 241, 12)) - st_2 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_2) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_3, False)) - symbol = pyxb.binding.content.ElementUse(CTD_ANON_5._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'ParentTool')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 242, 12)) - st_3 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_3) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_4, False)) - symbol = pyxb.binding.content.ElementUse(CTD_ANON_5._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'ParentDataSet')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 243, 12)) - st_4 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_4) - transitions = [] - transitions.append(fac.Transition(st_0, [ - fac.UpdateInstruction(cc_0, True) ])) - transitions.append(fac.Transition(st_1, [ - fac.UpdateInstruction(cc_0, False) ])) - transitions.append(fac.Transition(st_2, [ - fac.UpdateInstruction(cc_0, False) ])) - transitions.append(fac.Transition(st_3, [ - fac.UpdateInstruction(cc_0, False) ])) - transitions.append(fac.Transition(st_4, [ - fac.UpdateInstruction(cc_0, False) ])) - st_0._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_1, [ - fac.UpdateInstruction(cc_1, True) ])) - transitions.append(fac.Transition(st_2, [ - fac.UpdateInstruction(cc_1, False) ])) - transitions.append(fac.Transition(st_3, [ - fac.UpdateInstruction(cc_1, False) ])) - transitions.append(fac.Transition(st_4, [ - fac.UpdateInstruction(cc_1, False) ])) - st_1._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_2, [ - fac.UpdateInstruction(cc_2, True) ])) - transitions.append(fac.Transition(st_3, [ - fac.UpdateInstruction(cc_2, False) ])) - transitions.append(fac.Transition(st_4, [ - fac.UpdateInstruction(cc_2, False) ])) - st_2._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_3, [ - fac.UpdateInstruction(cc_3, True) ])) - transitions.append(fac.Transition(st_4, [ - fac.UpdateInstruction(cc_3, False) ])) - st_3._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_4, [ - fac.UpdateInstruction(cc_4, True) ])) - st_4._set_transitionSet(transitions) - return fac.Automaton(states, counters, True, containing_state=None) -CTD_ANON_5._Automaton = _BuildAutomaton_11() - - - - -ReadSetMetadataType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(_Namespace_pbmeta, 'Collections'), _ImportedBinding__pbmeta.CTD_ANON_, scope=ReadSetMetadataType, documentation='A set of acquisition definitions', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 20, 2))) - -ReadSetMetadataType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'SummaryStats'), CTD_ANON_3, scope=ReadSetMetadataType, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 304, 10))) - -ReadSetMetadataType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(_Namespace_pbsample, 'BioSamples'), _ImportedBinding__pbsample.CTD_ANON_2, scope=ReadSetMetadataType, documentation='List of biological samples.', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioSampleInfo.xsd', 126, 2))) - -def _BuildAutomaton_12 (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_12 - del _BuildAutomaton_12 - import pyxb.utils.fac as fac - - counters = set() - cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 236, 6)) - counters.add(cc_0) - cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 302, 10)) - counters.add(cc_1) - cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 303, 10)) - counters.add(cc_2) - cc_3 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 304, 10)) - counters.add(cc_3) - states = [] - final_update = None - symbol = pyxb.binding.content.ElementUse(ReadSetMetadataType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'TotalLength')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 234, 6)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - final_update = set() - symbol = pyxb.binding.content.ElementUse(ReadSetMetadataType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'NumRecords')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 235, 6)) - st_1 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_1) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_0, False)) - symbol = pyxb.binding.content.ElementUse(ReadSetMetadataType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Provenance')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 236, 6)) - st_2 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_2) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_1, False)) - symbol = pyxb.binding.content.ElementUse(ReadSetMetadataType._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbsample, 'BioSamples')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 302, 10)) - st_3 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_3) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_2, False)) - symbol = pyxb.binding.content.ElementUse(ReadSetMetadataType._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbmeta, 'Collections')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 303, 10)) - st_4 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_4) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_3, False)) - symbol = pyxb.binding.content.ElementUse(ReadSetMetadataType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'SummaryStats')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 304, 10)) - st_5 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_5) - transitions = [] - transitions.append(fac.Transition(st_1, [ - ])) - st_0._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_2, [ - ])) - transitions.append(fac.Transition(st_3, [ - ])) - transitions.append(fac.Transition(st_4, [ - ])) - transitions.append(fac.Transition(st_5, [ - ])) - st_1._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_2, [ - fac.UpdateInstruction(cc_0, True) ])) - transitions.append(fac.Transition(st_3, [ - fac.UpdateInstruction(cc_0, False) ])) - transitions.append(fac.Transition(st_4, [ - fac.UpdateInstruction(cc_0, False) ])) - transitions.append(fac.Transition(st_5, [ - fac.UpdateInstruction(cc_0, False) ])) - st_2._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_3, [ - fac.UpdateInstruction(cc_1, True) ])) - transitions.append(fac.Transition(st_4, [ - fac.UpdateInstruction(cc_1, False) ])) - transitions.append(fac.Transition(st_5, [ - fac.UpdateInstruction(cc_1, False) ])) - st_3._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_4, [ - fac.UpdateInstruction(cc_2, True) ])) - transitions.append(fac.Transition(st_5, [ - fac.UpdateInstruction(cc_2, False) ])) - st_4._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_5, [ - fac.UpdateInstruction(cc_3, True) ])) - st_5._set_transitionSet(transitions) - return fac.Automaton(states, counters, False, containing_state=None) -ReadSetMetadataType._Automaton = _BuildAutomaton_12() - - - - -SubreadSetMetadataType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'AverageSubreadLength'), pyxb.binding.datatypes.int, scope=SubreadSetMetadataType, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 342, 10))) - -SubreadSetMetadataType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'AverageSubreadQuality'), pyxb.binding.datatypes.float, scope=SubreadSetMetadataType, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 343, 10))) - -def _BuildAutomaton_13 (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_13 - del _BuildAutomaton_13 - import pyxb.utils.fac as fac - - counters = set() - cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 236, 6)) - counters.add(cc_0) - states = [] - final_update = None - symbol = pyxb.binding.content.ElementUse(SubreadSetMetadataType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'TotalLength')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 234, 6)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - final_update = None - symbol = pyxb.binding.content.ElementUse(SubreadSetMetadataType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'NumRecords')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 235, 6)) - st_1 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_1) - final_update = None - symbol = pyxb.binding.content.ElementUse(SubreadSetMetadataType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Provenance')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 236, 6)) - st_2 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_2) - final_update = None - symbol = pyxb.binding.content.ElementUse(SubreadSetMetadataType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'AverageSubreadLength')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 342, 10)) - st_3 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_3) - final_update = set() - symbol = pyxb.binding.content.ElementUse(SubreadSetMetadataType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'AverageSubreadQuality')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 343, 10)) - st_4 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_4) - transitions = [] - transitions.append(fac.Transition(st_1, [ - ])) - st_0._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_2, [ - ])) - transitions.append(fac.Transition(st_3, [ - ])) - st_1._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_2, [ - fac.UpdateInstruction(cc_0, True) ])) - transitions.append(fac.Transition(st_3, [ - fac.UpdateInstruction(cc_0, False) ])) - st_2._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_4, [ - ])) - st_3._set_transitionSet(transitions) - transitions = [] - st_4._set_transitionSet(transitions) - return fac.Automaton(states, counters, False, containing_state=None) -SubreadSetMetadataType._Automaton = _BuildAutomaton_13() - - - - -CTD_ANON_6._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Contig'), CTD_ANON_7, scope=CTD_ANON_6, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 76, 12))) - -def _BuildAutomaton_14 (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_14 - del _BuildAutomaton_14 - import pyxb.utils.fac as fac - - counters = set() - cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - counters.add(cc_0) - cc_1 = fac.CounterCondition(min=0, max=None, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 76, 12)) - counters.add(cc_1) - states = [] - final_update = set() - final_update.add(fac.UpdateInstruction(cc_0, False)) - symbol = pyxb.binding.content.ElementUse(CTD_ANON_6._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_1, False)) - symbol = pyxb.binding.content.ElementUse(CTD_ANON_6._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Contig')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 76, 12)) - st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_1) - transitions = [] - transitions.append(fac.Transition(st_0, [ - fac.UpdateInstruction(cc_0, True) ])) - transitions.append(fac.Transition(st_1, [ - fac.UpdateInstruction(cc_0, False) ])) - st_0._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_1, [ - fac.UpdateInstruction(cc_1, True) ])) - st_1._set_transitionSet(transitions) - return fac.Automaton(states, counters, True, containing_state=None) -CTD_ANON_6._Automaton = _BuildAutomaton_14() - - - - -def _BuildAutomaton_15 (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_15 - del _BuildAutomaton_15 - import pyxb.utils.fac as fac - - counters = set() - cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - counters.add(cc_0) - states = [] - final_update = set() - final_update.add(fac.UpdateInstruction(cc_0, False)) - symbol = pyxb.binding.content.ElementUse(CTD_ANON_7._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - transitions = [] - transitions.append(fac.Transition(st_0, [ - fac.UpdateInstruction(cc_0, True) ])) - st_0._set_transitionSet(transitions) - return fac.Automaton(states, counters, True, containing_state=None) -CTD_ANON_7._Automaton = _BuildAutomaton_15() - - - - -DataSetType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'ExternalResources'), _ImportedBinding__pbbase.CTD_ANON_4, scope=DataSetType, documentation='Pointers to data that do not reside inside the parent structure', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 280, 2))) - -DataSetType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Filters'), CTD_ANON_, scope=DataSetType, documentation='The set of filters defined here apply to the resident data set. Should DataSet subsets be created out of this parent DataSet, each sub-DataSet may contain its own filters.', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 277, 10))) - -DataSetType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'DataSets'), CTD_ANON_2, scope=DataSetType, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 287, 10))) - -def _BuildAutomaton_16 (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_16 - del _BuildAutomaton_16 - import pyxb.utils.fac as fac - - counters = set() - cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - counters.add(cc_0) - cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 277, 10)) - counters.add(cc_1) - cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 287, 10)) - counters.add(cc_2) - states = [] - final_update = None - symbol = pyxb.binding.content.ElementUse(DataSetType._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - final_update = set() - symbol = pyxb.binding.content.ElementUse(DataSetType._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'ExternalResources')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 276, 10)) - st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_1) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_1, False)) - symbol = pyxb.binding.content.ElementUse(DataSetType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Filters')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 277, 10)) - st_2 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_2) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_2, False)) - symbol = pyxb.binding.content.ElementUse(DataSetType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DataSets')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 287, 10)) - st_3 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_3) - transitions = [] - transitions.append(fac.Transition(st_0, [ - fac.UpdateInstruction(cc_0, True) ])) - transitions.append(fac.Transition(st_1, [ - fac.UpdateInstruction(cc_0, False) ])) - st_0._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_2, [ - ])) - transitions.append(fac.Transition(st_3, [ - ])) - st_1._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_2, [ - fac.UpdateInstruction(cc_1, True) ])) - transitions.append(fac.Transition(st_3, [ - fac.UpdateInstruction(cc_1, False) ])) - st_2._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_3, [ - fac.UpdateInstruction(cc_2, True) ])) - st_3._set_transitionSet(transitions) - return fac.Automaton(states, counters, False, containing_state=None) -DataSetType._Automaton = _BuildAutomaton_16() - - - - -SubsetType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'DataPointers'), _ImportedBinding__pbbase.CTD_ANON_3, scope=SubsetType, documentation='Pointer list to UniqueIds in the system', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 235, 2))) - -SubsetType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Filters'), CTD_ANON_4, scope=SubsetType, documentation='The set of filters defined here apply to the resident data set. Should DataSet subsets be created out of this parent DataSet, each sub-DataSet may contain its own filters.', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 357, 10))) - -def _BuildAutomaton_17 (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_17 - del _BuildAutomaton_17 - import pyxb.utils.fac as fac - - counters = set() - cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - counters.add(cc_0) - cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 357, 10)) - counters.add(cc_1) - cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 367, 10)) - counters.add(cc_2) - states = [] - final_update = set() - final_update.add(fac.UpdateInstruction(cc_0, False)) - symbol = pyxb.binding.content.ElementUse(SubsetType._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_1, False)) - symbol = pyxb.binding.content.ElementUse(SubsetType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Filters')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 357, 10)) - st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_1) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_2, False)) - symbol = pyxb.binding.content.ElementUse(SubsetType._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'DataPointers')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 367, 10)) - st_2 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_2) - transitions = [] - transitions.append(fac.Transition(st_0, [ - fac.UpdateInstruction(cc_0, True) ])) - transitions.append(fac.Transition(st_1, [ - fac.UpdateInstruction(cc_0, False) ])) - transitions.append(fac.Transition(st_2, [ - fac.UpdateInstruction(cc_0, False) ])) - st_0._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_1, [ - fac.UpdateInstruction(cc_1, True) ])) - transitions.append(fac.Transition(st_2, [ - fac.UpdateInstruction(cc_1, False) ])) - st_1._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_2, [ - fac.UpdateInstruction(cc_2, True) ])) - st_2._set_transitionSet(transitions) - return fac.Automaton(states, counters, True, containing_state=None) -SubsetType._Automaton = _BuildAutomaton_17() - - - - -AlignmentSetType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'DataSetMetadata'), AlignmentSetMetadataType, scope=AlignmentSetType, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 163, 10))) - -def _BuildAutomaton_18 (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_18 - del _BuildAutomaton_18 - import pyxb.utils.fac as fac - - counters = set() - cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - counters.add(cc_0) - cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 277, 10)) - counters.add(cc_1) - cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 287, 10)) - counters.add(cc_2) - cc_3 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 163, 10)) - counters.add(cc_3) - states = [] - final_update = None - symbol = pyxb.binding.content.ElementUse(AlignmentSetType._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - final_update = set() - symbol = pyxb.binding.content.ElementUse(AlignmentSetType._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'ExternalResources')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 276, 10)) - st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_1) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_1, False)) - symbol = pyxb.binding.content.ElementUse(AlignmentSetType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Filters')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 277, 10)) - st_2 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_2) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_2, False)) - symbol = pyxb.binding.content.ElementUse(AlignmentSetType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DataSets')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 287, 10)) - st_3 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_3) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_3, False)) - symbol = pyxb.binding.content.ElementUse(AlignmentSetType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DataSetMetadata')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 163, 10)) - st_4 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_4) - transitions = [] - transitions.append(fac.Transition(st_0, [ - fac.UpdateInstruction(cc_0, True) ])) - transitions.append(fac.Transition(st_1, [ - fac.UpdateInstruction(cc_0, False) ])) - st_0._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_2, [ - ])) - transitions.append(fac.Transition(st_3, [ - ])) - transitions.append(fac.Transition(st_4, [ - ])) - st_1._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_2, [ - fac.UpdateInstruction(cc_1, True) ])) - transitions.append(fac.Transition(st_3, [ - fac.UpdateInstruction(cc_1, False) ])) - transitions.append(fac.Transition(st_4, [ - fac.UpdateInstruction(cc_1, False) ])) - st_2._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_3, [ - fac.UpdateInstruction(cc_2, True) ])) - transitions.append(fac.Transition(st_4, [ - fac.UpdateInstruction(cc_2, False) ])) - st_3._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_4, [ - fac.UpdateInstruction(cc_3, True) ])) - st_4._set_transitionSet(transitions) - return fac.Automaton(states, counters, False, containing_state=None) -AlignmentSetType._Automaton = _BuildAutomaton_18() - - - - -TranscriptSetType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'DataSetMetadata'), TranscriptSetMetadataType, scope=TranscriptSetType, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 175, 10))) - -def _BuildAutomaton_19 (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_19 - del _BuildAutomaton_19 - import pyxb.utils.fac as fac - - counters = set() - cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - counters.add(cc_0) - cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 277, 10)) - counters.add(cc_1) - cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 287, 10)) - counters.add(cc_2) - cc_3 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 175, 10)) - counters.add(cc_3) - states = [] - final_update = None - symbol = pyxb.binding.content.ElementUse(TranscriptSetType._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - final_update = set() - symbol = pyxb.binding.content.ElementUse(TranscriptSetType._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'ExternalResources')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 276, 10)) - st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_1) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_1, False)) - symbol = pyxb.binding.content.ElementUse(TranscriptSetType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Filters')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 277, 10)) - st_2 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_2) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_2, False)) - symbol = pyxb.binding.content.ElementUse(TranscriptSetType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DataSets')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 287, 10)) - st_3 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_3) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_3, False)) - symbol = pyxb.binding.content.ElementUse(TranscriptSetType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DataSetMetadata')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 175, 10)) - st_4 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_4) - transitions = [] - transitions.append(fac.Transition(st_0, [ - fac.UpdateInstruction(cc_0, True) ])) - transitions.append(fac.Transition(st_1, [ - fac.UpdateInstruction(cc_0, False) ])) - st_0._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_2, [ - ])) - transitions.append(fac.Transition(st_3, [ - ])) - transitions.append(fac.Transition(st_4, [ - ])) - st_1._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_2, [ - fac.UpdateInstruction(cc_1, True) ])) - transitions.append(fac.Transition(st_3, [ - fac.UpdateInstruction(cc_1, False) ])) - transitions.append(fac.Transition(st_4, [ - fac.UpdateInstruction(cc_1, False) ])) - st_2._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_3, [ - fac.UpdateInstruction(cc_2, True) ])) - transitions.append(fac.Transition(st_4, [ - fac.UpdateInstruction(cc_2, False) ])) - st_3._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_4, [ - fac.UpdateInstruction(cc_3, True) ])) - st_4._set_transitionSet(transitions) - return fac.Automaton(states, counters, False, containing_state=None) -TranscriptSetType._Automaton = _BuildAutomaton_19() - - - - -BarcodeSetType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'DataSetMetadata'), BarcodeSetMetadataType, scope=BarcodeSetType, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 201, 10))) - -def _BuildAutomaton_20 (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_20 - del _BuildAutomaton_20 - import pyxb.utils.fac as fac - - counters = set() - cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - counters.add(cc_0) - cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 277, 10)) - counters.add(cc_1) - cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 287, 10)) - counters.add(cc_2) - states = [] - final_update = None - symbol = pyxb.binding.content.ElementUse(BarcodeSetType._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - final_update = None - symbol = pyxb.binding.content.ElementUse(BarcodeSetType._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'ExternalResources')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 276, 10)) - st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_1) - final_update = None - symbol = pyxb.binding.content.ElementUse(BarcodeSetType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Filters')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 277, 10)) - st_2 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_2) - final_update = None - symbol = pyxb.binding.content.ElementUse(BarcodeSetType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DataSets')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 287, 10)) - st_3 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_3) - final_update = set() - symbol = pyxb.binding.content.ElementUse(BarcodeSetType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DataSetMetadata')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 201, 10)) - st_4 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_4) - transitions = [] - transitions.append(fac.Transition(st_0, [ - fac.UpdateInstruction(cc_0, True) ])) - transitions.append(fac.Transition(st_1, [ - fac.UpdateInstruction(cc_0, False) ])) - st_0._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_2, [ - ])) - transitions.append(fac.Transition(st_3, [ - ])) - transitions.append(fac.Transition(st_4, [ - ])) - st_1._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_2, [ - fac.UpdateInstruction(cc_1, True) ])) - transitions.append(fac.Transition(st_3, [ - fac.UpdateInstruction(cc_1, False) ])) - transitions.append(fac.Transition(st_4, [ - fac.UpdateInstruction(cc_1, False) ])) - st_2._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_3, [ - fac.UpdateInstruction(cc_2, True) ])) - transitions.append(fac.Transition(st_4, [ - fac.UpdateInstruction(cc_2, False) ])) - st_3._set_transitionSet(transitions) - transitions = [] - st_4._set_transitionSet(transitions) - return fac.Automaton(states, counters, False, containing_state=None) -BarcodeSetType._Automaton = _BuildAutomaton_20() - - - - -ContigSetType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'DataSetMetadata'), ContigSetMetadataType, scope=ContigSetType, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 224, 10))) - -def _BuildAutomaton_21 (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_21 - del _BuildAutomaton_21 - import pyxb.utils.fac as fac - - counters = set() - cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - counters.add(cc_0) - cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 277, 10)) - counters.add(cc_1) - cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 287, 10)) - counters.add(cc_2) - states = [] - final_update = None - symbol = pyxb.binding.content.ElementUse(ContigSetType._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - final_update = None - symbol = pyxb.binding.content.ElementUse(ContigSetType._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'ExternalResources')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 276, 10)) - st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_1) - final_update = None - symbol = pyxb.binding.content.ElementUse(ContigSetType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Filters')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 277, 10)) - st_2 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_2) - final_update = None - symbol = pyxb.binding.content.ElementUse(ContigSetType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DataSets')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 287, 10)) - st_3 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_3) - final_update = set() - symbol = pyxb.binding.content.ElementUse(ContigSetType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DataSetMetadata')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 224, 10)) - st_4 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_4) - transitions = [] - transitions.append(fac.Transition(st_0, [ - fac.UpdateInstruction(cc_0, True) ])) - transitions.append(fac.Transition(st_1, [ - fac.UpdateInstruction(cc_0, False) ])) - st_0._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_2, [ - ])) - transitions.append(fac.Transition(st_3, [ - ])) - transitions.append(fac.Transition(st_4, [ - ])) - st_1._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_2, [ - fac.UpdateInstruction(cc_1, True) ])) - transitions.append(fac.Transition(st_3, [ - fac.UpdateInstruction(cc_1, False) ])) - transitions.append(fac.Transition(st_4, [ - fac.UpdateInstruction(cc_1, False) ])) - st_2._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_3, [ - fac.UpdateInstruction(cc_2, True) ])) - transitions.append(fac.Transition(st_4, [ - fac.UpdateInstruction(cc_2, False) ])) - st_3._set_transitionSet(transitions) - transitions = [] - st_4._set_transitionSet(transitions) - return fac.Automaton(states, counters, False, containing_state=None) -ContigSetType._Automaton = _BuildAutomaton_21() - - - - -ReadSetType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'DataSetMetadata'), ReadSetMetadataType, scope=ReadSetType, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 333, 10))) - -def _BuildAutomaton_22 (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_22 - del _BuildAutomaton_22 - import pyxb.utils.fac as fac - - counters = set() - cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - counters.add(cc_0) - cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 277, 10)) - counters.add(cc_1) - cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 287, 10)) - counters.add(cc_2) - cc_3 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 333, 10)) - counters.add(cc_3) - states = [] - final_update = None - symbol = pyxb.binding.content.ElementUse(ReadSetType._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - final_update = set() - symbol = pyxb.binding.content.ElementUse(ReadSetType._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'ExternalResources')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 276, 10)) - st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_1) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_1, False)) - symbol = pyxb.binding.content.ElementUse(ReadSetType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Filters')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 277, 10)) - st_2 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_2) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_2, False)) - symbol = pyxb.binding.content.ElementUse(ReadSetType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DataSets')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 287, 10)) - st_3 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_3) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_3, False)) - symbol = pyxb.binding.content.ElementUse(ReadSetType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DataSetMetadata')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 333, 10)) - st_4 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_4) - transitions = [] - transitions.append(fac.Transition(st_0, [ - fac.UpdateInstruction(cc_0, True) ])) - transitions.append(fac.Transition(st_1, [ - fac.UpdateInstruction(cc_0, False) ])) - st_0._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_2, [ - ])) - transitions.append(fac.Transition(st_3, [ - ])) - transitions.append(fac.Transition(st_4, [ - ])) - st_1._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_2, [ - fac.UpdateInstruction(cc_1, True) ])) - transitions.append(fac.Transition(st_3, [ - fac.UpdateInstruction(cc_1, False) ])) - transitions.append(fac.Transition(st_4, [ - fac.UpdateInstruction(cc_1, False) ])) - st_2._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_3, [ - fac.UpdateInstruction(cc_2, True) ])) - transitions.append(fac.Transition(st_4, [ - fac.UpdateInstruction(cc_2, False) ])) - st_3._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_4, [ - fac.UpdateInstruction(cc_3, True) ])) - st_4._set_transitionSet(transitions) - return fac.Automaton(states, counters, False, containing_state=None) -ReadSetType._Automaton = _BuildAutomaton_22() - - - - -def _BuildAutomaton_23 (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_23 - del _BuildAutomaton_23 - import pyxb.utils.fac as fac - - counters = set() - cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - counters.add(cc_0) - cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 277, 10)) - counters.add(cc_1) - cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 287, 10)) - counters.add(cc_2) - cc_3 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 163, 10)) - counters.add(cc_3) - states = [] - final_update = None - symbol = pyxb.binding.content.ElementUse(CTD_ANON_8._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - final_update = set() - symbol = pyxb.binding.content.ElementUse(CTD_ANON_8._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'ExternalResources')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 276, 10)) - st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_1) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_1, False)) - symbol = pyxb.binding.content.ElementUse(CTD_ANON_8._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Filters')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 277, 10)) - st_2 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_2) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_2, False)) - symbol = pyxb.binding.content.ElementUse(CTD_ANON_8._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DataSets')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 287, 10)) - st_3 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_3) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_3, False)) - symbol = pyxb.binding.content.ElementUse(CTD_ANON_8._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DataSetMetadata')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 163, 10)) - st_4 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_4) - transitions = [] - transitions.append(fac.Transition(st_0, [ - fac.UpdateInstruction(cc_0, True) ])) - transitions.append(fac.Transition(st_1, [ - fac.UpdateInstruction(cc_0, False) ])) - st_0._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_2, [ - ])) - transitions.append(fac.Transition(st_3, [ - ])) - transitions.append(fac.Transition(st_4, [ - ])) - st_1._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_2, [ - fac.UpdateInstruction(cc_1, True) ])) - transitions.append(fac.Transition(st_3, [ - fac.UpdateInstruction(cc_1, False) ])) - transitions.append(fac.Transition(st_4, [ - fac.UpdateInstruction(cc_1, False) ])) - st_2._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_3, [ - fac.UpdateInstruction(cc_2, True) ])) - transitions.append(fac.Transition(st_4, [ - fac.UpdateInstruction(cc_2, False) ])) - st_3._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_4, [ - fac.UpdateInstruction(cc_3, True) ])) - st_4._set_transitionSet(transitions) - return fac.Automaton(states, counters, False, containing_state=None) -CTD_ANON_8._Automaton = _BuildAutomaton_23() - - - - -def _BuildAutomaton_24 (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_24 - del _BuildAutomaton_24 - import pyxb.utils.fac as fac - - counters = set() - cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - counters.add(cc_0) - cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 277, 10)) - counters.add(cc_1) - cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 287, 10)) - counters.add(cc_2) - states = [] - final_update = None - symbol = pyxb.binding.content.ElementUse(CTD_ANON_9._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - final_update = None - symbol = pyxb.binding.content.ElementUse(CTD_ANON_9._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'ExternalResources')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 276, 10)) - st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_1) - final_update = None - symbol = pyxb.binding.content.ElementUse(CTD_ANON_9._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Filters')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 277, 10)) - st_2 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_2) - final_update = None - symbol = pyxb.binding.content.ElementUse(CTD_ANON_9._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DataSets')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 287, 10)) - st_3 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_3) - final_update = set() - symbol = pyxb.binding.content.ElementUse(CTD_ANON_9._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DataSetMetadata')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 201, 10)) - st_4 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_4) - transitions = [] - transitions.append(fac.Transition(st_0, [ - fac.UpdateInstruction(cc_0, True) ])) - transitions.append(fac.Transition(st_1, [ - fac.UpdateInstruction(cc_0, False) ])) - st_0._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_2, [ - ])) - transitions.append(fac.Transition(st_3, [ - ])) - transitions.append(fac.Transition(st_4, [ - ])) - st_1._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_2, [ - fac.UpdateInstruction(cc_1, True) ])) - transitions.append(fac.Transition(st_3, [ - fac.UpdateInstruction(cc_1, False) ])) - transitions.append(fac.Transition(st_4, [ - fac.UpdateInstruction(cc_1, False) ])) - st_2._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_3, [ - fac.UpdateInstruction(cc_2, True) ])) - transitions.append(fac.Transition(st_4, [ - fac.UpdateInstruction(cc_2, False) ])) - st_3._set_transitionSet(transitions) - transitions = [] - st_4._set_transitionSet(transitions) - return fac.Automaton(states, counters, False, containing_state=None) -CTD_ANON_9._Automaton = _BuildAutomaton_24() - - - - -def _BuildAutomaton_25 (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_25 - del _BuildAutomaton_25 - import pyxb.utils.fac as fac - - counters = set() - cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - counters.add(cc_0) - cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 277, 10)) - counters.add(cc_1) - cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 287, 10)) - counters.add(cc_2) - cc_3 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 163, 10)) - counters.add(cc_3) - states = [] - final_update = None - symbol = pyxb.binding.content.ElementUse(CTD_ANON_10._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - final_update = set() - symbol = pyxb.binding.content.ElementUse(CTD_ANON_10._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'ExternalResources')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 276, 10)) - st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_1) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_1, False)) - symbol = pyxb.binding.content.ElementUse(CTD_ANON_10._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Filters')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 277, 10)) - st_2 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_2) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_2, False)) - symbol = pyxb.binding.content.ElementUse(CTD_ANON_10._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DataSets')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 287, 10)) - st_3 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_3) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_3, False)) - symbol = pyxb.binding.content.ElementUse(CTD_ANON_10._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DataSetMetadata')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 163, 10)) - st_4 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_4) - transitions = [] - transitions.append(fac.Transition(st_0, [ - fac.UpdateInstruction(cc_0, True) ])) - transitions.append(fac.Transition(st_1, [ - fac.UpdateInstruction(cc_0, False) ])) - st_0._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_2, [ - ])) - transitions.append(fac.Transition(st_3, [ - ])) - transitions.append(fac.Transition(st_4, [ - ])) - st_1._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_2, [ - fac.UpdateInstruction(cc_1, True) ])) - transitions.append(fac.Transition(st_3, [ - fac.UpdateInstruction(cc_1, False) ])) - transitions.append(fac.Transition(st_4, [ - fac.UpdateInstruction(cc_1, False) ])) - st_2._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_3, [ - fac.UpdateInstruction(cc_2, True) ])) - transitions.append(fac.Transition(st_4, [ - fac.UpdateInstruction(cc_2, False) ])) - st_3._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_4, [ - fac.UpdateInstruction(cc_3, True) ])) - st_4._set_transitionSet(transitions) - return fac.Automaton(states, counters, False, containing_state=None) -CTD_ANON_10._Automaton = _BuildAutomaton_25() - - - - -def _BuildAutomaton_26 (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_26 - del _BuildAutomaton_26 - import pyxb.utils.fac as fac - - counters = set() - cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - counters.add(cc_0) - cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 277, 10)) - counters.add(cc_1) - cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 287, 10)) - counters.add(cc_2) - cc_3 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 163, 10)) - counters.add(cc_3) - states = [] - final_update = None - symbol = pyxb.binding.content.ElementUse(CTD_ANON_11._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - final_update = set() - symbol = pyxb.binding.content.ElementUse(CTD_ANON_11._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'ExternalResources')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 276, 10)) - st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_1) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_1, False)) - symbol = pyxb.binding.content.ElementUse(CTD_ANON_11._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Filters')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 277, 10)) - st_2 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_2) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_2, False)) - symbol = pyxb.binding.content.ElementUse(CTD_ANON_11._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DataSets')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 287, 10)) - st_3 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_3) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_3, False)) - symbol = pyxb.binding.content.ElementUse(CTD_ANON_11._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DataSetMetadata')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 163, 10)) - st_4 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_4) - transitions = [] - transitions.append(fac.Transition(st_0, [ - fac.UpdateInstruction(cc_0, True) ])) - transitions.append(fac.Transition(st_1, [ - fac.UpdateInstruction(cc_0, False) ])) - st_0._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_2, [ - ])) - transitions.append(fac.Transition(st_3, [ - ])) - transitions.append(fac.Transition(st_4, [ - ])) - st_1._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_2, [ - fac.UpdateInstruction(cc_1, True) ])) - transitions.append(fac.Transition(st_3, [ - fac.UpdateInstruction(cc_1, False) ])) - transitions.append(fac.Transition(st_4, [ - fac.UpdateInstruction(cc_1, False) ])) - st_2._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_3, [ - fac.UpdateInstruction(cc_2, True) ])) - transitions.append(fac.Transition(st_4, [ - fac.UpdateInstruction(cc_2, False) ])) - st_3._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_4, [ - fac.UpdateInstruction(cc_3, True) ])) - st_4._set_transitionSet(transitions) - return fac.Automaton(states, counters, False, containing_state=None) -CTD_ANON_11._Automaton = _BuildAutomaton_26() - - - - -def _BuildAutomaton_27 (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_27 - del _BuildAutomaton_27 - import pyxb.utils.fac as fac - - counters = set() - cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - counters.add(cc_0) - cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 277, 10)) - counters.add(cc_1) - cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 287, 10)) - counters.add(cc_2) - cc_3 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 333, 10)) - counters.add(cc_3) - states = [] - final_update = None - symbol = pyxb.binding.content.ElementUse(CTD_ANON_12._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - final_update = set() - symbol = pyxb.binding.content.ElementUse(CTD_ANON_12._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'ExternalResources')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 276, 10)) - st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_1) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_1, False)) - symbol = pyxb.binding.content.ElementUse(CTD_ANON_12._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Filters')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 277, 10)) - st_2 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_2) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_2, False)) - symbol = pyxb.binding.content.ElementUse(CTD_ANON_12._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DataSets')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 287, 10)) - st_3 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_3) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_3, False)) - symbol = pyxb.binding.content.ElementUse(CTD_ANON_12._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DataSetMetadata')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 333, 10)) - st_4 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_4) - transitions = [] - transitions.append(fac.Transition(st_0, [ - fac.UpdateInstruction(cc_0, True) ])) - transitions.append(fac.Transition(st_1, [ - fac.UpdateInstruction(cc_0, False) ])) - st_0._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_2, [ - ])) - transitions.append(fac.Transition(st_3, [ - ])) - transitions.append(fac.Transition(st_4, [ - ])) - st_1._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_2, [ - fac.UpdateInstruction(cc_1, True) ])) - transitions.append(fac.Transition(st_3, [ - fac.UpdateInstruction(cc_1, False) ])) - transitions.append(fac.Transition(st_4, [ - fac.UpdateInstruction(cc_1, False) ])) - st_2._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_3, [ - fac.UpdateInstruction(cc_2, True) ])) - transitions.append(fac.Transition(st_4, [ - fac.UpdateInstruction(cc_2, False) ])) - st_3._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_4, [ - fac.UpdateInstruction(cc_3, True) ])) - st_4._set_transitionSet(transitions) - return fac.Automaton(states, counters, False, containing_state=None) -CTD_ANON_12._Automaton = _BuildAutomaton_27() - - - - -def _BuildAutomaton_28 (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_28 - del _BuildAutomaton_28 - import pyxb.utils.fac as fac - - counters = set() - cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - counters.add(cc_0) - cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 277, 10)) - counters.add(cc_1) - cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 287, 10)) - counters.add(cc_2) - cc_3 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 175, 10)) - counters.add(cc_3) - states = [] - final_update = None - symbol = pyxb.binding.content.ElementUse(CTD_ANON_13._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - final_update = set() - symbol = pyxb.binding.content.ElementUse(CTD_ANON_13._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'ExternalResources')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 276, 10)) - st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_1) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_1, False)) - symbol = pyxb.binding.content.ElementUse(CTD_ANON_13._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Filters')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 277, 10)) - st_2 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_2) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_2, False)) - symbol = pyxb.binding.content.ElementUse(CTD_ANON_13._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DataSets')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 287, 10)) - st_3 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_3) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_3, False)) - symbol = pyxb.binding.content.ElementUse(CTD_ANON_13._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DataSetMetadata')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 175, 10)) - st_4 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_4) - transitions = [] - transitions.append(fac.Transition(st_0, [ - fac.UpdateInstruction(cc_0, True) ])) - transitions.append(fac.Transition(st_1, [ - fac.UpdateInstruction(cc_0, False) ])) - st_0._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_2, [ - ])) - transitions.append(fac.Transition(st_3, [ - ])) - transitions.append(fac.Transition(st_4, [ - ])) - st_1._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_2, [ - fac.UpdateInstruction(cc_1, True) ])) - transitions.append(fac.Transition(st_3, [ - fac.UpdateInstruction(cc_1, False) ])) - transitions.append(fac.Transition(st_4, [ - fac.UpdateInstruction(cc_1, False) ])) - st_2._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_3, [ - fac.UpdateInstruction(cc_2, True) ])) - transitions.append(fac.Transition(st_4, [ - fac.UpdateInstruction(cc_2, False) ])) - st_3._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_4, [ - fac.UpdateInstruction(cc_3, True) ])) - st_4._set_transitionSet(transitions) - return fac.Automaton(states, counters, False, containing_state=None) -CTD_ANON_13._Automaton = _BuildAutomaton_28() - - - - -def _BuildAutomaton_29 (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_29 - del _BuildAutomaton_29 - import pyxb.utils.fac as fac - - counters = set() - cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - counters.add(cc_0) - cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 277, 10)) - counters.add(cc_1) - cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 287, 10)) - counters.add(cc_2) - states = [] - final_update = None - symbol = pyxb.binding.content.ElementUse(CTD_ANON_14._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - final_update = None - symbol = pyxb.binding.content.ElementUse(CTD_ANON_14._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'ExternalResources')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 276, 10)) - st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_1) - final_update = None - symbol = pyxb.binding.content.ElementUse(CTD_ANON_14._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Filters')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 277, 10)) - st_2 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_2) - final_update = None - symbol = pyxb.binding.content.ElementUse(CTD_ANON_14._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DataSets')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 287, 10)) - st_3 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_3) - final_update = set() - symbol = pyxb.binding.content.ElementUse(CTD_ANON_14._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DataSetMetadata')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 224, 10)) - st_4 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_4) - transitions = [] - transitions.append(fac.Transition(st_0, [ - fac.UpdateInstruction(cc_0, True) ])) - transitions.append(fac.Transition(st_1, [ - fac.UpdateInstruction(cc_0, False) ])) - st_0._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_2, [ - ])) - transitions.append(fac.Transition(st_3, [ - ])) - transitions.append(fac.Transition(st_4, [ - ])) - st_1._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_2, [ - fac.UpdateInstruction(cc_1, True) ])) - transitions.append(fac.Transition(st_3, [ - fac.UpdateInstruction(cc_1, False) ])) - transitions.append(fac.Transition(st_4, [ - fac.UpdateInstruction(cc_1, False) ])) - st_2._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_3, [ - fac.UpdateInstruction(cc_2, True) ])) - transitions.append(fac.Transition(st_4, [ - fac.UpdateInstruction(cc_2, False) ])) - st_3._set_transitionSet(transitions) - transitions = [] - st_4._set_transitionSet(transitions) - return fac.Automaton(states, counters, False, containing_state=None) -CTD_ANON_14._Automaton = _BuildAutomaton_29() - - - - -def _BuildAutomaton_30 (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_30 - del _BuildAutomaton_30 - import pyxb.utils.fac as fac - - counters = set() - cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - counters.add(cc_0) - cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 277, 10)) - counters.add(cc_1) - cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 287, 10)) - counters.add(cc_2) - cc_3 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 333, 10)) - counters.add(cc_3) - states = [] - final_update = None - symbol = pyxb.binding.content.ElementUse(CTD_ANON_15._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - final_update = set() - symbol = pyxb.binding.content.ElementUse(CTD_ANON_15._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'ExternalResources')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 276, 10)) - st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_1) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_1, False)) - symbol = pyxb.binding.content.ElementUse(CTD_ANON_15._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Filters')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 277, 10)) - st_2 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_2) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_2, False)) - symbol = pyxb.binding.content.ElementUse(CTD_ANON_15._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DataSets')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 287, 10)) - st_3 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_3) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_3, False)) - symbol = pyxb.binding.content.ElementUse(CTD_ANON_15._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DataSetMetadata')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 333, 10)) - st_4 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_4) - transitions = [] - transitions.append(fac.Transition(st_0, [ - fac.UpdateInstruction(cc_0, True) ])) - transitions.append(fac.Transition(st_1, [ - fac.UpdateInstruction(cc_0, False) ])) - st_0._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_2, [ - ])) - transitions.append(fac.Transition(st_3, [ - ])) - transitions.append(fac.Transition(st_4, [ - ])) - st_1._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_2, [ - fac.UpdateInstruction(cc_1, True) ])) - transitions.append(fac.Transition(st_3, [ - fac.UpdateInstruction(cc_1, False) ])) - transitions.append(fac.Transition(st_4, [ - fac.UpdateInstruction(cc_1, False) ])) - st_2._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_3, [ - fac.UpdateInstruction(cc_2, True) ])) - transitions.append(fac.Transition(st_4, [ - fac.UpdateInstruction(cc_2, False) ])) - st_3._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_4, [ - fac.UpdateInstruction(cc_3, True) ])) - st_4._set_transitionSet(transitions) - return fac.Automaton(states, counters, False, containing_state=None) -CTD_ANON_15._Automaton = _BuildAutomaton_30() - - - - -def _BuildAutomaton_31 (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_31 - del _BuildAutomaton_31 - import pyxb.utils.fac as fac - - counters = set() - cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - counters.add(cc_0) - cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 277, 10)) - counters.add(cc_1) - cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 287, 10)) - counters.add(cc_2) - states = [] - final_update = None - symbol = pyxb.binding.content.ElementUse(CTD_ANON_16._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - final_update = None - symbol = pyxb.binding.content.ElementUse(CTD_ANON_16._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'ExternalResources')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 276, 10)) - st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_1) - final_update = None - symbol = pyxb.binding.content.ElementUse(CTD_ANON_16._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Filters')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 277, 10)) - st_2 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_2) - final_update = None - symbol = pyxb.binding.content.ElementUse(CTD_ANON_16._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DataSets')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 287, 10)) - st_3 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_3) - final_update = set() - symbol = pyxb.binding.content.ElementUse(CTD_ANON_16._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DataSetMetadata')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 224, 10)) - st_4 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_4) - transitions = [] - transitions.append(fac.Transition(st_0, [ - fac.UpdateInstruction(cc_0, True) ])) - transitions.append(fac.Transition(st_1, [ - fac.UpdateInstruction(cc_0, False) ])) - st_0._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_2, [ - ])) - transitions.append(fac.Transition(st_3, [ - ])) - transitions.append(fac.Transition(st_4, [ - ])) - st_1._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_2, [ - fac.UpdateInstruction(cc_1, True) ])) - transitions.append(fac.Transition(st_3, [ - fac.UpdateInstruction(cc_1, False) ])) - transitions.append(fac.Transition(st_4, [ - fac.UpdateInstruction(cc_1, False) ])) - st_2._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_3, [ - fac.UpdateInstruction(cc_2, True) ])) - transitions.append(fac.Transition(st_4, [ - fac.UpdateInstruction(cc_2, False) ])) - st_3._set_transitionSet(transitions) - transitions = [] - st_4._set_transitionSet(transitions) - return fac.Automaton(states, counters, False, containing_state=None) -CTD_ANON_16._Automaton = _BuildAutomaton_31() - - - - -def _BuildAutomaton_32 (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_32 - del _BuildAutomaton_32 - import pyxb.utils.fac as fac - - counters = set() - cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - counters.add(cc_0) - cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 277, 10)) - counters.add(cc_1) - cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 287, 10)) - counters.add(cc_2) - states = [] - final_update = None - symbol = pyxb.binding.content.ElementUse(CTD_ANON_17._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - final_update = None - symbol = pyxb.binding.content.ElementUse(CTD_ANON_17._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'ExternalResources')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 276, 10)) - st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_1) - final_update = None - symbol = pyxb.binding.content.ElementUse(CTD_ANON_17._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Filters')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 277, 10)) - st_2 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_2) - final_update = None - symbol = pyxb.binding.content.ElementUse(CTD_ANON_17._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DataSets')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 287, 10)) - st_3 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_3) - final_update = set() - symbol = pyxb.binding.content.ElementUse(CTD_ANON_17._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DataSetMetadata')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 224, 10)) - st_4 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_4) - transitions = [] - transitions.append(fac.Transition(st_0, [ - fac.UpdateInstruction(cc_0, True) ])) - transitions.append(fac.Transition(st_1, [ - fac.UpdateInstruction(cc_0, False) ])) - st_0._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_2, [ - ])) - transitions.append(fac.Transition(st_3, [ - ])) - transitions.append(fac.Transition(st_4, [ - ])) - st_1._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_2, [ - fac.UpdateInstruction(cc_1, True) ])) - transitions.append(fac.Transition(st_3, [ - fac.UpdateInstruction(cc_1, False) ])) - transitions.append(fac.Transition(st_4, [ - fac.UpdateInstruction(cc_1, False) ])) - st_2._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_3, [ - fac.UpdateInstruction(cc_2, True) ])) - transitions.append(fac.Transition(st_4, [ - fac.UpdateInstruction(cc_2, False) ])) - st_3._set_transitionSet(transitions) - transitions = [] - st_4._set_transitionSet(transitions) - return fac.Automaton(states, counters, False, containing_state=None) -CTD_ANON_17._Automaton = _BuildAutomaton_32() - - - - -def _BuildAutomaton_33 (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_33 - del _BuildAutomaton_33 - import pyxb.utils.fac as fac - - counters = set() - cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - counters.add(cc_0) - cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 277, 10)) - counters.add(cc_1) - cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 287, 10)) - counters.add(cc_2) - cc_3 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 333, 10)) - counters.add(cc_3) - states = [] - final_update = None - symbol = pyxb.binding.content.ElementUse(SubreadSetType._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - final_update = set() - symbol = pyxb.binding.content.ElementUse(SubreadSetType._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'ExternalResources')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 276, 10)) - st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_1) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_1, False)) - symbol = pyxb.binding.content.ElementUse(SubreadSetType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Filters')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 277, 10)) - st_2 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_2) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_2, False)) - symbol = pyxb.binding.content.ElementUse(SubreadSetType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DataSets')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 287, 10)) - st_3 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_3) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_3, False)) - symbol = pyxb.binding.content.ElementUse(SubreadSetType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DataSetMetadata')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 333, 10)) - st_4 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_4) - transitions = [] - transitions.append(fac.Transition(st_0, [ - fac.UpdateInstruction(cc_0, True) ])) - transitions.append(fac.Transition(st_1, [ - fac.UpdateInstruction(cc_0, False) ])) - st_0._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_2, [ - ])) - transitions.append(fac.Transition(st_3, [ - ])) - transitions.append(fac.Transition(st_4, [ - ])) - st_1._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_2, [ - fac.UpdateInstruction(cc_1, True) ])) - transitions.append(fac.Transition(st_3, [ - fac.UpdateInstruction(cc_1, False) ])) - transitions.append(fac.Transition(st_4, [ - fac.UpdateInstruction(cc_1, False) ])) - st_2._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_3, [ - fac.UpdateInstruction(cc_2, True) ])) - transitions.append(fac.Transition(st_4, [ - fac.UpdateInstruction(cc_2, False) ])) - st_3._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_4, [ - fac.UpdateInstruction(cc_3, True) ])) - st_4._set_transitionSet(transitions) - return fac.Automaton(states, counters, False, containing_state=None) -SubreadSetType._Automaton = _BuildAutomaton_33() - - - - -def _BuildAutomaton_34 (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_34 - del _BuildAutomaton_34 - import pyxb.utils.fac as fac - - counters = set() - cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - counters.add(cc_0) - cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 277, 10)) - counters.add(cc_1) - cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 287, 10)) - counters.add(cc_2) - cc_3 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 333, 10)) - counters.add(cc_3) - states = [] - final_update = None - symbol = pyxb.binding.content.ElementUse(CTD_ANON_18._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - final_update = set() - symbol = pyxb.binding.content.ElementUse(CTD_ANON_18._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'ExternalResources')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 276, 10)) - st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_1) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_1, False)) - symbol = pyxb.binding.content.ElementUse(CTD_ANON_18._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Filters')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 277, 10)) - st_2 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_2) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_2, False)) - symbol = pyxb.binding.content.ElementUse(CTD_ANON_18._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DataSets')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 287, 10)) - st_3 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_3) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_3, False)) - symbol = pyxb.binding.content.ElementUse(CTD_ANON_18._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DataSetMetadata')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioDatasets.xsd', 333, 10)) - st_4 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_4) - transitions = [] - transitions.append(fac.Transition(st_0, [ - fac.UpdateInstruction(cc_0, True) ])) - transitions.append(fac.Transition(st_1, [ - fac.UpdateInstruction(cc_0, False) ])) - st_0._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_2, [ - ])) - transitions.append(fac.Transition(st_3, [ - ])) - transitions.append(fac.Transition(st_4, [ - ])) - st_1._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_2, [ - fac.UpdateInstruction(cc_1, True) ])) - transitions.append(fac.Transition(st_3, [ - fac.UpdateInstruction(cc_1, False) ])) - transitions.append(fac.Transition(st_4, [ - fac.UpdateInstruction(cc_1, False) ])) - st_2._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_3, [ - fac.UpdateInstruction(cc_2, True) ])) - transitions.append(fac.Transition(st_4, [ - fac.UpdateInstruction(cc_2, False) ])) - st_3._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_4, [ - fac.UpdateInstruction(cc_3, True) ])) - st_4._set_transitionSet(transitions) - return fac.Automaton(states, counters, False, containing_state=None) -CTD_ANON_18._Automaton = _BuildAutomaton_34() - --- a/pbcore/io/dataset/pyxb/__init__.py +++ /dev/null @@ -1,3 +0,0 @@ -from __future__ import absolute_import, division, print_function - -XSD_CHANGELIST = "2a2f16733e087d67f89a46e277519d0445bf726b" --- a/pbcore/io/dataset/pyxb/_pbbase.py +++ /dev/null @@ -1,5916 +0,0 @@ -# pbcore/io/dataset/pyxb/_pbbase.py -# -*- coding: utf-8 -*- -# PyXB bindings for NM:304355e4be645ec0738f0143f32dd444bf98ad15 -# Generated 2020-05-05 09:21:48.245651 by PyXB version 1.2.6 using Python 3.7.3.final.0 -# Namespace http://pacificbiosciences.com/PacBioBaseDataModel.xsd [xmlns:pbbase] - -from __future__ import unicode_literals -import pyxb -import pyxb.binding -import pyxb.binding.saxer -import io -import pyxb.utils.utility -import pyxb.utils.domutils -import sys -import pyxb.utils.six as _six -# Unique identifier for bindings created at the same time -_GenerationUID = pyxb.utils.utility.UniqueIdentifier('urn:uuid:84ba9ef6-8eec-11ea-9839-005056871a22') - -# Version of PyXB used to generate the bindings -_PyXBVersion = '1.2.6' -# Generated bindings are not compatible across PyXB versions -if pyxb.__version__ != _PyXBVersion: - raise pyxb.PyXBVersionError(_PyXBVersion) - -# A holder for module-level binding classes so we can access them from -# inside class definitions where property names may conflict. -_module_typeBindings = pyxb.utils.utility.Object() - -# Import bindings for namespaces imported into schema -import pyxb.binding.datatypes - -# NOTE: All namespace declarations are reserved within the binding -Namespace = pyxb.namespace.NamespaceForURI('http://pacificbiosciences.com/PacBioBaseDataModel.xsd', create_if_missing=True) -Namespace.configureCategories(['typeBinding', 'elementBinding']) - -def CreateFromDocument (xml_text, default_namespace=None, location_base=None): - """Parse the given XML and use the document element to create a - Python instance. - - @param xml_text An XML document. This should be data (Python 2 - str or Python 3 bytes), or a text (Python 2 unicode or Python 3 - str) in the L{pyxb._InputEncoding} encoding. - - @keyword default_namespace The L{pyxb.Namespace} instance to use as the - default namespace where there is no default namespace in scope. - If unspecified or C{None}, the namespace of the module containing - this function will be used. - - @keyword location_base: An object to be recorded as the base of all - L{pyxb.utils.utility.Location} instances associated with events and - objects handled by the parser. You might pass the URI from which - the document was obtained. - """ - - if pyxb.XMLStyle_saxer != pyxb._XMLStyle: - dom = pyxb.utils.domutils.StringToDOM(xml_text) - return CreateFromDOM(dom.documentElement, default_namespace=default_namespace) - if default_namespace is None: - default_namespace = Namespace.fallbackNamespace() - saxer = pyxb.binding.saxer.make_parser(fallback_namespace=default_namespace, location_base=location_base) - handler = saxer.getContentHandler() - xmld = xml_text - if isinstance(xmld, _six.text_type): - xmld = xmld.encode(pyxb._InputEncoding) - saxer.parse(io.BytesIO(xmld)) - instance = handler.rootObject() - return instance - -def CreateFromDOM (node, default_namespace=None): - """Create a Python instance from the given DOM node. - The node tag must correspond to an element declaration in this module. - - @deprecated: Forcing use of DOM interface is unnecessary; use L{CreateFromDocument}.""" - if default_namespace is None: - default_namespace = Namespace.fallbackNamespace() - return pyxb.binding.basis.element.AnyCreateFromDOM(node, default_namespace) - - -# Atomic simple type: [anonymous] -class STD_ANON (pyxb.binding.datatypes.dateTime): - - """An atomic simple type.""" - - _ExpandedName = None - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 140, 6) - _Documentation = None -STD_ANON._InitializeFacetMap() -_module_typeBindings.STD_ANON = STD_ANON - -# Atomic simple type: [anonymous] -class STD_ANON_ (pyxb.binding.datatypes.dateTime): - - """An atomic simple type.""" - - _ExpandedName = None - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 148, 6) - _Documentation = None -STD_ANON_._InitializeFacetMap() -_module_typeBindings.STD_ANON_ = STD_ANON_ - -# Atomic simple type: [anonymous] -class STD_ANON_2 (pyxb.binding.datatypes.string): - - """An atomic simple type.""" - - _ExpandedName = None - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 163, 10) - _Documentation = None -STD_ANON_2._CF_length = pyxb.binding.facets.CF_length(value=pyxb.binding.datatypes.nonNegativeInteger(36)) -STD_ANON_2._CF_pattern = pyxb.binding.facets.CF_pattern() -STD_ANON_2._CF_pattern.addPattern(pattern='[a-fA-F0-9]{8}-[a-fA-F0-9]{4}-[a-fA-F0-9]{4}-[a-fA-F0-9]{4}-[a-fA-F0-9]{12}') -STD_ANON_2._InitializeFacetMap(STD_ANON_2._CF_length, - STD_ANON_2._CF_pattern) -_module_typeBindings.STD_ANON_2 = STD_ANON_2 - -# Atomic simple type: [anonymous] -class STD_ANON_3 (pyxb.binding.datatypes.string): - - """An atomic simple type.""" - - _ExpandedName = None - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 260, 10) - _Documentation = None -STD_ANON_3._CF_length = pyxb.binding.facets.CF_length(value=pyxb.binding.datatypes.nonNegativeInteger(36)) -STD_ANON_3._CF_pattern = pyxb.binding.facets.CF_pattern() -STD_ANON_3._CF_pattern.addPattern(pattern='[a-fA-F0-9]{8}-[a-fA-F0-9]{4}-[a-fA-F0-9]{4}-[a-fA-F0-9]{4}-[a-fA-F0-9]{12}') -STD_ANON_3._InitializeFacetMap(STD_ANON_3._CF_length, - STD_ANON_3._CF_pattern) -_module_typeBindings.STD_ANON_3 = STD_ANON_3 - -# Atomic simple type: {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}SupportedAcquisitionStates -class SupportedAcquisitionStates (pyxb.binding.datatypes.string, pyxb.binding.basis.enumeration_mixin): - - """An atomic simple type.""" - - _ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'SupportedAcquisitionStates') - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 803, 2) - _Documentation = None -SupportedAcquisitionStates._CF_enumeration = pyxb.binding.facets.CF_enumeration(value_datatype=SupportedAcquisitionStates, enum_prefix=None) -SupportedAcquisitionStates.Ready = SupportedAcquisitionStates._CF_enumeration.addEnumeration(unicode_value='Ready', tag='Ready') -SupportedAcquisitionStates.Initializing = SupportedAcquisitionStates._CF_enumeration.addEnumeration(unicode_value='Initializing', tag='Initializing') -SupportedAcquisitionStates.SocketDiagnostics = SupportedAcquisitionStates._CF_enumeration.addEnumeration(unicode_value='SocketDiagnostics', tag='SocketDiagnostics') -SupportedAcquisitionStates.Acquiring = SupportedAcquisitionStates._CF_enumeration.addEnumeration(unicode_value='Acquiring', tag='Acquiring') -SupportedAcquisitionStates.Aligning = SupportedAcquisitionStates._CF_enumeration.addEnumeration(unicode_value='Aligning', tag='Aligning') -SupportedAcquisitionStates.Aligned = SupportedAcquisitionStates._CF_enumeration.addEnumeration(unicode_value='Aligned', tag='Aligned') -SupportedAcquisitionStates.Aborting = SupportedAcquisitionStates._CF_enumeration.addEnumeration(unicode_value='Aborting', tag='Aborting') -SupportedAcquisitionStates.Aborted = SupportedAcquisitionStates._CF_enumeration.addEnumeration(unicode_value='Aborted', tag='Aborted') -SupportedAcquisitionStates.Failed = SupportedAcquisitionStates._CF_enumeration.addEnumeration(unicode_value='Failed', tag='Failed') -SupportedAcquisitionStates.Completing = SupportedAcquisitionStates._CF_enumeration.addEnumeration(unicode_value='Completing', tag='Completing') -SupportedAcquisitionStates.Complete = SupportedAcquisitionStates._CF_enumeration.addEnumeration(unicode_value='Complete', tag='Complete') -SupportedAcquisitionStates.Calibrating = SupportedAcquisitionStates._CF_enumeration.addEnumeration(unicode_value='Calibrating', tag='Calibrating') -SupportedAcquisitionStates.Unknown = SupportedAcquisitionStates._CF_enumeration.addEnumeration(unicode_value='Unknown', tag='Unknown') -SupportedAcquisitionStates.Pending = SupportedAcquisitionStates._CF_enumeration.addEnumeration(unicode_value='Pending', tag='Pending') -SupportedAcquisitionStates.ReadyToCalibrate = SupportedAcquisitionStates._CF_enumeration.addEnumeration(unicode_value='ReadyToCalibrate', tag='ReadyToCalibrate') -SupportedAcquisitionStates.CalibrationComplete = SupportedAcquisitionStates._CF_enumeration.addEnumeration(unicode_value='CalibrationComplete', tag='CalibrationComplete') -SupportedAcquisitionStates.ReadyToAcquire = SupportedAcquisitionStates._CF_enumeration.addEnumeration(unicode_value='ReadyToAcquire', tag='ReadyToAcquire') -SupportedAcquisitionStates.FinishingAnalysis = SupportedAcquisitionStates._CF_enumeration.addEnumeration(unicode_value='FinishingAnalysis', tag='FinishingAnalysis') -SupportedAcquisitionStates.PostPrimaryPending = SupportedAcquisitionStates._CF_enumeration.addEnumeration(unicode_value='PostPrimaryPending', tag='PostPrimaryPending') -SupportedAcquisitionStates.PostPrimaryAnalysis = SupportedAcquisitionStates._CF_enumeration.addEnumeration(unicode_value='PostPrimaryAnalysis', tag='PostPrimaryAnalysis') -SupportedAcquisitionStates.TransferPending = SupportedAcquisitionStates._CF_enumeration.addEnumeration(unicode_value='TransferPending', tag='TransferPending') -SupportedAcquisitionStates.TransferringResults = SupportedAcquisitionStates._CF_enumeration.addEnumeration(unicode_value='TransferringResults', tag='TransferringResults') -SupportedAcquisitionStates.Error = SupportedAcquisitionStates._CF_enumeration.addEnumeration(unicode_value='Error', tag='Error') -SupportedAcquisitionStates.Stopped = SupportedAcquisitionStates._CF_enumeration.addEnumeration(unicode_value='Stopped', tag='Stopped') -SupportedAcquisitionStates.TransferFailed = SupportedAcquisitionStates._CF_enumeration.addEnumeration(unicode_value='TransferFailed', tag='TransferFailed') -SupportedAcquisitionStates.InPrep = SupportedAcquisitionStates._CF_enumeration.addEnumeration(unicode_value='InPrep', tag='InPrep') -SupportedAcquisitionStates.PredictiveLoading = SupportedAcquisitionStates._CF_enumeration.addEnumeration(unicode_value='PredictiveLoading', tag='PredictiveLoading') -SupportedAcquisitionStates._InitializeFacetMap(SupportedAcquisitionStates._CF_enumeration) -Namespace.addCategoryObject('typeBinding', 'SupportedAcquisitionStates', SupportedAcquisitionStates) -_module_typeBindings.SupportedAcquisitionStates = SupportedAcquisitionStates - -# Atomic simple type: {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}SupportedDataTypes -class SupportedDataTypes (pyxb.binding.datatypes.string, pyxb.binding.basis.enumeration_mixin): - - """An atomic simple type.""" - - _ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'SupportedDataTypes') - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 834, 2) - _Documentation = None -SupportedDataTypes._CF_enumeration = pyxb.binding.facets.CF_enumeration(value_datatype=SupportedDataTypes, enum_prefix=None) -SupportedDataTypes.Int16 = SupportedDataTypes._CF_enumeration.addEnumeration(unicode_value='Int16', tag='Int16') -SupportedDataTypes.Int32 = SupportedDataTypes._CF_enumeration.addEnumeration(unicode_value='Int32', tag='Int32') -SupportedDataTypes.Int64 = SupportedDataTypes._CF_enumeration.addEnumeration(unicode_value='Int64', tag='Int64') -SupportedDataTypes.UInt16 = SupportedDataTypes._CF_enumeration.addEnumeration(unicode_value='UInt16', tag='UInt16') -SupportedDataTypes.UInt32 = SupportedDataTypes._CF_enumeration.addEnumeration(unicode_value='UInt32', tag='UInt32') -SupportedDataTypes.UInt64 = SupportedDataTypes._CF_enumeration.addEnumeration(unicode_value='UInt64', tag='UInt64') -SupportedDataTypes.Boolean = SupportedDataTypes._CF_enumeration.addEnumeration(unicode_value='Boolean', tag='Boolean') -SupportedDataTypes.Single = SupportedDataTypes._CF_enumeration.addEnumeration(unicode_value='Single', tag='Single') -SupportedDataTypes.Double = SupportedDataTypes._CF_enumeration.addEnumeration(unicode_value='Double', tag='Double') -SupportedDataTypes.String = SupportedDataTypes._CF_enumeration.addEnumeration(unicode_value='String', tag='String') -SupportedDataTypes.DateTime = SupportedDataTypes._CF_enumeration.addEnumeration(unicode_value='DateTime', tag='DateTime') -SupportedDataTypes.Int16_1D = SupportedDataTypes._CF_enumeration.addEnumeration(unicode_value='Int16_1D', tag='Int16_1D') -SupportedDataTypes.Int32_1D = SupportedDataTypes._CF_enumeration.addEnumeration(unicode_value='Int32_1D', tag='Int32_1D') -SupportedDataTypes.Int64_1D = SupportedDataTypes._CF_enumeration.addEnumeration(unicode_value='Int64_1D', tag='Int64_1D') -SupportedDataTypes.UInt16_1D = SupportedDataTypes._CF_enumeration.addEnumeration(unicode_value='UInt16_1D', tag='UInt16_1D') -SupportedDataTypes.UInt32_1D = SupportedDataTypes._CF_enumeration.addEnumeration(unicode_value='UInt32_1D', tag='UInt32_1D') -SupportedDataTypes.UInt64_1D = SupportedDataTypes._CF_enumeration.addEnumeration(unicode_value='UInt64_1D', tag='UInt64_1D') -SupportedDataTypes.Boolean_1D = SupportedDataTypes._CF_enumeration.addEnumeration(unicode_value='Boolean_1D', tag='Boolean_1D') -SupportedDataTypes.Single_1D = SupportedDataTypes._CF_enumeration.addEnumeration(unicode_value='Single_1D', tag='Single_1D') -SupportedDataTypes.Double_1D = SupportedDataTypes._CF_enumeration.addEnumeration(unicode_value='Double_1D', tag='Double_1D') -SupportedDataTypes.String_1D = SupportedDataTypes._CF_enumeration.addEnumeration(unicode_value='String_1D', tag='String_1D') -SupportedDataTypes.DateTime_1D = SupportedDataTypes._CF_enumeration.addEnumeration(unicode_value='DateTime_1D', tag='DateTime_1D') -SupportedDataTypes.Int16_2D = SupportedDataTypes._CF_enumeration.addEnumeration(unicode_value='Int16_2D', tag='Int16_2D') -SupportedDataTypes.Int32_2D = SupportedDataTypes._CF_enumeration.addEnumeration(unicode_value='Int32_2D', tag='Int32_2D') -SupportedDataTypes.Int64_2D = SupportedDataTypes._CF_enumeration.addEnumeration(unicode_value='Int64_2D', tag='Int64_2D') -SupportedDataTypes.UInt16_2D = SupportedDataTypes._CF_enumeration.addEnumeration(unicode_value='UInt16_2D', tag='UInt16_2D') -SupportedDataTypes.UInt32_2D = SupportedDataTypes._CF_enumeration.addEnumeration(unicode_value='UInt32_2D', tag='UInt32_2D') -SupportedDataTypes.UInt64_2D = SupportedDataTypes._CF_enumeration.addEnumeration(unicode_value='UInt64_2D', tag='UInt64_2D') -SupportedDataTypes.Boolean_2D = SupportedDataTypes._CF_enumeration.addEnumeration(unicode_value='Boolean_2D', tag='Boolean_2D') -SupportedDataTypes.Single_2D = SupportedDataTypes._CF_enumeration.addEnumeration(unicode_value='Single_2D', tag='Single_2D') -SupportedDataTypes.Double_2D = SupportedDataTypes._CF_enumeration.addEnumeration(unicode_value='Double_2D', tag='Double_2D') -SupportedDataTypes.String_2D = SupportedDataTypes._CF_enumeration.addEnumeration(unicode_value='String_2D', tag='String_2D') -SupportedDataTypes.DateTime_2D = SupportedDataTypes._CF_enumeration.addEnumeration(unicode_value='DateTime_2D', tag='DateTime_2D') -SupportedDataTypes.XML = SupportedDataTypes._CF_enumeration.addEnumeration(unicode_value='XML', tag='XML') -SupportedDataTypes.JSON = SupportedDataTypes._CF_enumeration.addEnumeration(unicode_value='JSON', tag='JSON') -SupportedDataTypes.Object = SupportedDataTypes._CF_enumeration.addEnumeration(unicode_value='Object', tag='Object') -SupportedDataTypes.Other = SupportedDataTypes._CF_enumeration.addEnumeration(unicode_value='Other', tag='Other') -SupportedDataTypes.Unknown = SupportedDataTypes._CF_enumeration.addEnumeration(unicode_value='Unknown', tag='Unknown') -SupportedDataTypes._InitializeFacetMap(SupportedDataTypes._CF_enumeration) -Namespace.addCategoryObject('typeBinding', 'SupportedDataTypes', SupportedDataTypes) -_module_typeBindings.SupportedDataTypes = SupportedDataTypes - -# Atomic simple type: {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}SupportedNucleotides -class SupportedNucleotides (pyxb.binding.datatypes.string, pyxb.binding.basis.enumeration_mixin): - - """An atomic simple type.""" - - _ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'SupportedNucleotides') - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 876, 2) - _Documentation = None -SupportedNucleotides._CF_enumeration = pyxb.binding.facets.CF_enumeration(value_datatype=SupportedNucleotides, enum_prefix=None) -SupportedNucleotides.A = SupportedNucleotides._CF_enumeration.addEnumeration(unicode_value='A', tag='A') -SupportedNucleotides.C = SupportedNucleotides._CF_enumeration.addEnumeration(unicode_value='C', tag='C') -SupportedNucleotides.T = SupportedNucleotides._CF_enumeration.addEnumeration(unicode_value='T', tag='T') -SupportedNucleotides.G = SupportedNucleotides._CF_enumeration.addEnumeration(unicode_value='G', tag='G') -SupportedNucleotides._InitializeFacetMap(SupportedNucleotides._CF_enumeration) -Namespace.addCategoryObject('typeBinding', 'SupportedNucleotides', SupportedNucleotides) -_module_typeBindings.SupportedNucleotides = SupportedNucleotides - -# Atomic simple type: {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}SupportedRunStates -class SupportedRunStates (pyxb.binding.datatypes.string, pyxb.binding.basis.enumeration_mixin): - - """An atomic simple type.""" - - _ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'SupportedRunStates') - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 884, 2) - _Documentation = None -SupportedRunStates._CF_enumeration = pyxb.binding.facets.CF_enumeration(value_datatype=SupportedRunStates, enum_prefix=None) -SupportedRunStates.Ready = SupportedRunStates._CF_enumeration.addEnumeration(unicode_value='Ready', tag='Ready') -SupportedRunStates.Idle = SupportedRunStates._CF_enumeration.addEnumeration(unicode_value='Idle', tag='Idle') -SupportedRunStates.System_Test = SupportedRunStates._CF_enumeration.addEnumeration(unicode_value='System Test', tag='System_Test') -SupportedRunStates.Starting = SupportedRunStates._CF_enumeration.addEnumeration(unicode_value='Starting', tag='Starting') -SupportedRunStates.Running = SupportedRunStates._CF_enumeration.addEnumeration(unicode_value='Running', tag='Running') -SupportedRunStates.Aborting = SupportedRunStates._CF_enumeration.addEnumeration(unicode_value='Aborting', tag='Aborting') -SupportedRunStates.Aborted = SupportedRunStates._CF_enumeration.addEnumeration(unicode_value='Aborted', tag='Aborted') -SupportedRunStates.Terminated = SupportedRunStates._CF_enumeration.addEnumeration(unicode_value='Terminated', tag='Terminated') -SupportedRunStates.Completing = SupportedRunStates._CF_enumeration.addEnumeration(unicode_value='Completing', tag='Completing') -SupportedRunStates.Complete = SupportedRunStates._CF_enumeration.addEnumeration(unicode_value='Complete', tag='Complete') -SupportedRunStates.Paused = SupportedRunStates._CF_enumeration.addEnumeration(unicode_value='Paused', tag='Paused') -SupportedRunStates.Unknown = SupportedRunStates._CF_enumeration.addEnumeration(unicode_value='Unknown', tag='Unknown') -SupportedRunStates._InitializeFacetMap(SupportedRunStates._CF_enumeration) -Namespace.addCategoryObject('typeBinding', 'SupportedRunStates', SupportedRunStates) -_module_typeBindings.SupportedRunStates = SupportedRunStates - -# Atomic simple type: {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}SupportedChipTypes -class SupportedChipTypes (pyxb.binding.datatypes.string, pyxb.binding.basis.enumeration_mixin): - - """An atomic simple type.""" - - _ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'SupportedChipTypes') - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 900, 2) - _Documentation = None -SupportedChipTypes._CF_enumeration = pyxb.binding.facets.CF_enumeration(value_datatype=SupportedChipTypes, enum_prefix=None) -SupportedChipTypes.n1mChip = SupportedChipTypes._CF_enumeration.addEnumeration(unicode_value='1mChip', tag='n1mChip') -SupportedChipTypes.n8mChip = SupportedChipTypes._CF_enumeration.addEnumeration(unicode_value='8mChip', tag='n8mChip') -SupportedChipTypes.AllChips = SupportedChipTypes._CF_enumeration.addEnumeration(unicode_value='AllChips', tag='AllChips') -SupportedChipTypes._InitializeFacetMap(SupportedChipTypes._CF_enumeration) -Namespace.addCategoryObject('typeBinding', 'SupportedChipTypes', SupportedChipTypes) -_module_typeBindings.SupportedChipTypes = SupportedChipTypes - -# Atomic simple type: {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}SupportedCcsModes -class SupportedCcsModes (pyxb.binding.datatypes.string, pyxb.binding.basis.enumeration_mixin): - - """An atomic simple type.""" - - _ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'SupportedCcsModes') - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 907, 2) - _Documentation = None -SupportedCcsModes._CF_enumeration = pyxb.binding.facets.CF_enumeration(value_datatype=SupportedCcsModes, enum_prefix=None) -SupportedCcsModes.None_ = SupportedCcsModes._CF_enumeration.addEnumeration(unicode_value='None', tag='None_') -SupportedCcsModes.OnInstrument = SupportedCcsModes._CF_enumeration.addEnumeration(unicode_value='OnInstrument', tag='OnInstrument') -SupportedCcsModes.OffInstrument = SupportedCcsModes._CF_enumeration.addEnumeration(unicode_value='OffInstrument', tag='OffInstrument') -SupportedCcsModes._InitializeFacetMap(SupportedCcsModes._CF_enumeration) -Namespace.addCategoryObject('typeBinding', 'SupportedCcsModes', SupportedCcsModes) -_module_typeBindings.SupportedCcsModes = SupportedCcsModes - -# Atomic simple type: {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}SupportedFilterOperators -class SupportedFilterOperators (pyxb.binding.datatypes.string, pyxb.binding.basis.enumeration_mixin): - - """An atomic simple type.""" - - _ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'SupportedFilterOperators') - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 926, 2) - _Documentation = None -SupportedFilterOperators._CF_enumeration = pyxb.binding.facets.CF_enumeration(value_datatype=SupportedFilterOperators, enum_prefix=None) -SupportedFilterOperators.emptyString = SupportedFilterOperators._CF_enumeration.addEnumeration(unicode_value='==', tag='emptyString') -SupportedFilterOperators.emptyString_ = SupportedFilterOperators._CF_enumeration.addEnumeration(unicode_value='=', tag='emptyString_') -SupportedFilterOperators.eq = SupportedFilterOperators._CF_enumeration.addEnumeration(unicode_value='eq', tag='eq') -SupportedFilterOperators.emptyString_2 = SupportedFilterOperators._CF_enumeration.addEnumeration(unicode_value='!=', tag='emptyString_2') -SupportedFilterOperators.ne = SupportedFilterOperators._CF_enumeration.addEnumeration(unicode_value='ne', tag='ne') -SupportedFilterOperators.emptyString_3 = SupportedFilterOperators._CF_enumeration.addEnumeration(unicode_value='>=', tag='emptyString_3') -SupportedFilterOperators.gte = SupportedFilterOperators._CF_enumeration.addEnumeration(unicode_value='gte', tag='gte') -SupportedFilterOperators.emptyString_4 = SupportedFilterOperators._CF_enumeration.addEnumeration(unicode_value='<=', tag='emptyString_4') -SupportedFilterOperators.lte = SupportedFilterOperators._CF_enumeration.addEnumeration(unicode_value='lte', tag='lte') -SupportedFilterOperators.emptyString_5 = SupportedFilterOperators._CF_enumeration.addEnumeration(unicode_value='>', tag='emptyString_5') -SupportedFilterOperators.gt = SupportedFilterOperators._CF_enumeration.addEnumeration(unicode_value='gt', tag='gt') -SupportedFilterOperators.emptyString_6 = SupportedFilterOperators._CF_enumeration.addEnumeration(unicode_value='<', tag='emptyString_6') -SupportedFilterOperators.lt = SupportedFilterOperators._CF_enumeration.addEnumeration(unicode_value='lt', tag='lt') -SupportedFilterOperators.in_ = SupportedFilterOperators._CF_enumeration.addEnumeration(unicode_value='in', tag='in_') -SupportedFilterOperators.not_in = SupportedFilterOperators._CF_enumeration.addEnumeration(unicode_value='not_in', tag='not_in') -SupportedFilterOperators.emptyString_7 = SupportedFilterOperators._CF_enumeration.addEnumeration(unicode_value='&', tag='emptyString_7') -SupportedFilterOperators.emptyString_8 = SupportedFilterOperators._CF_enumeration.addEnumeration(unicode_value='~', tag='emptyString_8') -SupportedFilterOperators._InitializeFacetMap(SupportedFilterOperators._CF_enumeration) -Namespace.addCategoryObject('typeBinding', 'SupportedFilterOperators', SupportedFilterOperators) -_module_typeBindings.SupportedFilterOperators = SupportedFilterOperators - -# Atomic simple type: {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}SupportedFilterNames -class SupportedFilterNames (pyxb.binding.datatypes.string, pyxb.binding.basis.enumeration_mixin): - - """An atomic simple type.""" - - _ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'SupportedFilterNames') - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 947, 2) - _Documentation = None -SupportedFilterNames._CF_enumeration = pyxb.binding.facets.CF_enumeration(value_datatype=SupportedFilterNames, enum_prefix=None) -SupportedFilterNames.rname = SupportedFilterNames._CF_enumeration.addEnumeration(unicode_value='rname', tag='rname') -SupportedFilterNames.length = SupportedFilterNames._CF_enumeration.addEnumeration(unicode_value='length', tag='length') -SupportedFilterNames.qstart = SupportedFilterNames._CF_enumeration.addEnumeration(unicode_value='qstart', tag='qstart') -SupportedFilterNames.qend = SupportedFilterNames._CF_enumeration.addEnumeration(unicode_value='qend', tag='qend') -SupportedFilterNames.qname = SupportedFilterNames._CF_enumeration.addEnumeration(unicode_value='qname', tag='qname') -SupportedFilterNames.qid = SupportedFilterNames._CF_enumeration.addEnumeration(unicode_value='qid', tag='qid') -SupportedFilterNames.movie = SupportedFilterNames._CF_enumeration.addEnumeration(unicode_value='movie', tag='movie') -SupportedFilterNames.zm = SupportedFilterNames._CF_enumeration.addEnumeration(unicode_value='zm', tag='zm') -SupportedFilterNames.bc = SupportedFilterNames._CF_enumeration.addEnumeration(unicode_value='bc', tag='bc') -SupportedFilterNames.bcr = SupportedFilterNames._CF_enumeration.addEnumeration(unicode_value='bcr', tag='bcr') -SupportedFilterNames.bcf = SupportedFilterNames._CF_enumeration.addEnumeration(unicode_value='bcf', tag='bcf') -SupportedFilterNames.bcq = SupportedFilterNames._CF_enumeration.addEnumeration(unicode_value='bcq', tag='bcq') -SupportedFilterNames.bq = SupportedFilterNames._CF_enumeration.addEnumeration(unicode_value='bq', tag='bq') -SupportedFilterNames.qs = SupportedFilterNames._CF_enumeration.addEnumeration(unicode_value='qs', tag='qs') -SupportedFilterNames.rq = SupportedFilterNames._CF_enumeration.addEnumeration(unicode_value='rq', tag='rq') -SupportedFilterNames.pos = SupportedFilterNames._CF_enumeration.addEnumeration(unicode_value='pos', tag='pos') -SupportedFilterNames.tstart = SupportedFilterNames._CF_enumeration.addEnumeration(unicode_value='tstart', tag='tstart') -SupportedFilterNames.tend = SupportedFilterNames._CF_enumeration.addEnumeration(unicode_value='tend', tag='tend') -SupportedFilterNames.accuracy = SupportedFilterNames._CF_enumeration.addEnumeration(unicode_value='accuracy', tag='accuracy') -SupportedFilterNames.readstart = SupportedFilterNames._CF_enumeration.addEnumeration(unicode_value='readstart', tag='readstart') -SupportedFilterNames.cx = SupportedFilterNames._CF_enumeration.addEnumeration(unicode_value='cx', tag='cx') -SupportedFilterNames.n_subreads = SupportedFilterNames._CF_enumeration.addEnumeration(unicode_value='n_subreads', tag='n_subreads') -SupportedFilterNames.mapqv = SupportedFilterNames._CF_enumeration.addEnumeration(unicode_value='mapqv', tag='mapqv') -SupportedFilterNames._InitializeFacetMap(SupportedFilterNames._CF_enumeration) -Namespace.addCategoryObject('typeBinding', 'SupportedFilterNames', SupportedFilterNames) -_module_typeBindings.SupportedFilterNames = SupportedFilterNames - -# Atomic simple type: {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}SupportedHashAlgorithms -class SupportedHashAlgorithms (pyxb.binding.datatypes.string, pyxb.binding.basis.enumeration_mixin): - - """An atomic simple type.""" - - _ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'SupportedHashAlgorithms') - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 974, 2) - _Documentation = None -SupportedHashAlgorithms._CF_enumeration = pyxb.binding.facets.CF_enumeration(value_datatype=SupportedHashAlgorithms, enum_prefix=None) -SupportedHashAlgorithms.Uint32Cast = SupportedHashAlgorithms._CF_enumeration.addEnumeration(unicode_value='Uint32Cast', tag='Uint32Cast') -SupportedHashAlgorithms.BoostHashCombine = SupportedHashAlgorithms._CF_enumeration.addEnumeration(unicode_value='BoostHashCombine', tag='BoostHashCombine') -SupportedHashAlgorithms._InitializeFacetMap(SupportedHashAlgorithms._CF_enumeration) -Namespace.addCategoryObject('typeBinding', 'SupportedHashAlgorithms', SupportedHashAlgorithms) -_module_typeBindings.SupportedHashAlgorithms = SupportedHashAlgorithms - -# Complex type [anonymous] with content type ELEMENT_ONLY -class CTD_ANON (pyxb.binding.basis.complexTypeDefinition): - """A vector of probabilities, given in the order of increasing filter-bin wavelength, that light emitted by the analog will fall in the corresponding filter bin of the instrument detection system. By convention, the values are normalized to sum to 1.""" - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = None - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 14, 12) - _ElementMap = {} - _AttributeMap = {} - # Base type is pyxb.binding.datatypes.anyType - - # Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Values uses Python identifier Values - __Values = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Values'), 'Values', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_CTD_ANON_httppacificbiosciences_comPacBioBaseDataModel_xsdValues', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 16, 16), ) - - - Values = property(__Values.value, __Values.set, None, None) - - - # Attribute NumberFilterBins uses Python identifier NumberFilterBins - __NumberFilterBins = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'NumberFilterBins'), 'NumberFilterBins', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_CTD_ANON_NumberFilterBins', pyxb.binding.datatypes.int, required=True) - __NumberFilterBins._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 29, 14) - __NumberFilterBins._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 29, 14) - - NumberFilterBins = property(__NumberFilterBins.value, __NumberFilterBins.set, None, 'number of bins describing the spectrum, green to red') - - _ElementMap.update({ - __Values.name() : __Values - }) - _AttributeMap.update({ - __NumberFilterBins.name() : __NumberFilterBins - }) -_module_typeBindings.CTD_ANON = CTD_ANON - - -# Complex type [anonymous] with content type ELEMENT_ONLY -class CTD_ANON_ (pyxb.binding.basis.complexTypeDefinition): - """Complex type [anonymous] with content type ELEMENT_ONLY""" - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = None - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 17, 18) - _ElementMap = {} - _AttributeMap = {} - # Base type is pyxb.binding.datatypes.anyType - - # Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Value uses Python identifier Value - __Value = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Value'), 'Value', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_CTD_ANON__httppacificbiosciences_comPacBioBaseDataModel_xsdValue', True, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 19, 22), ) - - - Value = property(__Value.value, __Value.set, None, 'There should be as many values as specified in the Number of Filter Bins attribute.\nEach value is a probability, in the range of [0, 1].') - - _ElementMap.update({ - __Value.name() : __Value - }) - _AttributeMap.update({ - - }) -_module_typeBindings.CTD_ANON_ = CTD_ANON_ - - -# Complex type [anonymous] with content type ELEMENT_ONLY -class CTD_ANON_2 (pyxb.binding.basis.complexTypeDefinition): - """Complex type [anonymous] with content type ELEMENT_ONLY""" - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = None - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 99, 8) - _ElementMap = {} - _AttributeMap = {} - # Base type is pyxb.binding.datatypes.anyType - - # Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}ExtensionElement uses Python identifier ExtensionElement - __ExtensionElement = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'ExtensionElement'), 'ExtensionElement', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_CTD_ANON_2_httppacificbiosciences_comPacBioBaseDataModel_xsdExtensionElement', True, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 921, 2), ) - - - ExtensionElement = property(__ExtensionElement.value, __ExtensionElement.set, None, 'A generic element whose contents are undefined at the schema level. This is used to extend the data model.') - - _ElementMap.update({ - __ExtensionElement.name() : __ExtensionElement - }) - _AttributeMap.update({ - - }) -_module_typeBindings.CTD_ANON_2 = CTD_ANON_2 - - -# Complex type [anonymous] with content type ELEMENT_ONLY -class CTD_ANON_3 (pyxb.binding.basis.complexTypeDefinition): - """Pointer list to UniqueIds in the system""" - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = None - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 239, 4) - _ElementMap = {} - _AttributeMap = {} - # Base type is pyxb.binding.datatypes.anyType - - # Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}DataPointer uses Python identifier DataPointer - __DataPointer = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'DataPointer'), 'DataPointer', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_CTD_ANON_3_httppacificbiosciences_comPacBioBaseDataModel_xsdDataPointer', True, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 241, 8), ) - - - DataPointer = property(__DataPointer.value, __DataPointer.set, None, None) - - _ElementMap.update({ - __DataPointer.name() : __DataPointer - }) - _AttributeMap.update({ - - }) -_module_typeBindings.CTD_ANON_3 = CTD_ANON_3 - - -# Complex type [anonymous] with content type ELEMENT_ONLY -class CTD_ANON_4 (pyxb.binding.basis.complexTypeDefinition): - """Pointers to data that do not reside inside the parent structure""" - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = None - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 284, 4) - _ElementMap = {} - _AttributeMap = {} - # Base type is pyxb.binding.datatypes.anyType - - # Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}ExternalResource uses Python identifier ExternalResource - __ExternalResource = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'ExternalResource'), 'ExternalResource', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_CTD_ANON_4_httppacificbiosciences_comPacBioBaseDataModel_xsdExternalResource', True, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 1005, 2), ) - - - ExternalResource = property(__ExternalResource.value, __ExternalResource.set, None, 'for example, an output file could be the BAM file, which could be associated with multiple indices into it.') - - _ElementMap.update({ - __ExternalResource.name() : __ExternalResource - }) - _AttributeMap.update({ - - }) -_module_typeBindings.CTD_ANON_4 = CTD_ANON_4 - - -# Complex type [anonymous] with content type ELEMENT_ONLY -class CTD_ANON_5 (pyxb.binding.basis.complexTypeDefinition): - """Complex type [anonymous] with content type ELEMENT_ONLY""" - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = None - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 300, 12) - _ElementMap = {} - _AttributeMap = {} - # Base type is pyxb.binding.datatypes.anyType - - # Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}FileIndex uses Python identifier FileIndex - __FileIndex = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'FileIndex'), 'FileIndex', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_CTD_ANON_5_httppacificbiosciences_comPacBioBaseDataModel_xsdFileIndex', True, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 302, 16), ) - - - FileIndex = property(__FileIndex.value, __FileIndex.set, None, 'e.g. index for output files, allowing one to find information in the output file') - - _ElementMap.update({ - __FileIndex.name() : __FileIndex - }) - _AttributeMap.update({ - - }) -_module_typeBindings.CTD_ANON_5 = CTD_ANON_5 - - -# Complex type [anonymous] with content type ELEMENT_ONLY -class CTD_ANON_6 (pyxb.binding.basis.complexTypeDefinition): - """Complex type [anonymous] with content type ELEMENT_ONLY""" - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = None - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 320, 12) - _ElementMap = {} - _AttributeMap = {} - # Base type is pyxb.binding.datatypes.anyType - - # Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}AutomationParameter uses Python identifier AutomationParameter - __AutomationParameter = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'AutomationParameter'), 'AutomationParameter', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_CTD_ANON_6_httppacificbiosciences_comPacBioBaseDataModel_xsdAutomationParameter', True, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 356, 2), ) - - - AutomationParameter = property(__AutomationParameter.value, __AutomationParameter.set, None, 'One or more collection parameters, such as MovieLength, InsertSize, UseStageStart, IsControl, etc..') - - _ElementMap.update({ - __AutomationParameter.name() : __AutomationParameter - }) - _AttributeMap.update({ - - }) -_module_typeBindings.CTD_ANON_6 = CTD_ANON_6 - - -# Complex type [anonymous] with content type ELEMENT_ONLY -class CTD_ANON_7 (pyxb.binding.basis.complexTypeDefinition): - """Names of automations that are all similarly constrained""" - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = None - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 393, 12) - _ElementMap = {} - _AttributeMap = {} - # Base type is pyxb.binding.datatypes.anyType - - # Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Automation uses Python identifier Automation - __Automation = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Automation'), 'Automation', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_CTD_ANON_7_httppacificbiosciences_comPacBioBaseDataModel_xsdAutomation', True, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 395, 16), ) - - - Automation = property(__Automation.value, __Automation.set, None, None) - - _ElementMap.update({ - __Automation.name() : __Automation - }) - _AttributeMap.update({ - - }) -_module_typeBindings.CTD_ANON_7 = CTD_ANON_7 - - -# Complex type [anonymous] with content type ELEMENT_ONLY -class CTD_ANON_8 (pyxb.binding.basis.complexTypeDefinition): - """Complex type [anonymous] with content type ELEMENT_ONLY""" - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = None - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 512, 22) - _ElementMap = {} - _AttributeMap = {} - # Base type is pyxb.binding.datatypes.anyType - - # Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Analog uses Python identifier Analog - __Analog = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Analog'), 'Analog', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_CTD_ANON_8_httppacificbiosciences_comPacBioBaseDataModel_xsdAnalog', True, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 514, 26), ) - - - Analog = property(__Analog.value, __Analog.set, None, None) - - _ElementMap.update({ - __Analog.name() : __Analog - }) - _AttributeMap.update({ - - }) -_module_typeBindings.CTD_ANON_8 = CTD_ANON_8 - - -# Complex type [anonymous] with content type ELEMENT_ONLY -class CTD_ANON_9 (pyxb.binding.basis.complexTypeDefinition): - """Root element for document containing the container of analog set, SequencingChemistryConfig""" - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = None - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 531, 4) - _ElementMap = {} - _AttributeMap = {} - # Base type is pyxb.binding.datatypes.anyType - - # Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}ChemistryConfig uses Python identifier ChemistryConfig - __ChemistryConfig = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'ChemistryConfig'), 'ChemistryConfig', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_CTD_ANON_9_httppacificbiosciences_comPacBioBaseDataModel_xsdChemistryConfig', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 1044, 2), ) - - - ChemistryConfig = property(__ChemistryConfig.value, __ChemistryConfig.set, None, None) - - _ElementMap.update({ - __ChemistryConfig.name() : __ChemistryConfig - }) - _AttributeMap.update({ - - }) -_module_typeBindings.CTD_ANON_9 = CTD_ANON_9 - - -# Complex type [anonymous] with content type ELEMENT_ONLY -class CTD_ANON_10 (pyxb.binding.basis.complexTypeDefinition): - """Complex type [anonymous] with content type ELEMENT_ONLY""" - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = None - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 545, 12) - _ElementMap = {} - _AttributeMap = {} - # Base type is pyxb.binding.datatypes.anyType - - # Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Analog uses Python identifier Analog - __Analog = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Analog'), 'Analog', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_CTD_ANON_10_httppacificbiosciences_comPacBioBaseDataModel_xsdAnalog', True, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 547, 16), ) - - - Analog = property(__Analog.value, __Analog.set, None, None) - - _ElementMap.update({ - __Analog.name() : __Analog - }) - _AttributeMap.update({ - - }) -_module_typeBindings.CTD_ANON_10 = CTD_ANON_10 - - -# Complex type [anonymous] with content type EMPTY -class CTD_ANON_11 (pyxb.binding.basis.complexTypeDefinition): - """Complex type [anonymous] with content type EMPTY""" - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_EMPTY - _Abstract = False - _ExpandedName = None - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 567, 12) - _ElementMap = {} - _AttributeMap = {} - # Base type is pyxb.binding.datatypes.anyType - - # Attribute SNR_A uses Python identifier SNR_A - __SNR_A = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'SNR_A'), 'SNR_A', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_CTD_ANON_11_SNR_A', pyxb.binding.datatypes.float, required=True) - __SNR_A._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 568, 14) - __SNR_A._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 568, 14) - - SNR_A = property(__SNR_A.value, __SNR_A.set, None, None) - - - # Attribute SNR_C uses Python identifier SNR_C - __SNR_C = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'SNR_C'), 'SNR_C', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_CTD_ANON_11_SNR_C', pyxb.binding.datatypes.float, required=True) - __SNR_C._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 569, 14) - __SNR_C._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 569, 14) - - SNR_C = property(__SNR_C.value, __SNR_C.set, None, None) - - - # Attribute SNR_G uses Python identifier SNR_G - __SNR_G = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'SNR_G'), 'SNR_G', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_CTD_ANON_11_SNR_G', pyxb.binding.datatypes.float, required=True) - __SNR_G._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 570, 14) - __SNR_G._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 570, 14) - - SNR_G = property(__SNR_G.value, __SNR_G.set, None, None) - - - # Attribute SNR_T uses Python identifier SNR_T - __SNR_T = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'SNR_T'), 'SNR_T', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_CTD_ANON_11_SNR_T', pyxb.binding.datatypes.float, required=True) - __SNR_T._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 571, 14) - __SNR_T._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 571, 14) - - SNR_T = property(__SNR_T.value, __SNR_T.set, None, None) - - _ElementMap.update({ - - }) - _AttributeMap.update({ - __SNR_A.name() : __SNR_A, - __SNR_C.name() : __SNR_C, - __SNR_G.name() : __SNR_G, - __SNR_T.name() : __SNR_T - }) -_module_typeBindings.CTD_ANON_11 = CTD_ANON_11 - - -# Complex type [anonymous] with content type ELEMENT_ONLY -class CTD_ANON_12 (pyxb.binding.basis.complexTypeDefinition): - """The nominal or default spectrum of the reference analog under the chemistry and detection configuration. The spectrum is a vector of probabilities, given in the order of increasing filter-bin wavelength, that light emitted by the analog will fall in the corresponding filter bin of the instrument detection system. By convention, the values are normalized to sum to 1.""" - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = None - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 588, 12) - _ElementMap = {} - _AttributeMap = {} - # Base type is pyxb.binding.datatypes.anyType - - # Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Values uses Python identifier Values - __Values = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Values'), 'Values', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_CTD_ANON_12_httppacificbiosciences_comPacBioBaseDataModel_xsdValues', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 590, 16), ) - - - Values = property(__Values.value, __Values.set, None, None) - - - # Attribute NumberFilterBins uses Python identifier NumberFilterBins - __NumberFilterBins = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'NumberFilterBins'), 'NumberFilterBins', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_CTD_ANON_12_NumberFilterBins', pyxb.binding.datatypes.int, required=True) - __NumberFilterBins._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 605, 14) - __NumberFilterBins._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 605, 14) - - NumberFilterBins = property(__NumberFilterBins.value, __NumberFilterBins.set, None, 'number of bins describing the spectrum, green to red') - - _ElementMap.update({ - __Values.name() : __Values - }) - _AttributeMap.update({ - __NumberFilterBins.name() : __NumberFilterBins - }) -_module_typeBindings.CTD_ANON_12 = CTD_ANON_12 - - -# Complex type [anonymous] with content type ELEMENT_ONLY -class CTD_ANON_13 (pyxb.binding.basis.complexTypeDefinition): - """Complex type [anonymous] with content type ELEMENT_ONLY""" - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = None - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 591, 18) - _ElementMap = {} - _AttributeMap = {} - # Base type is pyxb.binding.datatypes.anyType - - # Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Value uses Python identifier Value - __Value = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Value'), 'Value', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_CTD_ANON_13_httppacificbiosciences_comPacBioBaseDataModel_xsdValue', True, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 593, 22), ) - - - Value = property(__Value.value, __Value.set, None, '\n\t\t\t\t There should be as many values as specified in the Number of Filter Bins attribute.\n\t\t\t\t Each value is a probability, in the range of [0, 1].\n\t\t\t\t ') - - _ElementMap.update({ - __Value.name() : __Value - }) - _AttributeMap.update({ - - }) -_module_typeBindings.CTD_ANON_13 = CTD_ANON_13 - - -# Complex type [anonymous] with content type ELEMENT_ONLY -class CTD_ANON_14 (pyxb.binding.basis.complexTypeDefinition): - """Complex type [anonymous] with content type ELEMENT_ONLY""" - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = None - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 636, 12) - _ElementMap = {} - _AttributeMap = {} - # Base type is pyxb.binding.datatypes.anyType - - # Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BinCount uses Python identifier BinCount - __BinCount = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'BinCount'), 'BinCount', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_CTD_ANON_14_httppacificbiosciences_comPacBioBaseDataModel_xsdBinCount', True, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 638, 16), ) - - - BinCount = property(__BinCount.value, __BinCount.set, None, None) - - _ElementMap.update({ - __BinCount.name() : __BinCount - }) - _AttributeMap.update({ - - }) -_module_typeBindings.CTD_ANON_14 = CTD_ANON_14 - - -# Complex type [anonymous] with content type ELEMENT_ONLY -class CTD_ANON_15 (pyxb.binding.basis.complexTypeDefinition): - """Complex type [anonymous] with content type ELEMENT_ONLY""" - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = None - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 662, 12) - _ElementMap = {} - _AttributeMap = {} - # Base type is pyxb.binding.datatypes.anyType - - # Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BinCount uses Python identifier BinCount - __BinCount = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'BinCount'), 'BinCount', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_CTD_ANON_15_httppacificbiosciences_comPacBioBaseDataModel_xsdBinCount', True, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 664, 16), ) - - - BinCount = property(__BinCount.value, __BinCount.set, None, None) - - _ElementMap.update({ - __BinCount.name() : __BinCount - }) - _AttributeMap.update({ - - }) -_module_typeBindings.CTD_ANON_15 = CTD_ANON_15 - - -# Complex type [anonymous] with content type ELEMENT_ONLY -class CTD_ANON_16 (pyxb.binding.basis.complexTypeDefinition): - """Complex type [anonymous] with content type ELEMENT_ONLY""" - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = None - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 670, 12) - _ElementMap = {} - _AttributeMap = {} - # Base type is pyxb.binding.datatypes.anyType - - # Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BinLabel uses Python identifier BinLabel - __BinLabel = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'BinLabel'), 'BinLabel', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_CTD_ANON_16_httppacificbiosciences_comPacBioBaseDataModel_xsdBinLabel', True, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 672, 16), ) - - - BinLabel = property(__BinLabel.value, __BinLabel.set, None, None) - - _ElementMap.update({ - __BinLabel.name() : __BinLabel - }) - _AttributeMap.update({ - - }) -_module_typeBindings.CTD_ANON_16 = CTD_ANON_16 - - -# Complex type [anonymous] with content type ELEMENT_ONLY -class CTD_ANON_17 (pyxb.binding.basis.complexTypeDefinition): - """Complex type [anonymous] with content type ELEMENT_ONLY""" - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = None - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 692, 12) - _ElementMap = {} - _AttributeMap = {} - # Base type is pyxb.binding.datatypes.anyType - - # Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Val uses Python identifier Val - __Val = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Val'), 'Val', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_CTD_ANON_17_httppacificbiosciences_comPacBioBaseDataModel_xsdVal', True, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 694, 16), ) - - - Val = property(__Val.value, __Val.set, None, None) - - _ElementMap.update({ - __Val.name() : __Val - }) - _AttributeMap.update({ - - }) -_module_typeBindings.CTD_ANON_17 = CTD_ANON_17 - - -# Complex type {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}UserDefinedFieldsType with content type ELEMENT_ONLY -class UserDefinedFieldsType (pyxb.binding.basis.complexTypeDefinition): - """Complex type {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}UserDefinedFieldsType with content type ELEMENT_ONLY""" - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'UserDefinedFieldsType') - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 914, 2) - _ElementMap = {} - _AttributeMap = {} - # Base type is pyxb.binding.datatypes.anyType - - # Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}DataEntities uses Python identifier DataEntities - __DataEntities = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'DataEntities'), 'DataEntities', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_UserDefinedFieldsType_httppacificbiosciences_comPacBioBaseDataModel_xsdDataEntities', True, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 916, 6), ) - - - DataEntities = property(__DataEntities.value, __DataEntities.set, None, None) - - _ElementMap.update({ - __DataEntities.name() : __DataEntities - }) - _AttributeMap.update({ - - }) -_module_typeBindings.UserDefinedFieldsType = UserDefinedFieldsType -Namespace.addCategoryObject('typeBinding', 'UserDefinedFieldsType', UserDefinedFieldsType) - - -# Complex type {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}FilterType with content type ELEMENT_ONLY -class FilterType (pyxb.binding.basis.complexTypeDefinition): - """Complex type {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}FilterType with content type ELEMENT_ONLY""" - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'FilterType') - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 980, 2) - _ElementMap = {} - _AttributeMap = {} - # Base type is pyxb.binding.datatypes.anyType - - # Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Properties uses Python identifier Properties - __Properties = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Properties'), 'Properties', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_FilterType_httppacificbiosciences_comPacBioBaseDataModel_xsdProperties', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 982, 6), ) - - - Properties = property(__Properties.value, __Properties.set, None, None) - - _ElementMap.update({ - __Properties.name() : __Properties - }) - _AttributeMap.update({ - - }) -_module_typeBindings.FilterType = FilterType -Namespace.addCategoryObject('typeBinding', 'FilterType', FilterType) - - -# Complex type [anonymous] with content type ELEMENT_ONLY -class CTD_ANON_18 (pyxb.binding.basis.complexTypeDefinition): - """Complex type [anonymous] with content type ELEMENT_ONLY""" - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = None - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 983, 8) - _ElementMap = {} - _AttributeMap = {} - # Base type is pyxb.binding.datatypes.anyType - - # Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Property uses Python identifier Property - __Property = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Property'), 'Property', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_CTD_ANON_18_httppacificbiosciences_comPacBioBaseDataModel_xsdProperty', True, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 985, 12), ) - - - Property = property(__Property.value, __Property.set, None, None) - - _ElementMap.update({ - __Property.name() : __Property - }) - _AttributeMap.update({ - - }) -_module_typeBindings.CTD_ANON_18 = CTD_ANON_18 - - -# Complex type {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}KeyValueMap with content type ELEMENT_ONLY -class KeyValueMap_ (pyxb.binding.basis.complexTypeDefinition): - """Complex type {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}KeyValueMap with content type ELEMENT_ONLY""" - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'KeyValueMap') - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 1017, 2) - _ElementMap = {} - _AttributeMap = {} - # Base type is pyxb.binding.datatypes.anyType - - # Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Items uses Python identifier Items - __Items = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Items'), 'Items', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_KeyValueMap__httppacificbiosciences_comPacBioBaseDataModel_xsdItems', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 1019, 6), ) - - - Items = property(__Items.value, __Items.set, None, None) - - _ElementMap.update({ - __Items.name() : __Items - }) - _AttributeMap.update({ - - }) -_module_typeBindings.KeyValueMap_ = KeyValueMap_ -Namespace.addCategoryObject('typeBinding', 'KeyValueMap', KeyValueMap_) - - -# Complex type [anonymous] with content type ELEMENT_ONLY -class CTD_ANON_19 (pyxb.binding.basis.complexTypeDefinition): - """Complex type [anonymous] with content type ELEMENT_ONLY""" - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = None - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 1020, 8) - _ElementMap = {} - _AttributeMap = {} - # Base type is pyxb.binding.datatypes.anyType - - # Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Item uses Python identifier Item - __Item = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Item'), 'Item', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_CTD_ANON_19_httppacificbiosciences_comPacBioBaseDataModel_xsdItem', True, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 1022, 12), ) - - - Item = property(__Item.value, __Item.set, None, None) - - _ElementMap.update({ - __Item.name() : __Item - }) - _AttributeMap.update({ - - }) -_module_typeBindings.CTD_ANON_19 = CTD_ANON_19 - - -# Complex type {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}MapType with content type ELEMENT_ONLY -class MapType (pyxb.binding.basis.complexTypeDefinition): - """Complex type {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}MapType with content type ELEMENT_ONLY""" - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'MapType') - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 1032, 2) - _ElementMap = {} - _AttributeMap = {} - # Base type is pyxb.binding.datatypes.anyType - - # Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}KeyValueMap uses Python identifier KeyValueMap - __KeyValueMap = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'KeyValueMap'), 'KeyValueMap', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_MapType_httppacificbiosciences_comPacBioBaseDataModel_xsdKeyValueMap', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 1034, 6), ) - - - KeyValueMap = property(__KeyValueMap.value, __KeyValueMap.set, None, None) - - _ElementMap.update({ - __KeyValueMap.name() : __KeyValueMap - }) - _AttributeMap.update({ - - }) -_module_typeBindings.MapType = MapType -Namespace.addCategoryObject('typeBinding', 'MapType', MapType) - - -# Complex type {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}MapItemType with content type ELEMENT_ONLY -class MapItemType (pyxb.binding.basis.complexTypeDefinition): - """Complex type {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}MapItemType with content type ELEMENT_ONLY""" - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'MapItemType') - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 1037, 2) - _ElementMap = {} - _AttributeMap = {} - # Base type is pyxb.binding.datatypes.anyType - - # Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Key uses Python identifier Key - __Key = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Key'), 'Key', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_MapItemType_httppacificbiosciences_comPacBioBaseDataModel_xsdKey', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 1039, 6), ) - - - Key = property(__Key.value, __Key.set, None, None) - - - # Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Value uses Python identifier Value - __Value = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Value'), 'Value', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_MapItemType_httppacificbiosciences_comPacBioBaseDataModel_xsdValue', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 1040, 6), ) - - - Value = property(__Value.value, __Value.set, None, None) - - - # Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Description uses Python identifier Description - __Description = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Description'), 'Description', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_MapItemType_httppacificbiosciences_comPacBioBaseDataModel_xsdDescription', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 1041, 6), ) - - - Description = property(__Description.value, __Description.set, None, None) - - _ElementMap.update({ - __Key.name() : __Key, - __Value.name() : __Value, - __Description.name() : __Description - }) - _AttributeMap.update({ - - }) -_module_typeBindings.MapItemType = MapItemType -Namespace.addCategoryObject('typeBinding', 'MapItemType', MapItemType) - - -# Complex type {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}DefaultsType with content type ELEMENT_ONLY -class DefaultsType (pyxb.binding.basis.complexTypeDefinition): - """A data type that allows the definition of default paramaters and filters. This structure may be applied to PartNumber types in order to constrain them via parameterization""" - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'DefaultsType') - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 1050, 2) - _ElementMap = {} - _AttributeMap = {} - # Base type is pyxb.binding.datatypes.anyType - - # Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}AutomationParameters uses Python identifier AutomationParameters - __AutomationParameters = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'AutomationParameters'), 'AutomationParameters', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_DefaultsType_httppacificbiosciences_comPacBioBaseDataModel_xsdAutomationParameters', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 1055, 6), ) - - - AutomationParameters = property(__AutomationParameters.value, __AutomationParameters.set, None, None) - - - # Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Filters uses Python identifier Filters - __Filters = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Filters'), 'Filters', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_DefaultsType_httppacificbiosciences_comPacBioBaseDataModel_xsdFilters', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 1062, 6), ) - - - Filters = property(__Filters.value, __Filters.set, None, None) - - _ElementMap.update({ - __AutomationParameters.name() : __AutomationParameters, - __Filters.name() : __Filters - }) - _AttributeMap.update({ - - }) -_module_typeBindings.DefaultsType = DefaultsType -Namespace.addCategoryObject('typeBinding', 'DefaultsType', DefaultsType) - - -# Complex type [anonymous] with content type ELEMENT_ONLY -class CTD_ANON_20 (pyxb.binding.basis.complexTypeDefinition): - """Complex type [anonymous] with content type ELEMENT_ONLY""" - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = None - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 1056, 8) - _ElementMap = {} - _AttributeMap = {} - # Base type is pyxb.binding.datatypes.anyType - - # Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}AutomationParameter uses Python identifier AutomationParameter - __AutomationParameter = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'AutomationParameter'), 'AutomationParameter', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_CTD_ANON_20_httppacificbiosciences_comPacBioBaseDataModel_xsdAutomationParameter', True, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 356, 2), ) - - - AutomationParameter = property(__AutomationParameter.value, __AutomationParameter.set, None, 'One or more collection parameters, such as MovieLength, InsertSize, UseStageStart, IsControl, etc..') - - _ElementMap.update({ - __AutomationParameter.name() : __AutomationParameter - }) - _AttributeMap.update({ - - }) -_module_typeBindings.CTD_ANON_20 = CTD_ANON_20 - - -# Complex type [anonymous] with content type ELEMENT_ONLY -class CTD_ANON_21 (pyxb.binding.basis.complexTypeDefinition): - """Complex type [anonymous] with content type ELEMENT_ONLY""" - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = None - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 1063, 8) - _ElementMap = {} - _AttributeMap = {} - # Base type is pyxb.binding.datatypes.anyType - - # Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Filter uses Python identifier Filter - __Filter = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Filter'), 'Filter', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_CTD_ANON_21_httppacificbiosciences_comPacBioBaseDataModel_xsdFilter', True, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 1065, 12), ) - - - Filter = property(__Filter.value, __Filter.set, None, None) - - _ElementMap.update({ - __Filter.name() : __Filter - }) - _AttributeMap.update({ - - }) -_module_typeBindings.CTD_ANON_21 = CTD_ANON_21 - - -# Complex type {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType with content type ELEMENT_ONLY -class BaseEntityType (pyxb.binding.basis.complexTypeDefinition): - """This is the base element type for all types in this data model""" - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'BaseEntityType') - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 93, 2) - _ElementMap = {} - _AttributeMap = {} - # Base type is pyxb.binding.datatypes.anyType - - # Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Extensions uses Python identifier Extensions - __Extensions = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Extensions'), 'Extensions', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_BaseEntityType_httppacificbiosciences_comPacBioBaseDataModel_xsdExtensions', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6), ) - - - Extensions = property(__Extensions.value, __Extensions.set, None, None) - - - # Attribute Name uses Python identifier Name - __Name = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'Name'), 'Name', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_BaseEntityType_Name', pyxb.binding.datatypes.string) - __Name._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 106, 4) - __Name._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 106, 4) - - Name = property(__Name.value, __Name.set, None, 'A short text identifier; uniqueness not necessary') - - - # Attribute Description uses Python identifier Description - __Description = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'Description'), 'Description', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_BaseEntityType_Description', pyxb.binding.datatypes.string) - __Description._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 111, 4) - __Description._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 111, 4) - - Description = property(__Description.value, __Description.set, None, 'A long text description of the object') - - - # Attribute Tags uses Python identifier Tags - __Tags = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'Tags'), 'Tags', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_BaseEntityType_Tags', pyxb.binding.datatypes.string) - __Tags._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 116, 4) - __Tags._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 116, 4) - - Tags = property(__Tags.value, __Tags.set, None, 'A set of keywords assigned to the object to help describe it and allow it to be found via search') - - - # Attribute Format uses Python identifier Format - __Format = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'Format'), 'Format', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_BaseEntityType_Format', pyxb.binding.datatypes.string) - __Format._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 121, 4) - __Format._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 121, 4) - - Format = property(__Format.value, __Format.set, None, 'Optional, but recommended. The MIME-Type of the referenced file. See http://www.iana.org/assignments/media-types/media-types.xhtml for examples') - - - # Attribute ResourceId uses Python identifier ResourceId - __ResourceId = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'ResourceId'), 'ResourceId', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_BaseEntityType_ResourceId', pyxb.binding.datatypes.anyURI) - __ResourceId._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 126, 4) - __ResourceId._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 126, 4) - - ResourceId = property(__ResourceId.value, __ResourceId.set, None, 'A uniform resource identifier used to identify a "web" resource. e.g. svc://run/acquisition/alignment/gridding') - - - # Attribute Version uses Python identifier Version - __Version = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'Version'), 'Version', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_BaseEntityType_Version', pyxb.binding.datatypes.string) - __Version._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 131, 4) - __Version._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 131, 4) - - Version = property(__Version.value, __Version.set, None, 'An optional identifier denoting the revision of this particular entity') - - - # Attribute CreatedAt uses Python identifier CreatedAt - __CreatedAt = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'CreatedAt'), 'CreatedAt', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_BaseEntityType_CreatedAt', _module_typeBindings.STD_ANON) - __CreatedAt._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 136, 4) - __CreatedAt._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 136, 4) - - CreatedAt = property(__CreatedAt.value, __CreatedAt.set, None, 'Timestamp designating the creation of this object, relative to UTC; millisecond precision is expected.') - - - # Attribute ModifiedAt uses Python identifier ModifiedAt - __ModifiedAt = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'ModifiedAt'), 'ModifiedAt', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_BaseEntityType_ModifiedAt', _module_typeBindings.STD_ANON_) - __ModifiedAt._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 144, 4) - __ModifiedAt._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 144, 4) - - ModifiedAt = property(__ModifiedAt.value, __ModifiedAt.set, None, 'Timestamp designating the modification of this object, relative to UTC; millisecond precision is expected.') - - _ElementMap.update({ - __Extensions.name() : __Extensions - }) - _AttributeMap.update({ - __Name.name() : __Name, - __Description.name() : __Description, - __Tags.name() : __Tags, - __Format.name() : __Format, - __ResourceId.name() : __ResourceId, - __Version.name() : __Version, - __CreatedAt.name() : __CreatedAt, - __ModifiedAt.name() : __ModifiedAt - }) -_module_typeBindings.BaseEntityType = BaseEntityType -Namespace.addCategoryObject('typeBinding', 'BaseEntityType', BaseEntityType) - - -# Complex type [anonymous] with content type EMPTY -class CTD_ANON_22 (pyxb.binding.basis.complexTypeDefinition): - """Complex type [anonymous] with content type EMPTY""" - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_EMPTY - _Abstract = False - _ExpandedName = None - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 986, 14) - _ElementMap = {} - _AttributeMap = {} - # Base type is pyxb.binding.datatypes.anyType - - # Attribute Name uses Python identifier Name - __Name = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'Name'), 'Name', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_CTD_ANON_22_Name', _module_typeBindings.SupportedFilterNames, required=True) - __Name._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 987, 16) - __Name._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 987, 16) - - Name = property(__Name.value, __Name.set, None, None) - - - # Attribute Value uses Python identifier Value - __Value = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'Value'), 'Value', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_CTD_ANON_22_Value', pyxb.binding.datatypes.string, required=True) - __Value._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 988, 16) - __Value._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 988, 16) - - Value = property(__Value.value, __Value.set, None, None) - - - # Attribute Operator uses Python identifier Operator - __Operator = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'Operator'), 'Operator', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_CTD_ANON_22_Operator', _module_typeBindings.SupportedFilterOperators, required=True) - __Operator._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 989, 16) - __Operator._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 989, 16) - - Operator = property(__Operator.value, __Operator.set, None, None) - - - # Attribute Hash uses Python identifier Hash - __Hash = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'Hash'), 'Hash', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_CTD_ANON_22_Hash', _module_typeBindings.SupportedHashAlgorithms) - __Hash._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 990, 16) - __Hash._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 990, 16) - - Hash = property(__Hash.value, __Hash.set, None, 'Hash algorithm to be used with Modulo below. Useful for e.g. downsampling by ZMW.') - - - # Attribute Modulo uses Python identifier Modulo - __Modulo = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'Modulo'), 'Modulo', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_CTD_ANON_22_Modulo', pyxb.binding.datatypes.string) - __Modulo._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 995, 16) - __Modulo._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 995, 16) - - Modulo = property(__Modulo.value, __Modulo.set, None, None) - - - # Attribute Feature uses Python identifier Feature - __Feature = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'Feature'), 'Feature', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_CTD_ANON_22_Feature', pyxb.binding.datatypes.string) - __Feature._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 996, 16) - __Feature._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 996, 16) - - Feature = property(__Feature.value, __Feature.set, None, None) - - - # Attribute Assignment uses Python identifier Assignment - __Assignment = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'Assignment'), 'Assignment', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_CTD_ANON_22_Assignment', pyxb.binding.datatypes.string) - __Assignment._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 997, 16) - __Assignment._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 997, 16) - - Assignment = property(__Assignment.value, __Assignment.set, None, None) - - _ElementMap.update({ - - }) - _AttributeMap.update({ - __Name.name() : __Name, - __Value.name() : __Value, - __Operator.name() : __Operator, - __Hash.name() : __Hash, - __Modulo.name() : __Modulo, - __Feature.name() : __Feature, - __Assignment.name() : __Assignment - }) -_module_typeBindings.CTD_ANON_22 = CTD_ANON_22 - - -# Complex type {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}AnalogType with content type ELEMENT_ONLY -class AnalogType (BaseEntityType): - """Complex type {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}AnalogType with content type ELEMENT_ONLY""" - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'AnalogType') - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 6, 2) - _ElementMap = BaseEntityType._ElementMap.copy() - _AttributeMap = BaseEntityType._AttributeMap.copy() - # Base type is BaseEntityType - - # Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Spectrum uses Python identifier Spectrum - __Spectrum = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Spectrum'), 'Spectrum', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_AnalogType_httppacificbiosciences_comPacBioBaseDataModel_xsdSpectrum', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 10, 10), ) - - - Spectrum = property(__Spectrum.value, __Spectrum.set, None, 'A vector of probabilities, given in the order of increasing filter-bin wavelength, that light emitted by the analog will fall in the corresponding filter bin of the instrument detection system. By convention, the values are normalized to sum to 1.') - - - # Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}RelativeAmplitude uses Python identifier RelativeAmplitude - __RelativeAmplitude = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'RelativeAmplitude'), 'RelativeAmplitude', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_AnalogType_httppacificbiosciences_comPacBioBaseDataModel_xsdRelativeAmplitude', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 36, 10), ) - - - RelativeAmplitude = property(__RelativeAmplitude.value, __RelativeAmplitude.set, None, 'Relative intensity of emission vs. a reference analog using standardized metrology – e.g., relative to the amplitude of the “542” analog as measured by the mean DWS pkMid on the Astro instrument.') - - - # Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}IntraPulseXsnCV uses Python identifier IntraPulseXsnCV - __IntraPulseXsnCV = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'IntraPulseXsnCV'), 'IntraPulseXsnCV', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_AnalogType_httppacificbiosciences_comPacBioBaseDataModel_xsdIntraPulseXsnCV', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 41, 10), ) - - - IntraPulseXsnCV = property(__IntraPulseXsnCV.value, __IntraPulseXsnCV.set, None, 'The 1-sigma fractional variation of the intra-pulse signal, independent of any Shot noise associated with that signal') - - - # Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}InterPulseXsnCV uses Python identifier InterPulseXsnCV - __InterPulseXsnCV = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'InterPulseXsnCV'), 'InterPulseXsnCV', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_AnalogType_httppacificbiosciences_comPacBioBaseDataModel_xsdInterPulseXsnCV', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 46, 10), ) - - - InterPulseXsnCV = property(__InterPulseXsnCV.value, __InterPulseXsnCV.set, None, 'The 1-sigma fractional variation, pulse-to-pulse, of the mean signal level (i.e., the pkMid).') - - - # Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Pw2SlowStepRatio uses Python identifier Pw2SlowStepRatio - __Pw2SlowStepRatio = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Pw2SlowStepRatio'), 'Pw2SlowStepRatio', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_AnalogType_httppacificbiosciences_comPacBioBaseDataModel_xsdPw2SlowStepRatio', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 51, 10), ) - - - Pw2SlowStepRatio = property(__Pw2SlowStepRatio.value, __Pw2SlowStepRatio.set, None, 'The pulse-width two slow-step ratio.') - - - # Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Ipd2SlowStepRatio uses Python identifier Ipd2SlowStepRatio - __Ipd2SlowStepRatio = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Ipd2SlowStepRatio'), 'Ipd2SlowStepRatio', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_AnalogType_httppacificbiosciences_comPacBioBaseDataModel_xsdIpd2SlowStepRatio', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 56, 10), ) - - - Ipd2SlowStepRatio = property(__Ipd2SlowStepRatio.value, __Ipd2SlowStepRatio.set, None, 'The inter-pulse distance (IPD) two slow-step ratio.') - - - # Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}DiffusionXsnCV uses Python identifier DiffusionXsnCV - __DiffusionXsnCV = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'DiffusionXsnCV'), 'DiffusionXsnCV', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_AnalogType_httppacificbiosciences_comPacBioBaseDataModel_xsdDiffusionXsnCV', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 61, 10), ) - - - DiffusionXsnCV = property(__DiffusionXsnCV.value, __DiffusionXsnCV.set, None, None) - - - # Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}PulseWidthMeanSeconds uses Python identifier PulseWidthMeanSeconds - __PulseWidthMeanSeconds = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'PulseWidthMeanSeconds'), 'PulseWidthMeanSeconds', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_AnalogType_httppacificbiosciences_comPacBioBaseDataModel_xsdPulseWidthMeanSeconds', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 62, 10), ) - - - PulseWidthMeanSeconds = property(__PulseWidthMeanSeconds.value, __PulseWidthMeanSeconds.set, None, None) - - - # Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}IpdMeanSeconds uses Python identifier IpdMeanSeconds - __IpdMeanSeconds = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'IpdMeanSeconds'), 'IpdMeanSeconds', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_AnalogType_httppacificbiosciences_comPacBioBaseDataModel_xsdIpdMeanSeconds', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 63, 10), ) - - - IpdMeanSeconds = property(__IpdMeanSeconds.value, __IpdMeanSeconds.set, None, None) - - - # Element Extensions ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Extensions) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Base uses Python identifier Base - __Base = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'Base'), 'Base', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_AnalogType_Base', _module_typeBindings.SupportedNucleotides) - __Base._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 65, 8) - __Base._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 65, 8) - - Base = property(__Base.value, __Base.set, None, 'The base label, A, C, T, or G') - - - # Attribute Nucleotide uses Python identifier Nucleotide - __Nucleotide = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'Nucleotide'), 'Nucleotide', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_AnalogType_Nucleotide', pyxb.binding.datatypes.string) - __Nucleotide._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 70, 8) - __Nucleotide._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 70, 8) - - Nucleotide = property(__Nucleotide.value, __Nucleotide.set, None, 'The type and number of nucleotides on a given analog. e.g. (dT6P)6') - - - # Attribute Wavelength uses Python identifier Wavelength - __Wavelength = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'Wavelength'), 'Wavelength', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_AnalogType_Wavelength', pyxb.binding.datatypes.float) - __Wavelength._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 75, 8) - __Wavelength._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 75, 8) - - Wavelength = property(__Wavelength.value, __Wavelength.set, None, 'The peak emission wavelength associated with the dye label in nm.') - - - # Attribute CompoundID uses Python identifier CompoundID - __CompoundID = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'CompoundID'), 'CompoundID', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_AnalogType_CompoundID', pyxb.binding.datatypes.string) - __CompoundID._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 80, 8) - __CompoundID._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 80, 8) - - CompoundID = property(__CompoundID.value, __CompoundID.set, None, 'Identification code of the final compound. The suffix ‘N’ should be used to distinguish these values from enzyme identifiers.\te.g. 5031N') - - - # Attribute LotID uses Python identifier LotID - __LotID = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'LotID'), 'LotID', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_AnalogType_LotID', pyxb.binding.datatypes.string) - __LotID._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 85, 8) - __LotID._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 85, 8) - - LotID = property(__LotID.value, __LotID.set, None, 'Identification code for the build of the final compound, written as initials/date, where date is written as YYYY-MM-DD.\te.g. js/2014-06-30') - - - # Attribute Name inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Description inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Tags inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Format inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ResourceId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Version inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute CreatedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ModifiedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - _ElementMap.update({ - __Spectrum.name() : __Spectrum, - __RelativeAmplitude.name() : __RelativeAmplitude, - __IntraPulseXsnCV.name() : __IntraPulseXsnCV, - __InterPulseXsnCV.name() : __InterPulseXsnCV, - __Pw2SlowStepRatio.name() : __Pw2SlowStepRatio, - __Ipd2SlowStepRatio.name() : __Ipd2SlowStepRatio, - __DiffusionXsnCV.name() : __DiffusionXsnCV, - __PulseWidthMeanSeconds.name() : __PulseWidthMeanSeconds, - __IpdMeanSeconds.name() : __IpdMeanSeconds - }) - _AttributeMap.update({ - __Base.name() : __Base, - __Nucleotide.name() : __Nucleotide, - __Wavelength.name() : __Wavelength, - __CompoundID.name() : __CompoundID, - __LotID.name() : __LotID - }) -_module_typeBindings.AnalogType = AnalogType -Namespace.addCategoryObject('typeBinding', 'AnalogType', AnalogType) - - -# Complex type {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType with content type ELEMENT_ONLY -class StrictEntityType (BaseEntityType): - """This is the base element type for all types in this data model""" - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'StrictEntityType') - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 153, 2) - _ElementMap = BaseEntityType._ElementMap.copy() - _AttributeMap = BaseEntityType._AttributeMap.copy() - # Base type is BaseEntityType - - # Element Extensions ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Extensions) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Name inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Description inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Tags inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Format inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ResourceId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Version inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute CreatedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ModifiedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute UniqueId uses Python identifier UniqueId - __UniqueId = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'UniqueId'), 'UniqueId', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_StrictEntityType_UniqueId', _module_typeBindings.STD_ANON_2, required=True) - __UniqueId._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 159, 8) - __UniqueId._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 159, 8) - - UniqueId = property(__UniqueId.value, __UniqueId.set, None, 'A unique identifier, such as a GUID - likely autogenerated') - - - # Attribute MetaType uses Python identifier MetaType - __MetaType = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'MetaType'), 'MetaType', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_StrictEntityType_MetaType', pyxb.binding.datatypes.string, required=True) - __MetaType._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 170, 8) - __MetaType._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 170, 8) - - MetaType = property(__MetaType.value, __MetaType.set, None, 'Controlled Vocabulary, meant as a means to group similar entities; the type of the object, e.g. Instrument Run, Secondary Run, Assay, Sample, Barcode, Alignment File, Alarm, Exception, Metric, SystemEvent, etc.') - - - # Attribute TimeStampedName uses Python identifier TimeStampedName - __TimeStampedName = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'TimeStampedName'), 'TimeStampedName', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_StrictEntityType_TimeStampedName', pyxb.binding.datatypes.string, required=True) - __TimeStampedName._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 175, 8) - __TimeStampedName._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 175, 8) - - TimeStampedName = property(__TimeStampedName.value, __TimeStampedName.set, None, 'This is NOT intended to be used as a unique field. For uniqueness, use UniqueId. In order to not utilize customer provided names, this attribute may be used as an alternative means of Human Readable ID, e.g. instrumentId-Run-150304_231155') - - _ElementMap.update({ - - }) - _AttributeMap.update({ - __UniqueId.name() : __UniqueId, - __MetaType.name() : __MetaType, - __TimeStampedName.name() : __TimeStampedName - }) -_module_typeBindings.StrictEntityType = StrictEntityType -Namespace.addCategoryObject('typeBinding', 'StrictEntityType', StrictEntityType) - - -# Complex type {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}DataEntityType with content type ELEMENT_ONLY -class DataEntityType (BaseEntityType): - """Extends BaseEntityType and adds a value element. The intent is to have only one of the value elements exist at any point in time; however, this is not enforced.""" - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'DataEntityType') - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 194, 2) - _ElementMap = BaseEntityType._ElementMap.copy() - _AttributeMap = BaseEntityType._AttributeMap.copy() - # Base type is BaseEntityType - - # Element Extensions ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Extensions) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}CheckSum uses Python identifier CheckSum - __CheckSum = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'CheckSum'), 'CheckSum', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_DataEntityType_httppacificbiosciences_comPacBioBaseDataModel_xsdCheckSum', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 206, 10), ) - - - CheckSum = property(__CheckSum.value, __CheckSum.set, None, 'small-size datum of the attached value for the purpose of detecting errors or modification which may have been introduced during its transmission or storage') - - - # Attribute Name inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Description inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Tags inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Format inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ResourceId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Version inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute CreatedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ModifiedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ValueDataType uses Python identifier ValueDataType - __ValueDataType = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'ValueDataType'), 'ValueDataType', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_DataEntityType_ValueDataType', _module_typeBindings.SupportedDataTypes, unicode_default='Object') - __ValueDataType._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 212, 8) - __ValueDataType._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 212, 8) - - ValueDataType = property(__ValueDataType.value, __ValueDataType.set, None, 'The datatype of the simple or encoded value. If not specified, a string is assumed.') - - - # Attribute SimpleValue uses Python identifier SimpleValue - __SimpleValue = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'SimpleValue'), 'SimpleValue', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_DataEntityType_SimpleValue', pyxb.binding.datatypes.anySimpleType) - __SimpleValue._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 217, 8) - __SimpleValue._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 217, 8) - - SimpleValue = property(__SimpleValue.value, __SimpleValue.set, None, 'A simple data type element, such as a string, int, float, etc.') - - - # Attribute MetaType uses Python identifier MetaType - __MetaType = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'MetaType'), 'MetaType', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_DataEntityType_MetaType', pyxb.binding.datatypes.string) - __MetaType._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 222, 8) - __MetaType._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 222, 8) - - MetaType = property(__MetaType.value, __MetaType.set, None, 'Controlled Vocabulary, meant as a means to group similar entities; the type of the object, e.g. Instrument Run, Secondary Run, Assay, Sample, Barcode, Alignment File, Alarm, Exception, Metric, SystemEvent, etc.') - - - # Attribute TimeStampedName uses Python identifier TimeStampedName - __TimeStampedName = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'TimeStampedName'), 'TimeStampedName', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_DataEntityType_TimeStampedName', pyxb.binding.datatypes.string) - __TimeStampedName._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 227, 8) - __TimeStampedName._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 227, 8) - - TimeStampedName = property(__TimeStampedName.value, __TimeStampedName.set, None, 'This is NOT intended to be used as a unique field. For uniqueness, use UniqueId. In order to not utilize customer provided names, this attribute may be used as an alternative means of Human Readable ID, e.g. instrumentId-Run-150304_231155') - - _ElementMap.update({ - __CheckSum.name() : __CheckSum - }) - _AttributeMap.update({ - __ValueDataType.name() : __ValueDataType, - __SimpleValue.name() : __SimpleValue, - __MetaType.name() : __MetaType, - __TimeStampedName.name() : __TimeStampedName - }) -_module_typeBindings.DataEntityType = DataEntityType -Namespace.addCategoryObject('typeBinding', 'DataEntityType', DataEntityType) - - -# Complex type {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}DNABarcode with content type ELEMENT_ONLY -class DNABarcode (BaseEntityType): - """Composite of uuid, sequence, and name""" - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'DNABarcode') - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 245, 2) - _ElementMap = BaseEntityType._ElementMap.copy() - _AttributeMap = BaseEntityType._AttributeMap.copy() - # Base type is BaseEntityType - - # Element Extensions ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Extensions) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Name inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Description inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Tags inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Format inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ResourceId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Version inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute CreatedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ModifiedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute DNASequence uses Python identifier DNASequence - __DNASequence = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'DNASequence'), 'DNASequence', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_DNABarcode_DNASequence', pyxb.binding.datatypes.anySimpleType) - __DNASequence._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 251, 8) - __DNASequence._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 251, 8) - - DNASequence = property(__DNASequence.value, __DNASequence.set, None, "This is the sample's DNA barcode") - - - # Attribute UniqueId uses Python identifier UniqueId - __UniqueId = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'UniqueId'), 'UniqueId', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_DNABarcode_UniqueId', _module_typeBindings.STD_ANON_3) - __UniqueId._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 256, 8) - __UniqueId._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 256, 8) - - UniqueId = property(__UniqueId.value, __UniqueId.set, None, "This is the sample's UUID. The run design dataModel creates UniqueIds for each DNABarcode starting in Locust. The UniqueIds are then assigned to each dataset produced from demultiplexing. The attribute is optional to preserve compatibility with pre-Locust datasets.") - - _ElementMap.update({ - - }) - _AttributeMap.update({ - __DNASequence.name() : __DNASequence, - __UniqueId.name() : __UniqueId - }) -_module_typeBindings.DNABarcode = DNABarcode -Namespace.addCategoryObject('typeBinding', 'DNABarcode', DNABarcode) - - -# Complex type {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}AutomationType with content type ELEMENT_ONLY -class AutomationType (BaseEntityType): - """Complex type {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}AutomationType with content type ELEMENT_ONLY""" - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'AutomationType') - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 315, 2) - _ElementMap = BaseEntityType._ElementMap.copy() - _AttributeMap = BaseEntityType._AttributeMap.copy() - # Base type is BaseEntityType - - # Element Extensions ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Extensions) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}AutomationParameters uses Python identifier AutomationParameters - __AutomationParameters = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'AutomationParameters'), 'AutomationParameters', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_AutomationType_httppacificbiosciences_comPacBioBaseDataModel_xsdAutomationParameters', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 319, 10), ) - - - AutomationParameters = property(__AutomationParameters.value, __AutomationParameters.set, None, None) - - - # Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Defaults uses Python identifier Defaults - __Defaults = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Defaults'), 'Defaults', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_AutomationType_httppacificbiosciences_comPacBioBaseDataModel_xsdDefaults', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 1045, 2), ) - - - Defaults = property(__Defaults.value, __Defaults.set, None, 'Default paramaters and filters which may be applied to PartNumber types in order to constrain them via parameterization') - - - # Attribute Name inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Description inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Tags inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Format inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ResourceId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Version inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute CreatedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ModifiedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute PartNumber uses Python identifier PartNumber - __PartNumber = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'PartNumber'), 'PartNumber', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_AutomationType_PartNumber', pyxb.binding.datatypes.string) - __PartNumber._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 328, 8) - __PartNumber._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 328, 8) - - PartNumber = property(__PartNumber.value, __PartNumber.set, None, 'Defines a part number, mainly for use in defining incompatibility with other PB kit PNs, if necessary') - - - # Attribute IsRestricted uses Python identifier IsRestricted - __IsRestricted = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'IsRestricted'), 'IsRestricted', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_AutomationType_IsRestricted', pyxb.binding.datatypes.boolean, unicode_default='false') - __IsRestricted._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 333, 8) - __IsRestricted._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 333, 8) - - IsRestricted = property(__IsRestricted.value, __IsRestricted.set, None, 'Allows for an automation to be marked for internal use or by admin users only') - - - # Attribute IsObsolete uses Python identifier IsObsolete - __IsObsolete = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'IsObsolete'), 'IsObsolete', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_AutomationType_IsObsolete', pyxb.binding.datatypes.boolean, unicode_default='false') - __IsObsolete._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 338, 8) - __IsObsolete._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 338, 8) - - IsObsolete = property(__IsObsolete.value, __IsObsolete.set, None, 'Allows for an automation to be marked as obsolete') - - - # Attribute ChipType uses Python identifier ChipType - __ChipType = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'ChipType'), 'ChipType', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_AutomationType_ChipType', _module_typeBindings.SupportedChipTypes, unicode_default='AllChips') - __ChipType._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 343, 8) - __ChipType._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 343, 8) - - ChipType = property(__ChipType.value, __ChipType.set, None, 'Chip platform supported by this automation type') - - - # Attribute IsDefault uses Python identifier IsDefault - __IsDefault = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'IsDefault'), 'IsDefault', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_AutomationType_IsDefault', pyxb.binding.datatypes.boolean, unicode_default='false') - __IsDefault._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 348, 8) - __IsDefault._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 348, 8) - - IsDefault = property(__IsDefault.value, __IsDefault.set, None, "Allows for an automation to be marked as a default for a kit with which it's compatible") - - _ElementMap.update({ - __AutomationParameters.name() : __AutomationParameters, - __Defaults.name() : __Defaults - }) - _AttributeMap.update({ - __PartNumber.name() : __PartNumber, - __IsRestricted.name() : __IsRestricted, - __IsObsolete.name() : __IsObsolete, - __ChipType.name() : __ChipType, - __IsDefault.name() : __IsDefault - }) -_module_typeBindings.AutomationType = AutomationType -Namespace.addCategoryObject('typeBinding', 'AutomationType', AutomationType) - - -# Complex type {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}IncompatiblePairType with content type ELEMENT_ONLY -class IncompatiblePairType (BaseEntityType): - """Describes a bidirectional incompatibility between part numbers. - -By default, any PN is compatible for use with other PNs in the system. In order to exclude the usage of one or more PNs with this one, the pairwise incompatible PNs are listed here.""" - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'IncompatiblePairType') - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 361, 2) - _ElementMap = BaseEntityType._ElementMap.copy() - _AttributeMap = BaseEntityType._AttributeMap.copy() - # Base type is BaseEntityType - - # Element Extensions ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Extensions) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Name inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Description inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Tags inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Format inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ResourceId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Version inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute CreatedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ModifiedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute PartA uses Python identifier PartA - __PartA = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'PartA'), 'PartA', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_IncompatiblePairType_PartA', pyxb.binding.datatypes.string, required=True) - __PartA._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 369, 8) - __PartA._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 369, 8) - - PartA = property(__PartA.value, __PartA.set, None, "An automation or kit Part Number that's incompatible with Part Number B") - - - # Attribute PartB uses Python identifier PartB - __PartB = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'PartB'), 'PartB', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_IncompatiblePairType_PartB', pyxb.binding.datatypes.string, required=True) - __PartB._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 374, 8) - __PartB._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 374, 8) - - PartB = property(__PartB.value, __PartB.set, None, "An automation or kit Part Number that's incompatible with Part Number A") - - _ElementMap.update({ - - }) - _AttributeMap.update({ - __PartA.name() : __PartA, - __PartB.name() : __PartB - }) -_module_typeBindings.IncompatiblePairType = IncompatiblePairType -Namespace.addCategoryObject('typeBinding', 'IncompatiblePairType', IncompatiblePairType) - - -# Complex type {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}AutomationConstraintType with content type ELEMENT_ONLY -class AutomationConstraintType (BaseEntityType): - """This data type defines constraints that an automation has. The information here, along with the availability of an exclusionary list of automations in the PartNumberType, allows for defining a robust compatibility matrix.""" - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'AutomationConstraintType') - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 382, 2) - _ElementMap = BaseEntityType._ElementMap.copy() - _AttributeMap = BaseEntityType._AttributeMap.copy() - # Base type is BaseEntityType - - # Element Extensions ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Extensions) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Automations uses Python identifier Automations - __Automations = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Automations'), 'Automations', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_AutomationConstraintType_httppacificbiosciences_comPacBioBaseDataModel_xsdAutomations', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 389, 10), ) - - - Automations = property(__Automations.value, __Automations.set, None, 'Names of automations that are all similarly constrained') - - - # Attribute Name inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Description inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Tags inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Format inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ResourceId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Version inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute CreatedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ModifiedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute SupportsCellReuse uses Python identifier SupportsCellReuse - __SupportsCellReuse = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'SupportsCellReuse'), 'SupportsCellReuse', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_AutomationConstraintType_SupportsCellReuse', pyxb.binding.datatypes.boolean) - __SupportsCellReuse._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 400, 8) - __SupportsCellReuse._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 400, 8) - - SupportsCellReuse = property(__SupportsCellReuse.value, __SupportsCellReuse.set, None, 'Does this automation support cell reuse?') - - - # Attribute SupportsStageStart uses Python identifier SupportsStageStart - __SupportsStageStart = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'SupportsStageStart'), 'SupportsStageStart', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_AutomationConstraintType_SupportsStageStart', pyxb.binding.datatypes.boolean) - __SupportsStageStart._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 405, 8) - __SupportsStageStart._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 405, 8) - - SupportsStageStart = property(__SupportsStageStart.value, __SupportsStageStart.set, None, 'Does this automation support hot-start on the stage?') - - - # Attribute SupportsDynamicLoading uses Python identifier SupportsDynamicLoading - __SupportsDynamicLoading = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'SupportsDynamicLoading'), 'SupportsDynamicLoading', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_AutomationConstraintType_SupportsDynamicLoading', pyxb.binding.datatypes.boolean) - __SupportsDynamicLoading._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 410, 8) - __SupportsDynamicLoading._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 410, 8) - - SupportsDynamicLoading = property(__SupportsDynamicLoading.value, __SupportsDynamicLoading.set, None, 'Does this automation support dynamic loading?') - - - # Attribute MaxCollectionsPerCell uses Python identifier MaxCollectionsPerCell - __MaxCollectionsPerCell = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'MaxCollectionsPerCell'), 'MaxCollectionsPerCell', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_AutomationConstraintType_MaxCollectionsPerCell', pyxb.binding.datatypes.int) - __MaxCollectionsPerCell._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 415, 8) - __MaxCollectionsPerCell._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 415, 8) - - MaxCollectionsPerCell = property(__MaxCollectionsPerCell.value, __MaxCollectionsPerCell.set, None, 'If cell reuse is supported (i.e. above attribute is true) how many times can the cell be reused?') - - - # Attribute MinMovieLength uses Python identifier MinMovieLength - __MinMovieLength = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'MinMovieLength'), 'MinMovieLength', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_AutomationConstraintType_MinMovieLength', pyxb.binding.datatypes.int) - __MinMovieLength._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 420, 8) - __MinMovieLength._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 420, 8) - - MinMovieLength = property(__MinMovieLength.value, __MinMovieLength.set, None, 'Minimum length of movie acquisition') - - - # Attribute MaxMovieLength uses Python identifier MaxMovieLength - __MaxMovieLength = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'MaxMovieLength'), 'MaxMovieLength', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_AutomationConstraintType_MaxMovieLength', pyxb.binding.datatypes.int) - __MaxMovieLength._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 425, 8) - __MaxMovieLength._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 425, 8) - - MaxMovieLength = property(__MaxMovieLength.value, __MaxMovieLength.set, None, 'Maximum length of movie acquisition') - - - # Attribute MinInsertSize uses Python identifier MinInsertSize - __MinInsertSize = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'MinInsertSize'), 'MinInsertSize', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_AutomationConstraintType_MinInsertSize', pyxb.binding.datatypes.int) - __MinInsertSize._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 430, 8) - __MinInsertSize._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 430, 8) - - MinInsertSize = property(__MinInsertSize.value, __MinInsertSize.set, None, 'Minimum recommended insert size') - - - # Attribute MaxInsertSize uses Python identifier MaxInsertSize - __MaxInsertSize = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'MaxInsertSize'), 'MaxInsertSize', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_AutomationConstraintType_MaxInsertSize', pyxb.binding.datatypes.int) - __MaxInsertSize._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 435, 8) - __MaxInsertSize._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 435, 8) - - MaxInsertSize = property(__MaxInsertSize.value, __MaxInsertSize.set, None, 'Maximum recommended insert size') - - - # Attribute ChipType uses Python identifier ChipType - __ChipType = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'ChipType'), 'ChipType', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_AutomationConstraintType_ChipType', _module_typeBindings.SupportedChipTypes, unicode_default='AllChips') - __ChipType._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 440, 8) - __ChipType._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 440, 8) - - ChipType = property(__ChipType.value, __ChipType.set, None, 'Chip platform supported by this automation, for example MagBead is 1m only') - - _ElementMap.update({ - __Automations.name() : __Automations - }) - _AttributeMap.update({ - __SupportsCellReuse.name() : __SupportsCellReuse, - __SupportsStageStart.name() : __SupportsStageStart, - __SupportsDynamicLoading.name() : __SupportsDynamicLoading, - __MaxCollectionsPerCell.name() : __MaxCollectionsPerCell, - __MinMovieLength.name() : __MinMovieLength, - __MaxMovieLength.name() : __MaxMovieLength, - __MinInsertSize.name() : __MinInsertSize, - __MaxInsertSize.name() : __MaxInsertSize, - __ChipType.name() : __ChipType - }) -_module_typeBindings.AutomationConstraintType = AutomationConstraintType -Namespace.addCategoryObject('typeBinding', 'AutomationConstraintType', AutomationConstraintType) - - -# Complex type [anonymous] with content type ELEMENT_ONLY -class CTD_ANON_23 (BaseEntityType): - """Complex type [anonymous] with content type ELEMENT_ONLY""" - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = None - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 507, 12) - _ElementMap = BaseEntityType._ElementMap.copy() - _AttributeMap = BaseEntityType._AttributeMap.copy() - # Base type is BaseEntityType - - # Element Extensions ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Extensions) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Analogs uses Python identifier Analogs - __Analogs = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Analogs'), 'Analogs', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_CTD_ANON_23_httppacificbiosciences_comPacBioBaseDataModel_xsdAnalogs', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 511, 20), ) - - - Analogs = property(__Analogs.value, __Analogs.set, None, None) - - - # Attribute Name inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Description inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Tags inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Format inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ResourceId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Version inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute CreatedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ModifiedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - _ElementMap.update({ - __Analogs.name() : __Analogs - }) - _AttributeMap.update({ - - }) -_module_typeBindings.CTD_ANON_23 = CTD_ANON_23 - - -# Complex type {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StatsContinuousDistType with content type ELEMENT_ONLY -class StatsContinuousDistType (BaseEntityType): - """Continuous distribution class""" - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'StatsContinuousDistType') - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 621, 2) - _ElementMap = BaseEntityType._ElementMap.copy() - _AttributeMap = BaseEntityType._AttributeMap.copy() - # Base type is BaseEntityType - - # Element Extensions ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Extensions) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}SampleSize uses Python identifier SampleSize - __SampleSize = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'SampleSize'), 'SampleSize', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_StatsContinuousDistType_httppacificbiosciences_comPacBioBaseDataModel_xsdSampleSize', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 628, 10), ) - - - SampleSize = property(__SampleSize.value, __SampleSize.set, None, None) - - - # Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}SampleMean uses Python identifier SampleMean - __SampleMean = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'SampleMean'), 'SampleMean', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_StatsContinuousDistType_httppacificbiosciences_comPacBioBaseDataModel_xsdSampleMean', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 629, 10), ) - - - SampleMean = property(__SampleMean.value, __SampleMean.set, None, None) - - - # Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}SampleMed uses Python identifier SampleMed - __SampleMed = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'SampleMed'), 'SampleMed', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_StatsContinuousDistType_httppacificbiosciences_comPacBioBaseDataModel_xsdSampleMed', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 630, 10), ) - - - SampleMed = property(__SampleMed.value, __SampleMed.set, None, None) - - - # Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}SampleStd uses Python identifier SampleStd - __SampleStd = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'SampleStd'), 'SampleStd', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_StatsContinuousDistType_httppacificbiosciences_comPacBioBaseDataModel_xsdSampleStd', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 631, 10), ) - - - SampleStd = property(__SampleStd.value, __SampleStd.set, None, None) - - - # Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Sample95thPct uses Python identifier Sample95thPct - __Sample95thPct = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Sample95thPct'), 'Sample95thPct', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_StatsContinuousDistType_httppacificbiosciences_comPacBioBaseDataModel_xsdSample95thPct', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 632, 10), ) - - - Sample95thPct = property(__Sample95thPct.value, __Sample95thPct.set, None, None) - - - # Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}SampleN50 uses Python identifier SampleN50 - __SampleN50 = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'SampleN50'), 'SampleN50', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_StatsContinuousDistType_httppacificbiosciences_comPacBioBaseDataModel_xsdSampleN50', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 633, 10), ) - - - SampleN50 = property(__SampleN50.value, __SampleN50.set, None, None) - - - # Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}NumBins uses Python identifier NumBins - __NumBins = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'NumBins'), 'NumBins', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_StatsContinuousDistType_httppacificbiosciences_comPacBioBaseDataModel_xsdNumBins', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 634, 10), ) - - - NumBins = property(__NumBins.value, __NumBins.set, None, None) - - - # Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BinCounts uses Python identifier BinCounts - __BinCounts = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'BinCounts'), 'BinCounts', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_StatsContinuousDistType_httppacificbiosciences_comPacBioBaseDataModel_xsdBinCounts', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 635, 10), ) - - - BinCounts = property(__BinCounts.value, __BinCounts.set, None, None) - - - # Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BinWidth uses Python identifier BinWidth - __BinWidth = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'BinWidth'), 'BinWidth', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_StatsContinuousDistType_httppacificbiosciences_comPacBioBaseDataModel_xsdBinWidth', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 642, 10), ) - - - BinWidth = property(__BinWidth.value, __BinWidth.set, None, None) - - - # Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}MinOutlierValue uses Python identifier MinOutlierValue - __MinOutlierValue = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'MinOutlierValue'), 'MinOutlierValue', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_StatsContinuousDistType_httppacificbiosciences_comPacBioBaseDataModel_xsdMinOutlierValue', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 643, 10), ) - - - MinOutlierValue = property(__MinOutlierValue.value, __MinOutlierValue.set, None, None) - - - # Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}MinBinValue uses Python identifier MinBinValue - __MinBinValue = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'MinBinValue'), 'MinBinValue', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_StatsContinuousDistType_httppacificbiosciences_comPacBioBaseDataModel_xsdMinBinValue', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 644, 10), ) - - - MinBinValue = property(__MinBinValue.value, __MinBinValue.set, None, None) - - - # Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}MaxBinValue uses Python identifier MaxBinValue - __MaxBinValue = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'MaxBinValue'), 'MaxBinValue', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_StatsContinuousDistType_httppacificbiosciences_comPacBioBaseDataModel_xsdMaxBinValue', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 645, 10), ) - - - MaxBinValue = property(__MaxBinValue.value, __MaxBinValue.set, None, None) - - - # Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}MaxOutlierValue uses Python identifier MaxOutlierValue - __MaxOutlierValue = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'MaxOutlierValue'), 'MaxOutlierValue', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_StatsContinuousDistType_httppacificbiosciences_comPacBioBaseDataModel_xsdMaxOutlierValue', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 646, 10), ) - - - MaxOutlierValue = property(__MaxOutlierValue.value, __MaxOutlierValue.set, None, None) - - - # Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}MetricDescription uses Python identifier MetricDescription - __MetricDescription = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'MetricDescription'), 'MetricDescription', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_StatsContinuousDistType_httppacificbiosciences_comPacBioBaseDataModel_xsdMetricDescription', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 647, 10), ) - - - MetricDescription = property(__MetricDescription.value, __MetricDescription.set, None, None) - - - # Attribute Name inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Description inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Tags inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Format inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ResourceId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Version inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute CreatedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ModifiedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Channel uses Python identifier Channel - __Channel = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'Channel'), 'Channel', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_StatsContinuousDistType_Channel', pyxb.binding.datatypes.string) - __Channel._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 649, 8) - __Channel._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 649, 8) - - Channel = property(__Channel.value, __Channel.set, None, None) - - _ElementMap.update({ - __SampleSize.name() : __SampleSize, - __SampleMean.name() : __SampleMean, - __SampleMed.name() : __SampleMed, - __SampleStd.name() : __SampleStd, - __Sample95thPct.name() : __Sample95thPct, - __SampleN50.name() : __SampleN50, - __NumBins.name() : __NumBins, - __BinCounts.name() : __BinCounts, - __BinWidth.name() : __BinWidth, - __MinOutlierValue.name() : __MinOutlierValue, - __MinBinValue.name() : __MinBinValue, - __MaxBinValue.name() : __MaxBinValue, - __MaxOutlierValue.name() : __MaxOutlierValue, - __MetricDescription.name() : __MetricDescription - }) - _AttributeMap.update({ - __Channel.name() : __Channel - }) -_module_typeBindings.StatsContinuousDistType = StatsContinuousDistType -Namespace.addCategoryObject('typeBinding', 'StatsContinuousDistType', StatsContinuousDistType) - - -# Complex type {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StatsDiscreteDistType with content type ELEMENT_ONLY -class StatsDiscreteDistType (BaseEntityType): - """Discrete distribution class""" - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'StatsDiscreteDistType') - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 653, 2) - _ElementMap = BaseEntityType._ElementMap.copy() - _AttributeMap = BaseEntityType._AttributeMap.copy() - # Base type is BaseEntityType - - # Element Extensions ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Extensions) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}NumBins uses Python identifier NumBins - __NumBins = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'NumBins'), 'NumBins', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_StatsDiscreteDistType_httppacificbiosciences_comPacBioBaseDataModel_xsdNumBins', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 660, 10), ) - - - NumBins = property(__NumBins.value, __NumBins.set, None, None) - - - # Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BinCounts uses Python identifier BinCounts - __BinCounts = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'BinCounts'), 'BinCounts', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_StatsDiscreteDistType_httppacificbiosciences_comPacBioBaseDataModel_xsdBinCounts', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 661, 10), ) - - - BinCounts = property(__BinCounts.value, __BinCounts.set, None, None) - - - # Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}MetricDescription uses Python identifier MetricDescription - __MetricDescription = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'MetricDescription'), 'MetricDescription', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_StatsDiscreteDistType_httppacificbiosciences_comPacBioBaseDataModel_xsdMetricDescription', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 668, 10), ) - - - MetricDescription = property(__MetricDescription.value, __MetricDescription.set, None, None) - - - # Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BinLabels uses Python identifier BinLabels - __BinLabels = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'BinLabels'), 'BinLabels', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_StatsDiscreteDistType_httppacificbiosciences_comPacBioBaseDataModel_xsdBinLabels', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 669, 10), ) - - - BinLabels = property(__BinLabels.value, __BinLabels.set, None, None) - - - # Attribute Name inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Description inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Tags inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Format inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ResourceId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Version inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute CreatedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ModifiedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - _ElementMap.update({ - __NumBins.name() : __NumBins, - __BinCounts.name() : __BinCounts, - __MetricDescription.name() : __MetricDescription, - __BinLabels.name() : __BinLabels - }) - _AttributeMap.update({ - - }) -_module_typeBindings.StatsDiscreteDistType = StatsDiscreteDistType -Namespace.addCategoryObject('typeBinding', 'StatsDiscreteDistType', StatsDiscreteDistType) - - -# Complex type {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StatsTimeSeriesType with content type ELEMENT_ONLY -class StatsTimeSeriesType (BaseEntityType): - """Time series (for time-dependent metrics)""" - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'StatsTimeSeriesType') - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 680, 2) - _ElementMap = BaseEntityType._ElementMap.copy() - _AttributeMap = BaseEntityType._AttributeMap.copy() - # Base type is BaseEntityType - - # Element Extensions ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Extensions) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}TimeUnits uses Python identifier TimeUnits - __TimeUnits = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'TimeUnits'), 'TimeUnits', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_StatsTimeSeriesType_httppacificbiosciences_comPacBioBaseDataModel_xsdTimeUnits', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 687, 10), ) - - - TimeUnits = property(__TimeUnits.value, __TimeUnits.set, None, None) - - - # Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}ValueUnits uses Python identifier ValueUnits - __ValueUnits = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'ValueUnits'), 'ValueUnits', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_StatsTimeSeriesType_httppacificbiosciences_comPacBioBaseDataModel_xsdValueUnits', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 688, 10), ) - - - ValueUnits = property(__ValueUnits.value, __ValueUnits.set, None, None) - - - # Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StartTime uses Python identifier StartTime - __StartTime = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'StartTime'), 'StartTime', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_StatsTimeSeriesType_httppacificbiosciences_comPacBioBaseDataModel_xsdStartTime', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 689, 10), ) - - - StartTime = property(__StartTime.value, __StartTime.set, None, None) - - - # Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}MeasInterval uses Python identifier MeasInterval - __MeasInterval = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'MeasInterval'), 'MeasInterval', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_StatsTimeSeriesType_httppacificbiosciences_comPacBioBaseDataModel_xsdMeasInterval', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 690, 10), ) - - - MeasInterval = property(__MeasInterval.value, __MeasInterval.set, None, None) - - - # Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Values uses Python identifier Values - __Values = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Values'), 'Values', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_StatsTimeSeriesType_httppacificbiosciences_comPacBioBaseDataModel_xsdValues', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 691, 10), ) - - - Values = property(__Values.value, __Values.set, None, None) - - - # Attribute Name inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Description inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Tags inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Format inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ResourceId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Version inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute CreatedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ModifiedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - _ElementMap.update({ - __TimeUnits.name() : __TimeUnits, - __ValueUnits.name() : __ValueUnits, - __StartTime.name() : __StartTime, - __MeasInterval.name() : __MeasInterval, - __Values.name() : __Values - }) - _AttributeMap.update({ - - }) -_module_typeBindings.StatsTimeSeriesType = StatsTimeSeriesType -Namespace.addCategoryObject('typeBinding', 'StatsTimeSeriesType', StatsTimeSeriesType) - - -# Complex type [anonymous] with content type ELEMENT_ONLY -class CTD_ANON_24 (AnalogType): - """An unlimited number of analogs listed for the purposes of hosting in a configuration file. e.g. a list of all possible analogs on the system""" - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = None - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 187, 4) - _ElementMap = AnalogType._ElementMap.copy() - _AttributeMap = AnalogType._AttributeMap.copy() - # Base type is AnalogType - - # Element Spectrum ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Spectrum) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}AnalogType - - # Element RelativeAmplitude ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}RelativeAmplitude) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}AnalogType - - # Element IntraPulseXsnCV ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}IntraPulseXsnCV) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}AnalogType - - # Element InterPulseXsnCV ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}InterPulseXsnCV) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}AnalogType - - # Element Pw2SlowStepRatio ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Pw2SlowStepRatio) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}AnalogType - - # Element Ipd2SlowStepRatio ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Ipd2SlowStepRatio) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}AnalogType - - # Element DiffusionXsnCV ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}DiffusionXsnCV) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}AnalogType - - # Element PulseWidthMeanSeconds ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}PulseWidthMeanSeconds) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}AnalogType - - # Element IpdMeanSeconds ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}IpdMeanSeconds) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}AnalogType - - # Element Extensions ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Extensions) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Base inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}AnalogType - - # Attribute Nucleotide inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}AnalogType - - # Attribute Wavelength inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}AnalogType - - # Attribute CompoundID inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}AnalogType - - # Attribute LotID inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}AnalogType - - # Attribute Name inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Description inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Tags inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Format inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ResourceId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Version inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute CreatedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ModifiedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - _ElementMap.update({ - - }) - _AttributeMap.update({ - - }) -_module_typeBindings.CTD_ANON_24 = CTD_ANON_24 - - -# Complex type [anonymous] with content type ELEMENT_ONLY -class CTD_ANON_25 (AnalogType): - """A set of four analogs, one for each of the nucleotides, grouped together for the purposes of a single experiment.""" - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = None - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 274, 4) - _ElementMap = AnalogType._ElementMap.copy() - _AttributeMap = AnalogType._AttributeMap.copy() - # Base type is AnalogType - - # Element Spectrum ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Spectrum) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}AnalogType - - # Element RelativeAmplitude ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}RelativeAmplitude) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}AnalogType - - # Element IntraPulseXsnCV ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}IntraPulseXsnCV) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}AnalogType - - # Element InterPulseXsnCV ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}InterPulseXsnCV) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}AnalogType - - # Element Pw2SlowStepRatio ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Pw2SlowStepRatio) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}AnalogType - - # Element Ipd2SlowStepRatio ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Ipd2SlowStepRatio) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}AnalogType - - # Element DiffusionXsnCV ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}DiffusionXsnCV) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}AnalogType - - # Element PulseWidthMeanSeconds ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}PulseWidthMeanSeconds) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}AnalogType - - # Element IpdMeanSeconds ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}IpdMeanSeconds) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}AnalogType - - # Element Extensions ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Extensions) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Base inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}AnalogType - - # Attribute Nucleotide inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}AnalogType - - # Attribute Wavelength inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}AnalogType - - # Attribute CompoundID inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}AnalogType - - # Attribute LotID inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}AnalogType - - # Attribute Name inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Description inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Tags inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Format inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ResourceId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Version inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute CreatedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ModifiedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - _ElementMap.update({ - - }) - _AttributeMap.update({ - - }) -_module_typeBindings.CTD_ANON_25 = CTD_ANON_25 - - -# Complex type {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}InputOutputDataType with content type ELEMENT_ONLY -class InputOutputDataType (StrictEntityType): - """Complex type {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}InputOutputDataType with content type ELEMENT_ONLY""" - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'InputOutputDataType') - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 290, 2) - _ElementMap = StrictEntityType._ElementMap.copy() - _AttributeMap = StrictEntityType._AttributeMap.copy() - # Base type is StrictEntityType - - # Element Extensions ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Extensions) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Name inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Description inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Tags inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Format inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ResourceId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Version inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute CreatedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ModifiedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute UniqueId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType - - # Attribute MetaType inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType - - # Attribute TimeStampedName inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType - _ElementMap.update({ - - }) - _AttributeMap.update({ - - }) -_module_typeBindings.InputOutputDataType = InputOutputDataType -Namespace.addCategoryObject('typeBinding', 'InputOutputDataType', InputOutputDataType) - - -# Complex type {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}PartNumberType with content type ELEMENT_ONLY -class PartNumberType (DataEntityType): - """Generic representation of a supply kit. - -If the part number has an NFC associated with it, the contents of the NFC may be encoded here.""" - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'PartNumberType') - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 448, 2) - _ElementMap = DataEntityType._ElementMap.copy() - _AttributeMap = DataEntityType._AttributeMap.copy() - # Base type is DataEntityType - - # Element Extensions ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Extensions) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Element CheckSum ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}CheckSum) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}DataEntityType - - # Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Defaults uses Python identifier Defaults - __Defaults = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Defaults'), 'Defaults', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_PartNumberType_httppacificbiosciences_comPacBioBaseDataModel_xsdDefaults', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 1045, 2), ) - - - Defaults = property(__Defaults.value, __Defaults.set, None, 'Default paramaters and filters which may be applied to PartNumber types in order to constrain them via parameterization') - - - # Attribute Name inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Description inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Tags inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Format inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ResourceId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Version inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute CreatedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ModifiedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ValueDataType inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}DataEntityType - - # Attribute SimpleValue inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}DataEntityType - - # Attribute MetaType inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}DataEntityType - - # Attribute TimeStampedName inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}DataEntityType - - # Attribute PartNumber uses Python identifier PartNumber - __PartNumber = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'PartNumber'), 'PartNumber', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_PartNumberType_PartNumber', pyxb.binding.datatypes.string) - __PartNumber._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 459, 8) - __PartNumber._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 459, 8) - - PartNumber = property(__PartNumber.value, __PartNumber.set, None, 'The kit part number') - - - # Attribute LotNumber uses Python identifier LotNumber - __LotNumber = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'LotNumber'), 'LotNumber', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_PartNumberType_LotNumber', pyxb.binding.datatypes.string) - __LotNumber._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 464, 8) - __LotNumber._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 464, 8) - - LotNumber = property(__LotNumber.value, __LotNumber.set, None, 'The kit lot number') - - - # Attribute Barcode uses Python identifier Barcode - __Barcode = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'Barcode'), 'Barcode', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_PartNumberType_Barcode', pyxb.binding.datatypes.string) - __Barcode._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 469, 8) - __Barcode._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 469, 8) - - Barcode = property(__Barcode.value, __Barcode.set, None, 'The kit barcode; used for tracking purposes.') - - - # Attribute ExpirationDate uses Python identifier ExpirationDate - __ExpirationDate = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'ExpirationDate'), 'ExpirationDate', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_PartNumberType_ExpirationDate', pyxb.binding.datatypes.date) - __ExpirationDate._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 474, 8) - __ExpirationDate._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 474, 8) - - ExpirationDate = property(__ExpirationDate.value, __ExpirationDate.set, None, "The kit's shelf life") - - - # Attribute IsObsolete uses Python identifier IsObsolete - __IsObsolete = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'IsObsolete'), 'IsObsolete', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_PartNumberType_IsObsolete', pyxb.binding.datatypes.boolean, unicode_default='false') - __IsObsolete._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 479, 8) - __IsObsolete._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 479, 8) - - IsObsolete = property(__IsObsolete.value, __IsObsolete.set, None, None) - - - # Attribute IsRestricted uses Python identifier IsRestricted - __IsRestricted = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'IsRestricted'), 'IsRestricted', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_PartNumberType_IsRestricted', pyxb.binding.datatypes.boolean, unicode_default='false') - __IsRestricted._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 480, 8) - __IsRestricted._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 480, 8) - - IsRestricted = property(__IsRestricted.value, __IsRestricted.set, None, None) - - - # Attribute ChipType uses Python identifier ChipType - __ChipType = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'ChipType'), 'ChipType', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_PartNumberType_ChipType', _module_typeBindings.SupportedChipTypes, unicode_default='AllChips') - __ChipType._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 481, 8) - __ChipType._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 481, 8) - - ChipType = property(__ChipType.value, __ChipType.set, None, None) - - _ElementMap.update({ - __Defaults.name() : __Defaults - }) - _AttributeMap.update({ - __PartNumber.name() : __PartNumber, - __LotNumber.name() : __LotNumber, - __Barcode.name() : __Barcode, - __ExpirationDate.name() : __ExpirationDate, - __IsObsolete.name() : __IsObsolete, - __IsRestricted.name() : __IsRestricted, - __ChipType.name() : __ChipType - }) -_module_typeBindings.PartNumberType = PartNumberType -Namespace.addCategoryObject('typeBinding', 'PartNumberType', PartNumberType) - - -# Complex type {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}RecordedEventType with content type ELEMENT_ONLY -class RecordedEventType (DataEntityType): - """Metrics, system events, alarms, and logs may utilize this type""" - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'RecordedEventType') - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 485, 2) - _ElementMap = DataEntityType._ElementMap.copy() - _AttributeMap = DataEntityType._AttributeMap.copy() - # Base type is DataEntityType - - # Element Extensions ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Extensions) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Element CheckSum ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}CheckSum) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}DataEntityType - - # Attribute Name inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Description inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Tags inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Format inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ResourceId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Version inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute CreatedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ModifiedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ValueDataType inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}DataEntityType - - # Attribute SimpleValue inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}DataEntityType - - # Attribute MetaType inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}DataEntityType - - # Attribute TimeStampedName inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}DataEntityType - - # Attribute Context uses Python identifier Context - __Context = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'Context'), 'Context', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_RecordedEventType_Context', pyxb.binding.datatypes.string) - __Context._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 491, 8) - __Context._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 491, 8) - - Context = property(__Context.value, __Context.set, None, 'The part of the system in effect when the event was recorded') - - _ElementMap.update({ - - }) - _AttributeMap.update({ - __Context.name() : __Context - }) -_module_typeBindings.RecordedEventType = RecordedEventType -Namespace.addCategoryObject('typeBinding', 'RecordedEventType', RecordedEventType) - - -# Complex type {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}SequencingChemistry with content type ELEMENT_ONLY -class SequencingChemistry (DataEntityType): - """A container for a set of analogs""" - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'SequencingChemistry') - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 499, 2) - _ElementMap = DataEntityType._ElementMap.copy() - _AttributeMap = DataEntityType._AttributeMap.copy() - # Base type is DataEntityType - - # Element Extensions ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Extensions) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Element CheckSum ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}CheckSum) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}DataEntityType - - # Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}DyeSet uses Python identifier DyeSet - __DyeSet = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'DyeSet'), 'DyeSet', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_SequencingChemistry_httppacificbiosciences_comPacBioBaseDataModel_xsdDyeSet', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 506, 10), ) - - - DyeSet = property(__DyeSet.value, __DyeSet.set, None, None) - - - # Attribute Name inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Description inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Tags inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Format inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ResourceId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Version inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute CreatedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ModifiedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ValueDataType inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}DataEntityType - - # Attribute SimpleValue inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}DataEntityType - - # Attribute MetaType inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}DataEntityType - - # Attribute TimeStampedName inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}DataEntityType - _ElementMap.update({ - __DyeSet.name() : __DyeSet - }) - _AttributeMap.update({ - - }) -_module_typeBindings.SequencingChemistry = SequencingChemistry -Namespace.addCategoryObject('typeBinding', 'SequencingChemistry', SequencingChemistry) - - -# Complex type {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}SequencingChemistryConfig with content type ELEMENT_ONLY -class SequencingChemistryConfig (DataEntityType): - """A container for a set of analogs""" - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'SequencingChemistryConfig') - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 537, 2) - _ElementMap = DataEntityType._ElementMap.copy() - _AttributeMap = DataEntityType._AttributeMap.copy() - # Base type is DataEntityType - - # Element Extensions ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Extensions) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Element CheckSum ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}CheckSum) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}DataEntityType - - # Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Analogs uses Python identifier Analogs - __Analogs = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Analogs'), 'Analogs', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_SequencingChemistryConfig_httppacificbiosciences_comPacBioBaseDataModel_xsdAnalogs', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 544, 10), ) - - - Analogs = property(__Analogs.value, __Analogs.set, None, None) - - - # Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}DefaultLaserSetPoint uses Python identifier DefaultLaserSetPoint - __DefaultLaserSetPoint = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'DefaultLaserSetPoint'), 'DefaultLaserSetPoint', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_SequencingChemistryConfig_httppacificbiosciences_comPacBioBaseDataModel_xsdDefaultLaserSetPoint', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 551, 10), ) - - - DefaultLaserSetPoint = property(__DefaultLaserSetPoint.value, __DefaultLaserSetPoint.set, None, "The laser power at the input couple, needed to achieve predefined performance requirements based on a median 'golden' SMRT Cell.") - - - # Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}HqrfMethod uses Python identifier HqrfMethod - __HqrfMethod = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'HqrfMethod'), 'HqrfMethod', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_SequencingChemistryConfig_httppacificbiosciences_comPacBioBaseDataModel_xsdHqrfMethod', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 556, 10), ) - - - HqrfMethod = property(__HqrfMethod.value, __HqrfMethod.set, None, 'The method to be used by HQRF (High Quality Region Finder) in the basecaller.') - - - # Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}SNRCut uses Python identifier SNRCut - __SNRCut = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'SNRCut'), 'SNRCut', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_SequencingChemistryConfig_httppacificbiosciences_comPacBioBaseDataModel_xsdSNRCut', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 561, 10), ) - - - SNRCut = property(__SNRCut.value, __SNRCut.set, None, 'The SNRCut is applied in PPA (baz2bam) as a read-quality filter.') - - - # Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}TargetSNR uses Python identifier TargetSNR - __TargetSNR = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'TargetSNR'), 'TargetSNR', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_SequencingChemistryConfig_httppacificbiosciences_comPacBioBaseDataModel_xsdTargetSNR', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 566, 10), ) - - - TargetSNR = property(__TargetSNR.value, __TargetSNR.set, None, None) - - - # Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}DefaultMinimumPkMid uses Python identifier DefaultMinimumPkMid - __DefaultMinimumPkMid = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'DefaultMinimumPkMid'), 'DefaultMinimumPkMid', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_SequencingChemistryConfig_httppacificbiosciences_comPacBioBaseDataModel_xsdDefaultMinimumPkMid', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 574, 10), ) - - - DefaultMinimumPkMid = property(__DefaultMinimumPkMid.value, __DefaultMinimumPkMid.set, None, 'The default minimum PkMid to use when setting laser power to optimize sequencing signal level.') - - - # Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}ReferenceSnr uses Python identifier ReferenceSnr - __ReferenceSnr = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'ReferenceSnr'), 'ReferenceSnr', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_SequencingChemistryConfig_httppacificbiosciences_comPacBioBaseDataModel_xsdReferenceSnr', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 579, 10), ) - - - ReferenceSnr = property(__ReferenceSnr.value, __ReferenceSnr.set, None, 'The nominal or default SNR of the reference analog under the chemistry and detection configuration.') - - - # Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}ReferenceSpectrum uses Python identifier ReferenceSpectrum - __ReferenceSpectrum = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'ReferenceSpectrum'), 'ReferenceSpectrum', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_SequencingChemistryConfig_httppacificbiosciences_comPacBioBaseDataModel_xsdReferenceSpectrum', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 584, 10), ) - - - ReferenceSpectrum = property(__ReferenceSpectrum.value, __ReferenceSpectrum.set, None, 'The nominal or default spectrum of the reference analog under the chemistry and detection configuration. The spectrum is a vector of probabilities, given in the order of increasing filter-bin wavelength, that light emitted by the analog will fall in the corresponding filter bin of the instrument detection system. By convention, the values are normalized to sum to 1.') - - - # Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}EffectiveLoadingPercent uses Python identifier EffectiveLoadingPercent - __EffectiveLoadingPercent = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'EffectiveLoadingPercent'), 'EffectiveLoadingPercent', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_SequencingChemistryConfig_httppacificbiosciences_comPacBioBaseDataModel_xsdEffectiveLoadingPercent', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 612, 10), ) - - - EffectiveLoadingPercent = property(__EffectiveLoadingPercent.value, __EffectiveLoadingPercent.set, None, 'The largest conceivable loading percentage for this chemistry.') - - - # Attribute Name inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Description inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Tags inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Format inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ResourceId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Version inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute CreatedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ModifiedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ValueDataType inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}DataEntityType - - # Attribute SimpleValue inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}DataEntityType - - # Attribute MetaType inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}DataEntityType - - # Attribute TimeStampedName inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}DataEntityType - _ElementMap.update({ - __Analogs.name() : __Analogs, - __DefaultLaserSetPoint.name() : __DefaultLaserSetPoint, - __HqrfMethod.name() : __HqrfMethod, - __SNRCut.name() : __SNRCut, - __TargetSNR.name() : __TargetSNR, - __DefaultMinimumPkMid.name() : __DefaultMinimumPkMid, - __ReferenceSnr.name() : __ReferenceSnr, - __ReferenceSpectrum.name() : __ReferenceSpectrum, - __EffectiveLoadingPercent.name() : __EffectiveLoadingPercent - }) - _AttributeMap.update({ - - }) -_module_typeBindings.SequencingChemistryConfig = SequencingChemistryConfig -Namespace.addCategoryObject('typeBinding', 'SequencingChemistryConfig', SequencingChemistryConfig) - - -# Complex type {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}IndexedDataType with content type ELEMENT_ONLY -class IndexedDataType (InputOutputDataType): - """Complex type {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}IndexedDataType with content type ELEMENT_ONLY""" - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'IndexedDataType') - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 295, 2) - _ElementMap = InputOutputDataType._ElementMap.copy() - _AttributeMap = InputOutputDataType._AttributeMap.copy() - # Base type is InputOutputDataType - - # Element Extensions ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Extensions) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}ExternalResources uses Python identifier ExternalResources - __ExternalResources = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'ExternalResources'), 'ExternalResources', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_IndexedDataType_httppacificbiosciences_comPacBioBaseDataModel_xsdExternalResources', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 280, 2), ) - - - ExternalResources = property(__ExternalResources.value, __ExternalResources.set, None, 'Pointers to data that do not reside inside the parent structure') - - - # Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}FileIndices uses Python identifier FileIndices - __FileIndices = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'FileIndices'), 'FileIndices', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_IndexedDataType_httppacificbiosciences_comPacBioBaseDataModel_xsdFileIndices', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 299, 10), ) - - - FileIndices = property(__FileIndices.value, __FileIndices.set, None, None) - - - # Attribute Name inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Description inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Tags inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Format inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ResourceId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Version inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute CreatedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ModifiedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute UniqueId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType - - # Attribute MetaType inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType - - # Attribute TimeStampedName inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType - _ElementMap.update({ - __ExternalResources.name() : __ExternalResources, - __FileIndices.name() : __FileIndices - }) - _AttributeMap.update({ - - }) -_module_typeBindings.IndexedDataType = IndexedDataType -Namespace.addCategoryObject('typeBinding', 'IndexedDataType', IndexedDataType) - - -# Complex type {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}SupplyKitBinding with content type ELEMENT_ONLY -class SupplyKitBinding (PartNumberType): - """A more specific binding kit representation (includes SupplyKit fields). """ - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'SupplyKitBinding') - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 702, 2) - _ElementMap = PartNumberType._ElementMap.copy() - _AttributeMap = PartNumberType._AttributeMap.copy() - # Base type is PartNumberType - - # Element Extensions ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Extensions) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Element CheckSum ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}CheckSum) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}DataEntityType - - # Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Control uses Python identifier Control - __Control = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Control'), 'Control', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_SupplyKitBinding_httppacificbiosciences_comPacBioBaseDataModel_xsdControl', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 709, 10), ) - - - Control = property(__Control.value, __Control.set, None, 'Defines the binding kit internal control name. Present when used, otherwise not used if not defined. ') - - - # Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}IsControlUsed uses Python identifier IsControlUsed - __IsControlUsed = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'IsControlUsed'), 'IsControlUsed', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_SupplyKitBinding_httppacificbiosciences_comPacBioBaseDataModel_xsdIsControlUsed', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 714, 10), ) - - - IsControlUsed = property(__IsControlUsed.value, __IsControlUsed.set, None, 'True if the control was used during run, otherwise false. ') - - - # Element Defaults ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Defaults) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}PartNumberType - - # Attribute Name inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Description inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Tags inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Format inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ResourceId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Version inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute CreatedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ModifiedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ValueDataType inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}DataEntityType - - # Attribute SimpleValue inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}DataEntityType - - # Attribute MetaType inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}DataEntityType - - # Attribute TimeStampedName inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}DataEntityType - - # Attribute PartNumber inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}PartNumberType - - # Attribute LotNumber inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}PartNumberType - - # Attribute Barcode inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}PartNumberType - - # Attribute ExpirationDate inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}PartNumberType - - # Attribute IsObsolete inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}PartNumberType - - # Attribute IsRestricted inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}PartNumberType - - # Attribute ChipType inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}PartNumberType - _ElementMap.update({ - __Control.name() : __Control, - __IsControlUsed.name() : __IsControlUsed - }) - _AttributeMap.update({ - - }) -_module_typeBindings.SupplyKitBinding = SupplyKitBinding -Namespace.addCategoryObject('typeBinding', 'SupplyKitBinding', SupplyKitBinding) - - -# Complex type {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}SupplyKitCellPack with content type ELEMENT_ONLY -class SupplyKitCellPack (PartNumberType): - """Represents the package of cells. """ - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'SupplyKitCellPack') - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 723, 2) - _ElementMap = PartNumberType._ElementMap.copy() - _AttributeMap = PartNumberType._AttributeMap.copy() - # Base type is PartNumberType - - # Element Extensions ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Extensions) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Element CheckSum ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}CheckSum) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}DataEntityType - - # Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}ChipLayout uses Python identifier ChipLayout - __ChipLayout = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'ChipLayout'), 'ChipLayout', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_SupplyKitCellPack_httppacificbiosciences_comPacBioBaseDataModel_xsdChipLayout', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 730, 10), ) - - - ChipLayout = property(__ChipLayout.value, __ChipLayout.set, None, 'Defines the internal chip layout name, if any. ') - - - # Element Defaults ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Defaults) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}PartNumberType - - # Attribute Name inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Description inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Tags inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Format inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ResourceId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Version inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute CreatedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ModifiedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ValueDataType inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}DataEntityType - - # Attribute SimpleValue inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}DataEntityType - - # Attribute MetaType inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}DataEntityType - - # Attribute TimeStampedName inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}DataEntityType - - # Attribute PartNumber inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}PartNumberType - - # Attribute LotNumber inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}PartNumberType - - # Attribute Barcode inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}PartNumberType - - # Attribute ExpirationDate inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}PartNumberType - - # Attribute IsObsolete inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}PartNumberType - - # Attribute IsRestricted inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}PartNumberType - - # Attribute ChipType inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}PartNumberType - - # Attribute SupportsCellReuse uses Python identifier SupportsCellReuse - __SupportsCellReuse = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'SupportsCellReuse'), 'SupportsCellReuse', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_SupplyKitCellPack_SupportsCellReuse', pyxb.binding.datatypes.anySimpleType) - __SupportsCellReuse._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 736, 8) - __SupportsCellReuse._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 736, 8) - - SupportsCellReuse = property(__SupportsCellReuse.value, __SupportsCellReuse.set, None, 'If SupportsCellReuse is true, it can be used for regular sequencing as well as in a reuse scenario.') - - - # Attribute MovieTimeGrade uses Python identifier MovieTimeGrade - __MovieTimeGrade = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'MovieTimeGrade'), 'MovieTimeGrade', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_SupplyKitCellPack_MovieTimeGrade', pyxb.binding.datatypes.anySimpleType) - __MovieTimeGrade._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 741, 8) - __MovieTimeGrade._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 741, 8) - - MovieTimeGrade = property(__MovieTimeGrade.value, __MovieTimeGrade.set, None, 'Movie time grade that maps to a maximum movie time for the cell.') - - _ElementMap.update({ - __ChipLayout.name() : __ChipLayout - }) - _AttributeMap.update({ - __SupportsCellReuse.name() : __SupportsCellReuse, - __MovieTimeGrade.name() : __MovieTimeGrade - }) -_module_typeBindings.SupplyKitCellPack = SupplyKitCellPack -Namespace.addCategoryObject('typeBinding', 'SupplyKitCellPack', SupplyKitCellPack) - - -# Complex type {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}SupplyKitControl with content type ELEMENT_ONLY -class SupplyKitControl (PartNumberType): - """Represents the DNA control complex. """ - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'SupplyKitControl') - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 749, 2) - _ElementMap = PartNumberType._ElementMap.copy() - _AttributeMap = PartNumberType._AttributeMap.copy() - # Base type is PartNumberType - - # Element Extensions ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Extensions) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Element CheckSum ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}CheckSum) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}DataEntityType - - # Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}InternalControlName uses Python identifier InternalControlName - __InternalControlName = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'InternalControlName'), 'InternalControlName', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_SupplyKitControl_httppacificbiosciences_comPacBioBaseDataModel_xsdInternalControlName', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 756, 10), ) - - - InternalControlName = property(__InternalControlName.value, __InternalControlName.set, None, 'Defines the internal control name, if any. ') - - - # Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}CustomSequence uses Python identifier CustomSequence - __CustomSequence = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'CustomSequence'), 'CustomSequence', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_SupplyKitControl_httppacificbiosciences_comPacBioBaseDataModel_xsdCustomSequence', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 761, 10), ) - - - CustomSequence = property(__CustomSequence.value, __CustomSequence.set, None, None) - - - # Element Defaults ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Defaults) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}PartNumberType - - # Attribute Name inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Description inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Tags inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Format inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ResourceId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Version inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute CreatedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ModifiedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ValueDataType inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}DataEntityType - - # Attribute SimpleValue inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}DataEntityType - - # Attribute MetaType inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}DataEntityType - - # Attribute TimeStampedName inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}DataEntityType - - # Attribute PartNumber inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}PartNumberType - - # Attribute LotNumber inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}PartNumberType - - # Attribute Barcode inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}PartNumberType - - # Attribute ExpirationDate inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}PartNumberType - - # Attribute IsObsolete inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}PartNumberType - - # Attribute IsRestricted inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}PartNumberType - - # Attribute ChipType inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}PartNumberType - _ElementMap.update({ - __InternalControlName.name() : __InternalControlName, - __CustomSequence.name() : __CustomSequence - }) - _AttributeMap.update({ - - }) -_module_typeBindings.SupplyKitControl = SupplyKitControl -Namespace.addCategoryObject('typeBinding', 'SupplyKitControl', SupplyKitControl) - - -# Complex type {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}SupplyKitTemplate with content type ELEMENT_ONLY -class SupplyKitTemplate (PartNumberType): - """A more specific template kit representation (includes SupplyKit fields). """ - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'SupplyKitTemplate') - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 766, 2) - _ElementMap = PartNumberType._ElementMap.copy() - _AttributeMap = PartNumberType._AttributeMap.copy() - # Base type is PartNumberType - - # Element Extensions ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Extensions) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Element CheckSum ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}CheckSum) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}DataEntityType - - # Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}LeftAdaptorSequence uses Python identifier LeftAdaptorSequence - __LeftAdaptorSequence = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'LeftAdaptorSequence'), 'LeftAdaptorSequence', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_SupplyKitTemplate_httppacificbiosciences_comPacBioBaseDataModel_xsdLeftAdaptorSequence', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 773, 10), ) - - - LeftAdaptorSequence = property(__LeftAdaptorSequence.value, __LeftAdaptorSequence.set, None, 'Left adapter DNA sequence.') - - - # Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}LeftPrimerSequence uses Python identifier LeftPrimerSequence - __LeftPrimerSequence = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'LeftPrimerSequence'), 'LeftPrimerSequence', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_SupplyKitTemplate_httppacificbiosciences_comPacBioBaseDataModel_xsdLeftPrimerSequence', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 778, 10), ) - - - LeftPrimerSequence = property(__LeftPrimerSequence.value, __LeftPrimerSequence.set, None, None) - - - # Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}RightAdaptorSequence uses Python identifier RightAdaptorSequence - __RightAdaptorSequence = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'RightAdaptorSequence'), 'RightAdaptorSequence', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_SupplyKitTemplate_httppacificbiosciences_comPacBioBaseDataModel_xsdRightAdaptorSequence', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 779, 10), ) - - - RightAdaptorSequence = property(__RightAdaptorSequence.value, __RightAdaptorSequence.set, None, 'Right adapter DNA sequence. If not specified, a symmetric adapter model is inferred, where the left adapter sequence is used wherever needed.') - - - # Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}RightPrimerSequence uses Python identifier RightPrimerSequence - __RightPrimerSequence = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'RightPrimerSequence'), 'RightPrimerSequence', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_SupplyKitTemplate_httppacificbiosciences_comPacBioBaseDataModel_xsdRightPrimerSequence', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 784, 10), ) - - - RightPrimerSequence = property(__RightPrimerSequence.value, __RightPrimerSequence.set, None, 'Right primaer sequence. If not specified, a symmetric model is inferred, where the left primer sequence is used wherever needed.') - - - # Element Defaults ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Defaults) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}PartNumberType - - # Attribute Name inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Description inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Tags inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Format inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ResourceId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Version inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute CreatedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ModifiedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ValueDataType inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}DataEntityType - - # Attribute SimpleValue inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}DataEntityType - - # Attribute MetaType inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}DataEntityType - - # Attribute TimeStampedName inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}DataEntityType - - # Attribute PartNumber inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}PartNumberType - - # Attribute LotNumber inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}PartNumberType - - # Attribute Barcode inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}PartNumberType - - # Attribute ExpirationDate inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}PartNumberType - - # Attribute IsObsolete inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}PartNumberType - - # Attribute IsRestricted inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}PartNumberType - - # Attribute ChipType inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}PartNumberType - - # Attribute MinInsertSize uses Python identifier MinInsertSize - __MinInsertSize = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'MinInsertSize'), 'MinInsertSize', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_SupplyKitTemplate_MinInsertSize', pyxb.binding.datatypes.int) - __MinInsertSize._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 790, 8) - __MinInsertSize._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 790, 8) - - MinInsertSize = property(__MinInsertSize.value, __MinInsertSize.set, None, 'Minimum recommended insert size') - - - # Attribute MaxInsertSize uses Python identifier MaxInsertSize - __MaxInsertSize = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'MaxInsertSize'), 'MaxInsertSize', '__httppacificbiosciences_comPacBioBaseDataModel_xsd_SupplyKitTemplate_MaxInsertSize', pyxb.binding.datatypes.int) - __MaxInsertSize._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 795, 8) - __MaxInsertSize._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 795, 8) - - MaxInsertSize = property(__MaxInsertSize.value, __MaxInsertSize.set, None, 'Maximum recommended insert size') - - _ElementMap.update({ - __LeftAdaptorSequence.name() : __LeftAdaptorSequence, - __LeftPrimerSequence.name() : __LeftPrimerSequence, - __RightAdaptorSequence.name() : __RightAdaptorSequence, - __RightPrimerSequence.name() : __RightPrimerSequence - }) - _AttributeMap.update({ - __MinInsertSize.name() : __MinInsertSize, - __MaxInsertSize.name() : __MaxInsertSize - }) -_module_typeBindings.SupplyKitTemplate = SupplyKitTemplate -Namespace.addCategoryObject('typeBinding', 'SupplyKitTemplate', SupplyKitTemplate) - - -# Complex type [anonymous] with content type ELEMENT_ONLY -class CTD_ANON_26 (IndexedDataType): - """for example, an output file could be the BAM file, which could be associated with multiple indices into it.""" - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = None - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 1009, 4) - _ElementMap = IndexedDataType._ElementMap.copy() - _AttributeMap = IndexedDataType._AttributeMap.copy() - # Base type is IndexedDataType - - # Element Extensions ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Extensions) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Element ExternalResources ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}ExternalResources) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}IndexedDataType - - # Element FileIndices ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}FileIndices) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}IndexedDataType - - # Attribute Name inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Description inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Tags inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Format inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ResourceId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Version inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute CreatedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ModifiedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute UniqueId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType - - # Attribute MetaType inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType - - # Attribute TimeStampedName inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType - _ElementMap.update({ - - }) - _AttributeMap.update({ - - }) -_module_typeBindings.CTD_ANON_26 = CTD_ANON_26 - - -ExtensionElement = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ExtensionElement'), pyxb.binding.datatypes.anyType, documentation='A generic element whose contents are undefined at the schema level. This is used to extend the data model.', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 921, 2)) -Namespace.addCategoryObject('elementBinding', ExtensionElement.name().localName(), ExtensionElement) - -DataPointers = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'DataPointers'), CTD_ANON_3, documentation='Pointer list to UniqueIds in the system', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 235, 2)) -Namespace.addCategoryObject('elementBinding', DataPointers.name().localName(), DataPointers) - -ExternalResources = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ExternalResources'), CTD_ANON_4, documentation='Pointers to data that do not reside inside the parent structure', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 280, 2)) -Namespace.addCategoryObject('elementBinding', ExternalResources.name().localName(), ExternalResources) - -PacBioSequencingChemistry = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'PacBioSequencingChemistry'), CTD_ANON_9, documentation='Root element for document containing the container of analog set, SequencingChemistryConfig', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 527, 2)) -Namespace.addCategoryObject('elementBinding', PacBioSequencingChemistry.name().localName(), PacBioSequencingChemistry) - -ValueDataType = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ValueDataType'), SupportedDataTypes, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 919, 2)) -Namespace.addCategoryObject('elementBinding', ValueDataType.name().localName(), ValueDataType) - -KeyValueMap = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'KeyValueMap'), KeyValueMap_, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 1015, 2)) -Namespace.addCategoryObject('elementBinding', KeyValueMap.name().localName(), KeyValueMap) - -CellMaxMovieTimes = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'CellMaxMovieTimes'), KeyValueMap_, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 1016, 2)) -Namespace.addCategoryObject('elementBinding', CellMaxMovieTimes.name().localName(), CellMaxMovieTimes) - -Defaults = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Defaults'), DefaultsType, nillable=pyxb.binding.datatypes.boolean(1), documentation='Default paramaters and filters which may be applied to PartNumber types in order to constrain them via parameterization', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 1045, 2)) -Namespace.addCategoryObject('elementBinding', Defaults.name().localName(), Defaults) - -DataEntity = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'DataEntity'), DataEntityType, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 193, 2)) -Namespace.addCategoryObject('elementBinding', DataEntity.name().localName(), DataEntity) - -AutomationParameter = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'AutomationParameter'), DataEntityType, documentation='One or more collection parameters, such as MovieLength, InsertSize, UseStageStart, IsControl, etc..', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 356, 2)) -Namespace.addCategoryObject('elementBinding', AutomationParameter.name().localName(), AutomationParameter) - -ConfigSetAnalog = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ConfigSetAnalog'), CTD_ANON_24, documentation='An unlimited number of analogs listed for the purposes of hosting in a configuration file. e.g. a list of all possible analogs on the system', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 183, 2)) -Namespace.addCategoryObject('elementBinding', ConfigSetAnalog.name().localName(), ConfigSetAnalog) - -DyeSetAnalog = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'DyeSetAnalog'), CTD_ANON_25, documentation='A set of four analogs, one for each of the nucleotides, grouped together for the purposes of a single experiment.', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 270, 2)) -Namespace.addCategoryObject('elementBinding', DyeSetAnalog.name().localName(), DyeSetAnalog) - -ChemistryConfig = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ChemistryConfig'), SequencingChemistryConfig, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 1044, 2)) -Namespace.addCategoryObject('elementBinding', ChemistryConfig.name().localName(), ChemistryConfig) - -ExternalResource = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ExternalResource'), CTD_ANON_26, documentation='for example, an output file could be the BAM file, which could be associated with multiple indices into it.', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 1005, 2)) -Namespace.addCategoryObject('elementBinding', ExternalResource.name().localName(), ExternalResource) - - - -CTD_ANON._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Values'), CTD_ANON_, scope=CTD_ANON, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 16, 16))) - -def _BuildAutomaton (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton - del _BuildAutomaton - import pyxb.utils.fac as fac - - counters = set() - states = [] - final_update = set() - symbol = pyxb.binding.content.ElementUse(CTD_ANON._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Values')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 16, 16)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - transitions = [] - st_0._set_transitionSet(transitions) - return fac.Automaton(states, counters, False, containing_state=None) -CTD_ANON._Automaton = _BuildAutomaton() - - - - -CTD_ANON_._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Value'), pyxb.binding.datatypes.float, scope=CTD_ANON_, documentation='There should be as many values as specified in the Number of Filter Bins attribute.\nEach value is a probability, in the range of [0, 1].', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 19, 22))) - -def _BuildAutomaton_ (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_ - del _BuildAutomaton_ - import pyxb.utils.fac as fac - - counters = set() - states = [] - final_update = set() - symbol = pyxb.binding.content.ElementUse(CTD_ANON_._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Value')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 19, 22)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - transitions = [] - transitions.append(fac.Transition(st_0, [ - ])) - st_0._set_transitionSet(transitions) - return fac.Automaton(states, counters, False, containing_state=None) -CTD_ANON_._Automaton = _BuildAutomaton_() - - - - -CTD_ANON_2._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ExtensionElement'), pyxb.binding.datatypes.anyType, scope=CTD_ANON_2, documentation='A generic element whose contents are undefined at the schema level. This is used to extend the data model.', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 921, 2))) - -def _BuildAutomaton_2 (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_2 - del _BuildAutomaton_2 - import pyxb.utils.fac as fac - - counters = set() - cc_0 = fac.CounterCondition(min=0, max=None, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 101, 12)) - counters.add(cc_0) - states = [] - final_update = set() - final_update.add(fac.UpdateInstruction(cc_0, False)) - symbol = pyxb.binding.content.ElementUse(CTD_ANON_2._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'ExtensionElement')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 101, 12)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - transitions = [] - transitions.append(fac.Transition(st_0, [ - fac.UpdateInstruction(cc_0, True) ])) - st_0._set_transitionSet(transitions) - return fac.Automaton(states, counters, True, containing_state=None) -CTD_ANON_2._Automaton = _BuildAutomaton_2() - - - - -CTD_ANON_3._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'DataPointer'), pyxb.binding.datatypes.IDREF, scope=CTD_ANON_3, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 241, 8))) - -def _BuildAutomaton_3 (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_3 - del _BuildAutomaton_3 - import pyxb.utils.fac as fac - - counters = set() - cc_0 = fac.CounterCondition(min=0, max=None, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 241, 8)) - counters.add(cc_0) - states = [] - final_update = set() - final_update.add(fac.UpdateInstruction(cc_0, False)) - symbol = pyxb.binding.content.ElementUse(CTD_ANON_3._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DataPointer')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 241, 8)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - transitions = [] - transitions.append(fac.Transition(st_0, [ - fac.UpdateInstruction(cc_0, True) ])) - st_0._set_transitionSet(transitions) - return fac.Automaton(states, counters, True, containing_state=None) -CTD_ANON_3._Automaton = _BuildAutomaton_3() - - - - -CTD_ANON_4._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ExternalResource'), CTD_ANON_26, scope=CTD_ANON_4, documentation='for example, an output file could be the BAM file, which could be associated with multiple indices into it.', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 1005, 2))) - -def _BuildAutomaton_4 (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_4 - del _BuildAutomaton_4 - import pyxb.utils.fac as fac - - counters = set() - states = [] - final_update = set() - symbol = pyxb.binding.content.ElementUse(CTD_ANON_4._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'ExternalResource')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 286, 8)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - transitions = [] - transitions.append(fac.Transition(st_0, [ - ])) - st_0._set_transitionSet(transitions) - return fac.Automaton(states, counters, False, containing_state=None) -CTD_ANON_4._Automaton = _BuildAutomaton_4() - - - - -CTD_ANON_5._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'FileIndex'), InputOutputDataType, scope=CTD_ANON_5, documentation='e.g. index for output files, allowing one to find information in the output file', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 302, 16))) - -def _BuildAutomaton_5 (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_5 - del _BuildAutomaton_5 - import pyxb.utils.fac as fac - - counters = set() - states = [] - final_update = set() - symbol = pyxb.binding.content.ElementUse(CTD_ANON_5._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'FileIndex')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 302, 16)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - transitions = [] - transitions.append(fac.Transition(st_0, [ - ])) - st_0._set_transitionSet(transitions) - return fac.Automaton(states, counters, False, containing_state=None) -CTD_ANON_5._Automaton = _BuildAutomaton_5() - - - - -CTD_ANON_6._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'AutomationParameter'), DataEntityType, scope=CTD_ANON_6, documentation='One or more collection parameters, such as MovieLength, InsertSize, UseStageStart, IsControl, etc..', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 356, 2))) - -def _BuildAutomaton_6 (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_6 - del _BuildAutomaton_6 - import pyxb.utils.fac as fac - - counters = set() - states = [] - final_update = set() - symbol = pyxb.binding.content.ElementUse(CTD_ANON_6._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'AutomationParameter')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 322, 16)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - transitions = [] - transitions.append(fac.Transition(st_0, [ - ])) - st_0._set_transitionSet(transitions) - return fac.Automaton(states, counters, False, containing_state=None) -CTD_ANON_6._Automaton = _BuildAutomaton_6() - - - - -CTD_ANON_7._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Automation'), AutomationType, scope=CTD_ANON_7, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 395, 16))) - -def _BuildAutomaton_7 (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_7 - del _BuildAutomaton_7 - import pyxb.utils.fac as fac - - counters = set() - states = [] - final_update = set() - symbol = pyxb.binding.content.ElementUse(CTD_ANON_7._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Automation')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 395, 16)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - transitions = [] - transitions.append(fac.Transition(st_0, [ - ])) - st_0._set_transitionSet(transitions) - return fac.Automaton(states, counters, False, containing_state=None) -CTD_ANON_7._Automaton = _BuildAutomaton_7() - - - - -CTD_ANON_8._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Analog'), AnalogType, scope=CTD_ANON_8, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 514, 26))) - -def _BuildAutomaton_8 (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_8 - del _BuildAutomaton_8 - import pyxb.utils.fac as fac - - counters = set() - cc_0 = fac.CounterCondition(min=1, max=4, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 514, 26)) - counters.add(cc_0) - states = [] - final_update = set() - final_update.add(fac.UpdateInstruction(cc_0, False)) - symbol = pyxb.binding.content.ElementUse(CTD_ANON_8._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Analog')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 514, 26)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - transitions = [] - transitions.append(fac.Transition(st_0, [ - fac.UpdateInstruction(cc_0, True) ])) - st_0._set_transitionSet(transitions) - return fac.Automaton(states, counters, False, containing_state=None) -CTD_ANON_8._Automaton = _BuildAutomaton_8() - - - - -CTD_ANON_9._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ChemistryConfig'), SequencingChemistryConfig, scope=CTD_ANON_9, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 1044, 2))) - -def _BuildAutomaton_9 (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_9 - del _BuildAutomaton_9 - import pyxb.utils.fac as fac - - counters = set() - states = [] - final_update = set() - symbol = pyxb.binding.content.ElementUse(CTD_ANON_9._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'ChemistryConfig')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 533, 8)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - transitions = [] - st_0._set_transitionSet(transitions) - return fac.Automaton(states, counters, False, containing_state=None) -CTD_ANON_9._Automaton = _BuildAutomaton_9() - - - - -CTD_ANON_10._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Analog'), AnalogType, scope=CTD_ANON_10, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 547, 16))) - -def _BuildAutomaton_10 (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_10 - del _BuildAutomaton_10 - import pyxb.utils.fac as fac - - counters = set() - cc_0 = fac.CounterCondition(min=1, max=4, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 547, 16)) - counters.add(cc_0) - states = [] - final_update = set() - final_update.add(fac.UpdateInstruction(cc_0, False)) - symbol = pyxb.binding.content.ElementUse(CTD_ANON_10._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Analog')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 547, 16)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - transitions = [] - transitions.append(fac.Transition(st_0, [ - fac.UpdateInstruction(cc_0, True) ])) - st_0._set_transitionSet(transitions) - return fac.Automaton(states, counters, False, containing_state=None) -CTD_ANON_10._Automaton = _BuildAutomaton_10() - - - - -CTD_ANON_12._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Values'), CTD_ANON_13, scope=CTD_ANON_12, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 590, 16))) - -def _BuildAutomaton_11 (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_11 - del _BuildAutomaton_11 - import pyxb.utils.fac as fac - - counters = set() - states = [] - final_update = set() - symbol = pyxb.binding.content.ElementUse(CTD_ANON_12._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Values')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 590, 16)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - transitions = [] - st_0._set_transitionSet(transitions) - return fac.Automaton(states, counters, False, containing_state=None) -CTD_ANON_12._Automaton = _BuildAutomaton_11() - - - - -CTD_ANON_13._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Value'), pyxb.binding.datatypes.float, scope=CTD_ANON_13, documentation='\n\t\t\t\t There should be as many values as specified in the Number of Filter Bins attribute.\n\t\t\t\t Each value is a probability, in the range of [0, 1].\n\t\t\t\t ', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 593, 22))) - -def _BuildAutomaton_12 (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_12 - del _BuildAutomaton_12 - import pyxb.utils.fac as fac - - counters = set() - states = [] - final_update = set() - symbol = pyxb.binding.content.ElementUse(CTD_ANON_13._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Value')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 593, 22)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - transitions = [] - transitions.append(fac.Transition(st_0, [ - ])) - st_0._set_transitionSet(transitions) - return fac.Automaton(states, counters, False, containing_state=None) -CTD_ANON_13._Automaton = _BuildAutomaton_12() - - - - -CTD_ANON_14._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'BinCount'), pyxb.binding.datatypes.int, scope=CTD_ANON_14, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 638, 16))) - -def _BuildAutomaton_13 (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_13 - del _BuildAutomaton_13 - import pyxb.utils.fac as fac - - counters = set() - states = [] - final_update = set() - symbol = pyxb.binding.content.ElementUse(CTD_ANON_14._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'BinCount')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 638, 16)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - transitions = [] - transitions.append(fac.Transition(st_0, [ - ])) - st_0._set_transitionSet(transitions) - return fac.Automaton(states, counters, False, containing_state=None) -CTD_ANON_14._Automaton = _BuildAutomaton_13() - - - - -CTD_ANON_15._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'BinCount'), pyxb.binding.datatypes.int, scope=CTD_ANON_15, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 664, 16))) - -def _BuildAutomaton_14 (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_14 - del _BuildAutomaton_14 - import pyxb.utils.fac as fac - - counters = set() - states = [] - final_update = set() - symbol = pyxb.binding.content.ElementUse(CTD_ANON_15._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'BinCount')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 664, 16)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - transitions = [] - transitions.append(fac.Transition(st_0, [ - ])) - st_0._set_transitionSet(transitions) - return fac.Automaton(states, counters, False, containing_state=None) -CTD_ANON_15._Automaton = _BuildAutomaton_14() - - - - -CTD_ANON_16._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'BinLabel'), pyxb.binding.datatypes.string, scope=CTD_ANON_16, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 672, 16))) - -def _BuildAutomaton_15 (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_15 - del _BuildAutomaton_15 - import pyxb.utils.fac as fac - - counters = set() - states = [] - final_update = set() - symbol = pyxb.binding.content.ElementUse(CTD_ANON_16._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'BinLabel')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 672, 16)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - transitions = [] - transitions.append(fac.Transition(st_0, [ - ])) - st_0._set_transitionSet(transitions) - return fac.Automaton(states, counters, False, containing_state=None) -CTD_ANON_16._Automaton = _BuildAutomaton_15() - - - - -CTD_ANON_17._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Val'), pyxb.binding.datatypes.float, scope=CTD_ANON_17, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 694, 16))) - -def _BuildAutomaton_16 (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_16 - del _BuildAutomaton_16 - import pyxb.utils.fac as fac - - counters = set() - cc_0 = fac.CounterCondition(min=0, max=None, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 694, 16)) - counters.add(cc_0) - states = [] - final_update = set() - final_update.add(fac.UpdateInstruction(cc_0, False)) - symbol = pyxb.binding.content.ElementUse(CTD_ANON_17._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Val')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 694, 16)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - transitions = [] - transitions.append(fac.Transition(st_0, [ - fac.UpdateInstruction(cc_0, True) ])) - st_0._set_transitionSet(transitions) - return fac.Automaton(states, counters, True, containing_state=None) -CTD_ANON_17._Automaton = _BuildAutomaton_16() - - - - -UserDefinedFieldsType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'DataEntities'), DataEntityType, scope=UserDefinedFieldsType, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 916, 6))) - -def _BuildAutomaton_17 (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_17 - del _BuildAutomaton_17 - import pyxb.utils.fac as fac - - counters = set() - states = [] - final_update = set() - symbol = pyxb.binding.content.ElementUse(UserDefinedFieldsType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DataEntities')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 916, 6)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - transitions = [] - transitions.append(fac.Transition(st_0, [ - ])) - st_0._set_transitionSet(transitions) - return fac.Automaton(states, counters, False, containing_state=None) -UserDefinedFieldsType._Automaton = _BuildAutomaton_17() - - - - -FilterType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Properties'), CTD_ANON_18, scope=FilterType, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 982, 6))) - -def _BuildAutomaton_18 (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_18 - del _BuildAutomaton_18 - import pyxb.utils.fac as fac - - counters = set() - states = [] - final_update = set() - symbol = pyxb.binding.content.ElementUse(FilterType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Properties')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 982, 6)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - transitions = [] - st_0._set_transitionSet(transitions) - return fac.Automaton(states, counters, False, containing_state=None) -FilterType._Automaton = _BuildAutomaton_18() - - - - -CTD_ANON_18._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Property'), CTD_ANON_22, scope=CTD_ANON_18, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 985, 12))) - -def _BuildAutomaton_19 (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_19 - del _BuildAutomaton_19 - import pyxb.utils.fac as fac - - counters = set() - states = [] - final_update = set() - symbol = pyxb.binding.content.ElementUse(CTD_ANON_18._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Property')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 985, 12)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - transitions = [] - transitions.append(fac.Transition(st_0, [ - ])) - st_0._set_transitionSet(transitions) - return fac.Automaton(states, counters, False, containing_state=None) -CTD_ANON_18._Automaton = _BuildAutomaton_19() - - - - -KeyValueMap_._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Items'), CTD_ANON_19, scope=KeyValueMap_, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 1019, 6))) - -def _BuildAutomaton_20 (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_20 - del _BuildAutomaton_20 - import pyxb.utils.fac as fac - - counters = set() - states = [] - final_update = set() - symbol = pyxb.binding.content.ElementUse(KeyValueMap_._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Items')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 1019, 6)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - transitions = [] - st_0._set_transitionSet(transitions) - return fac.Automaton(states, counters, False, containing_state=None) -KeyValueMap_._Automaton = _BuildAutomaton_20() - - - - -CTD_ANON_19._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Item'), MapItemType, scope=CTD_ANON_19, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 1022, 12))) - -def _BuildAutomaton_21 (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_21 - del _BuildAutomaton_21 - import pyxb.utils.fac as fac - - counters = set() - cc_0 = fac.CounterCondition(min=0, max=None, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 1022, 12)) - counters.add(cc_0) - states = [] - final_update = set() - final_update.add(fac.UpdateInstruction(cc_0, False)) - symbol = pyxb.binding.content.ElementUse(CTD_ANON_19._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Item')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 1022, 12)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - transitions = [] - transitions.append(fac.Transition(st_0, [ - fac.UpdateInstruction(cc_0, True) ])) - st_0._set_transitionSet(transitions) - return fac.Automaton(states, counters, True, containing_state=None) -CTD_ANON_19._Automaton = _BuildAutomaton_21() - - - - -MapType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'KeyValueMap'), KeyValueMap_, scope=MapType, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 1034, 6))) - -def _BuildAutomaton_22 (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_22 - del _BuildAutomaton_22 - import pyxb.utils.fac as fac - - counters = set() - states = [] - final_update = set() - symbol = pyxb.binding.content.ElementUse(MapType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'KeyValueMap')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 1034, 6)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - transitions = [] - st_0._set_transitionSet(transitions) - return fac.Automaton(states, counters, False, containing_state=None) -MapType._Automaton = _BuildAutomaton_22() - - - - -MapItemType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Key'), pyxb.binding.datatypes.string, scope=MapItemType, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 1039, 6))) - -MapItemType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Value'), pyxb.binding.datatypes.anyType, scope=MapItemType, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 1040, 6))) - -MapItemType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Description'), pyxb.binding.datatypes.string, scope=MapItemType, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 1041, 6))) - -def _BuildAutomaton_23 (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_23 - del _BuildAutomaton_23 - import pyxb.utils.fac as fac - - counters = set() - states = [] - final_update = None - symbol = pyxb.binding.content.ElementUse(MapItemType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Key')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 1039, 6)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - final_update = None - symbol = pyxb.binding.content.ElementUse(MapItemType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Value')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 1040, 6)) - st_1 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_1) - final_update = set() - symbol = pyxb.binding.content.ElementUse(MapItemType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Description')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 1041, 6)) - st_2 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_2) - transitions = [] - transitions.append(fac.Transition(st_1, [ - ])) - st_0._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_2, [ - ])) - st_1._set_transitionSet(transitions) - transitions = [] - st_2._set_transitionSet(transitions) - return fac.Automaton(states, counters, False, containing_state=None) -MapItemType._Automaton = _BuildAutomaton_23() - - - - -DefaultsType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'AutomationParameters'), CTD_ANON_20, nillable=pyxb.binding.datatypes.boolean(1), scope=DefaultsType, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 1055, 6))) - -DefaultsType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Filters'), CTD_ANON_21, nillable=pyxb.binding.datatypes.boolean(1), scope=DefaultsType, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 1062, 6))) - -def _BuildAutomaton_24 (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_24 - del _BuildAutomaton_24 - import pyxb.utils.fac as fac - - counters = set() - cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 1055, 6)) - counters.add(cc_0) - cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 1062, 6)) - counters.add(cc_1) - states = [] - final_update = set() - final_update.add(fac.UpdateInstruction(cc_0, False)) - symbol = pyxb.binding.content.ElementUse(DefaultsType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'AutomationParameters')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 1055, 6)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_1, False)) - symbol = pyxb.binding.content.ElementUse(DefaultsType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Filters')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 1062, 6)) - st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_1) - transitions = [] - transitions.append(fac.Transition(st_0, [ - fac.UpdateInstruction(cc_0, True) ])) - transitions.append(fac.Transition(st_1, [ - fac.UpdateInstruction(cc_0, False) ])) - st_0._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_1, [ - fac.UpdateInstruction(cc_1, True) ])) - st_1._set_transitionSet(transitions) - return fac.Automaton(states, counters, True, containing_state=None) -DefaultsType._Automaton = _BuildAutomaton_24() - - - - -CTD_ANON_20._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'AutomationParameter'), DataEntityType, scope=CTD_ANON_20, documentation='One or more collection parameters, such as MovieLength, InsertSize, UseStageStart, IsControl, etc..', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 356, 2))) - -def _BuildAutomaton_25 (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_25 - del _BuildAutomaton_25 - import pyxb.utils.fac as fac - - counters = set() - states = [] - final_update = set() - symbol = pyxb.binding.content.ElementUse(CTD_ANON_20._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'AutomationParameter')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 1058, 12)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - transitions = [] - transitions.append(fac.Transition(st_0, [ - ])) - st_0._set_transitionSet(transitions) - return fac.Automaton(states, counters, False, containing_state=None) -CTD_ANON_20._Automaton = _BuildAutomaton_25() - - - - -CTD_ANON_21._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Filter'), FilterType, scope=CTD_ANON_21, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 1065, 12))) - -def _BuildAutomaton_26 (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_26 - del _BuildAutomaton_26 - import pyxb.utils.fac as fac - - counters = set() - states = [] - final_update = set() - symbol = pyxb.binding.content.ElementUse(CTD_ANON_21._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Filter')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 1065, 12)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - transitions = [] - transitions.append(fac.Transition(st_0, [ - ])) - st_0._set_transitionSet(transitions) - return fac.Automaton(states, counters, False, containing_state=None) -CTD_ANON_21._Automaton = _BuildAutomaton_26() - - - - -BaseEntityType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Extensions'), CTD_ANON_2, scope=BaseEntityType, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6))) - -def _BuildAutomaton_27 (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_27 - del _BuildAutomaton_27 - import pyxb.utils.fac as fac - - counters = set() - cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - counters.add(cc_0) - states = [] - final_update = set() - final_update.add(fac.UpdateInstruction(cc_0, False)) - symbol = pyxb.binding.content.ElementUse(BaseEntityType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - transitions = [] - transitions.append(fac.Transition(st_0, [ - fac.UpdateInstruction(cc_0, True) ])) - st_0._set_transitionSet(transitions) - return fac.Automaton(states, counters, True, containing_state=None) -BaseEntityType._Automaton = _BuildAutomaton_27() - - - - -AnalogType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Spectrum'), CTD_ANON, scope=AnalogType, documentation='A vector of probabilities, given in the order of increasing filter-bin wavelength, that light emitted by the analog will fall in the corresponding filter bin of the instrument detection system. By convention, the values are normalized to sum to 1.', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 10, 10))) - -AnalogType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'RelativeAmplitude'), pyxb.binding.datatypes.float, scope=AnalogType, documentation='Relative intensity of emission vs. a reference analog using standardized metrology – e.g., relative to the amplitude of the “542” analog as measured by the mean DWS pkMid on the Astro instrument.', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 36, 10))) - -AnalogType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'IntraPulseXsnCV'), pyxb.binding.datatypes.float, scope=AnalogType, documentation='The 1-sigma fractional variation of the intra-pulse signal, independent of any Shot noise associated with that signal', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 41, 10))) - -AnalogType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'InterPulseXsnCV'), pyxb.binding.datatypes.float, scope=AnalogType, documentation='The 1-sigma fractional variation, pulse-to-pulse, of the mean signal level (i.e., the pkMid).', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 46, 10))) - -AnalogType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Pw2SlowStepRatio'), pyxb.binding.datatypes.float, scope=AnalogType, documentation='The pulse-width two slow-step ratio.', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 51, 10))) - -AnalogType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Ipd2SlowStepRatio'), pyxb.binding.datatypes.float, scope=AnalogType, documentation='The inter-pulse distance (IPD) two slow-step ratio.', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 56, 10))) - -AnalogType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'DiffusionXsnCV'), pyxb.binding.datatypes.float, scope=AnalogType, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 61, 10))) - -AnalogType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'PulseWidthMeanSeconds'), pyxb.binding.datatypes.float, scope=AnalogType, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 62, 10))) - -AnalogType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'IpdMeanSeconds'), pyxb.binding.datatypes.float, scope=AnalogType, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 63, 10))) - -def _BuildAutomaton_28 (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_28 - del _BuildAutomaton_28 - import pyxb.utils.fac as fac - - counters = set() - cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - counters.add(cc_0) - cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 51, 10)) - counters.add(cc_1) - cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 56, 10)) - counters.add(cc_2) - cc_3 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 62, 10)) - counters.add(cc_3) - cc_4 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 63, 10)) - counters.add(cc_4) - states = [] - final_update = None - symbol = pyxb.binding.content.ElementUse(AnalogType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - final_update = None - symbol = pyxb.binding.content.ElementUse(AnalogType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Spectrum')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 10, 10)) - st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_1) - final_update = None - symbol = pyxb.binding.content.ElementUse(AnalogType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'RelativeAmplitude')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 36, 10)) - st_2 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_2) - final_update = None - symbol = pyxb.binding.content.ElementUse(AnalogType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'IntraPulseXsnCV')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 41, 10)) - st_3 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_3) - final_update = None - symbol = pyxb.binding.content.ElementUse(AnalogType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'InterPulseXsnCV')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 46, 10)) - st_4 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_4) - final_update = None - symbol = pyxb.binding.content.ElementUse(AnalogType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Pw2SlowStepRatio')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 51, 10)) - st_5 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_5) - final_update = None - symbol = pyxb.binding.content.ElementUse(AnalogType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Ipd2SlowStepRatio')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 56, 10)) - st_6 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_6) - final_update = set() - symbol = pyxb.binding.content.ElementUse(AnalogType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DiffusionXsnCV')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 61, 10)) - st_7 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_7) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_3, False)) - symbol = pyxb.binding.content.ElementUse(AnalogType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'PulseWidthMeanSeconds')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 62, 10)) - st_8 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_8) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_4, False)) - symbol = pyxb.binding.content.ElementUse(AnalogType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'IpdMeanSeconds')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 63, 10)) - st_9 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_9) - transitions = [] - transitions.append(fac.Transition(st_0, [ - fac.UpdateInstruction(cc_0, True) ])) - transitions.append(fac.Transition(st_1, [ - fac.UpdateInstruction(cc_0, False) ])) - st_0._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_2, [ - ])) - st_1._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_3, [ - ])) - st_2._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_4, [ - ])) - st_3._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_5, [ - ])) - transitions.append(fac.Transition(st_6, [ - ])) - transitions.append(fac.Transition(st_7, [ - ])) - st_4._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_5, [ - fac.UpdateInstruction(cc_1, True) ])) - transitions.append(fac.Transition(st_6, [ - fac.UpdateInstruction(cc_1, False) ])) - transitions.append(fac.Transition(st_7, [ - fac.UpdateInstruction(cc_1, False) ])) - st_5._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_6, [ - fac.UpdateInstruction(cc_2, True) ])) - transitions.append(fac.Transition(st_7, [ - fac.UpdateInstruction(cc_2, False) ])) - st_6._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_8, [ - ])) - transitions.append(fac.Transition(st_9, [ - ])) - st_7._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_8, [ - fac.UpdateInstruction(cc_3, True) ])) - transitions.append(fac.Transition(st_9, [ - fac.UpdateInstruction(cc_3, False) ])) - st_8._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_9, [ - fac.UpdateInstruction(cc_4, True) ])) - st_9._set_transitionSet(transitions) - return fac.Automaton(states, counters, False, containing_state=None) -AnalogType._Automaton = _BuildAutomaton_28() - - - - -def _BuildAutomaton_29 (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_29 - del _BuildAutomaton_29 - import pyxb.utils.fac as fac - - counters = set() - cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - counters.add(cc_0) - states = [] - final_update = set() - final_update.add(fac.UpdateInstruction(cc_0, False)) - symbol = pyxb.binding.content.ElementUse(StrictEntityType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - transitions = [] - transitions.append(fac.Transition(st_0, [ - fac.UpdateInstruction(cc_0, True) ])) - st_0._set_transitionSet(transitions) - return fac.Automaton(states, counters, True, containing_state=None) -StrictEntityType._Automaton = _BuildAutomaton_29() - - - - -DataEntityType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'CheckSum'), pyxb.binding.datatypes.string, scope=DataEntityType, documentation='small-size datum of the attached value for the purpose of detecting errors or modification which may have been introduced during its transmission or storage', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 206, 10))) - -def _BuildAutomaton_30 (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_30 - del _BuildAutomaton_30 - import pyxb.utils.fac as fac - - counters = set() - cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - counters.add(cc_0) - cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 206, 10)) - counters.add(cc_1) - states = [] - final_update = set() - final_update.add(fac.UpdateInstruction(cc_0, False)) - symbol = pyxb.binding.content.ElementUse(DataEntityType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_1, False)) - symbol = pyxb.binding.content.ElementUse(DataEntityType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'CheckSum')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 206, 10)) - st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_1) - transitions = [] - transitions.append(fac.Transition(st_0, [ - fac.UpdateInstruction(cc_0, True) ])) - transitions.append(fac.Transition(st_1, [ - fac.UpdateInstruction(cc_0, False) ])) - st_0._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_1, [ - fac.UpdateInstruction(cc_1, True) ])) - st_1._set_transitionSet(transitions) - return fac.Automaton(states, counters, True, containing_state=None) -DataEntityType._Automaton = _BuildAutomaton_30() - - - - -def _BuildAutomaton_31 (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_31 - del _BuildAutomaton_31 - import pyxb.utils.fac as fac - - counters = set() - cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - counters.add(cc_0) - states = [] - final_update = set() - final_update.add(fac.UpdateInstruction(cc_0, False)) - symbol = pyxb.binding.content.ElementUse(DNABarcode._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - transitions = [] - transitions.append(fac.Transition(st_0, [ - fac.UpdateInstruction(cc_0, True) ])) - st_0._set_transitionSet(transitions) - return fac.Automaton(states, counters, True, containing_state=None) -DNABarcode._Automaton = _BuildAutomaton_31() - - - - -AutomationType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'AutomationParameters'), CTD_ANON_6, scope=AutomationType, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 319, 10))) - -AutomationType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Defaults'), DefaultsType, nillable=pyxb.binding.datatypes.boolean(1), scope=AutomationType, documentation='Default paramaters and filters which may be applied to PartNumber types in order to constrain them via parameterization', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 1045, 2))) - -def _BuildAutomaton_32 (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_32 - del _BuildAutomaton_32 - import pyxb.utils.fac as fac - - counters = set() - cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - counters.add(cc_0) - cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 319, 10)) - counters.add(cc_1) - cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 326, 10)) - counters.add(cc_2) - states = [] - final_update = set() - final_update.add(fac.UpdateInstruction(cc_0, False)) - symbol = pyxb.binding.content.ElementUse(AutomationType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_1, False)) - symbol = pyxb.binding.content.ElementUse(AutomationType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'AutomationParameters')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 319, 10)) - st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_1) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_2, False)) - symbol = pyxb.binding.content.ElementUse(AutomationType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Defaults')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 326, 10)) - st_2 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_2) - transitions = [] - transitions.append(fac.Transition(st_0, [ - fac.UpdateInstruction(cc_0, True) ])) - transitions.append(fac.Transition(st_1, [ - fac.UpdateInstruction(cc_0, False) ])) - transitions.append(fac.Transition(st_2, [ - fac.UpdateInstruction(cc_0, False) ])) - st_0._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_1, [ - fac.UpdateInstruction(cc_1, True) ])) - transitions.append(fac.Transition(st_2, [ - fac.UpdateInstruction(cc_1, False) ])) - st_1._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_2, [ - fac.UpdateInstruction(cc_2, True) ])) - st_2._set_transitionSet(transitions) - return fac.Automaton(states, counters, True, containing_state=None) -AutomationType._Automaton = _BuildAutomaton_32() - - - - -def _BuildAutomaton_33 (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_33 - del _BuildAutomaton_33 - import pyxb.utils.fac as fac - - counters = set() - cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - counters.add(cc_0) - states = [] - final_update = set() - final_update.add(fac.UpdateInstruction(cc_0, False)) - symbol = pyxb.binding.content.ElementUse(IncompatiblePairType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - transitions = [] - transitions.append(fac.Transition(st_0, [ - fac.UpdateInstruction(cc_0, True) ])) - st_0._set_transitionSet(transitions) - return fac.Automaton(states, counters, True, containing_state=None) -IncompatiblePairType._Automaton = _BuildAutomaton_33() - - - - -AutomationConstraintType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Automations'), CTD_ANON_7, scope=AutomationConstraintType, documentation='Names of automations that are all similarly constrained', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 389, 10))) - -def _BuildAutomaton_34 (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_34 - del _BuildAutomaton_34 - import pyxb.utils.fac as fac - - counters = set() - cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - counters.add(cc_0) - cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 389, 10)) - counters.add(cc_1) - states = [] - final_update = set() - final_update.add(fac.UpdateInstruction(cc_0, False)) - symbol = pyxb.binding.content.ElementUse(AutomationConstraintType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_1, False)) - symbol = pyxb.binding.content.ElementUse(AutomationConstraintType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Automations')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 389, 10)) - st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_1) - transitions = [] - transitions.append(fac.Transition(st_0, [ - fac.UpdateInstruction(cc_0, True) ])) - transitions.append(fac.Transition(st_1, [ - fac.UpdateInstruction(cc_0, False) ])) - st_0._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_1, [ - fac.UpdateInstruction(cc_1, True) ])) - st_1._set_transitionSet(transitions) - return fac.Automaton(states, counters, True, containing_state=None) -AutomationConstraintType._Automaton = _BuildAutomaton_34() - - - - -CTD_ANON_23._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Analogs'), CTD_ANON_8, scope=CTD_ANON_23, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 511, 20))) - -def _BuildAutomaton_35 (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_35 - del _BuildAutomaton_35 - import pyxb.utils.fac as fac - - counters = set() - cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - counters.add(cc_0) - states = [] - final_update = None - symbol = pyxb.binding.content.ElementUse(CTD_ANON_23._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - final_update = set() - symbol = pyxb.binding.content.ElementUse(CTD_ANON_23._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Analogs')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 511, 20)) - st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_1) - transitions = [] - transitions.append(fac.Transition(st_0, [ - fac.UpdateInstruction(cc_0, True) ])) - transitions.append(fac.Transition(st_1, [ - fac.UpdateInstruction(cc_0, False) ])) - st_0._set_transitionSet(transitions) - transitions = [] - st_1._set_transitionSet(transitions) - return fac.Automaton(states, counters, False, containing_state=None) -CTD_ANON_23._Automaton = _BuildAutomaton_35() - - - - -StatsContinuousDistType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'SampleSize'), pyxb.binding.datatypes.int, scope=StatsContinuousDistType, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 628, 10))) - -StatsContinuousDistType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'SampleMean'), pyxb.binding.datatypes.float, scope=StatsContinuousDistType, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 629, 10))) - -StatsContinuousDistType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'SampleMed'), pyxb.binding.datatypes.float, scope=StatsContinuousDistType, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 630, 10))) - -StatsContinuousDistType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'SampleStd'), pyxb.binding.datatypes.float, scope=StatsContinuousDistType, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 631, 10))) - -StatsContinuousDistType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Sample95thPct'), pyxb.binding.datatypes.float, scope=StatsContinuousDistType, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 632, 10))) - -StatsContinuousDistType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'SampleN50'), pyxb.binding.datatypes.float, scope=StatsContinuousDistType, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 633, 10))) - -StatsContinuousDistType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'NumBins'), pyxb.binding.datatypes.int, scope=StatsContinuousDistType, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 634, 10))) - -StatsContinuousDistType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'BinCounts'), CTD_ANON_14, scope=StatsContinuousDistType, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 635, 10))) - -StatsContinuousDistType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'BinWidth'), pyxb.binding.datatypes.float, scope=StatsContinuousDistType, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 642, 10))) - -StatsContinuousDistType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'MinOutlierValue'), pyxb.binding.datatypes.float, scope=StatsContinuousDistType, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 643, 10))) - -StatsContinuousDistType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'MinBinValue'), pyxb.binding.datatypes.float, scope=StatsContinuousDistType, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 644, 10))) - -StatsContinuousDistType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'MaxBinValue'), pyxb.binding.datatypes.float, scope=StatsContinuousDistType, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 645, 10))) - -StatsContinuousDistType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'MaxOutlierValue'), pyxb.binding.datatypes.float, scope=StatsContinuousDistType, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 646, 10))) - -StatsContinuousDistType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'MetricDescription'), pyxb.binding.datatypes.string, scope=StatsContinuousDistType, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 647, 10))) - -def _BuildAutomaton_36 (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_36 - del _BuildAutomaton_36 - import pyxb.utils.fac as fac - - counters = set() - cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - counters.add(cc_0) - cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 633, 10)) - counters.add(cc_1) - cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 643, 10)) - counters.add(cc_2) - cc_3 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 644, 10)) - counters.add(cc_3) - cc_4 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 645, 10)) - counters.add(cc_4) - cc_5 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 646, 10)) - counters.add(cc_5) - states = [] - final_update = None - symbol = pyxb.binding.content.ElementUse(StatsContinuousDistType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - final_update = None - symbol = pyxb.binding.content.ElementUse(StatsContinuousDistType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'SampleSize')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 628, 10)) - st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_1) - final_update = None - symbol = pyxb.binding.content.ElementUse(StatsContinuousDistType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'SampleMean')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 629, 10)) - st_2 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_2) - final_update = None - symbol = pyxb.binding.content.ElementUse(StatsContinuousDistType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'SampleMed')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 630, 10)) - st_3 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_3) - final_update = None - symbol = pyxb.binding.content.ElementUse(StatsContinuousDistType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'SampleStd')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 631, 10)) - st_4 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_4) - final_update = None - symbol = pyxb.binding.content.ElementUse(StatsContinuousDistType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Sample95thPct')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 632, 10)) - st_5 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_5) - final_update = None - symbol = pyxb.binding.content.ElementUse(StatsContinuousDistType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'SampleN50')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 633, 10)) - st_6 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_6) - final_update = None - symbol = pyxb.binding.content.ElementUse(StatsContinuousDistType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'NumBins')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 634, 10)) - st_7 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_7) - final_update = None - symbol = pyxb.binding.content.ElementUse(StatsContinuousDistType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'BinCounts')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 635, 10)) - st_8 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_8) - final_update = None - symbol = pyxb.binding.content.ElementUse(StatsContinuousDistType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'BinWidth')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 642, 10)) - st_9 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_9) - final_update = None - symbol = pyxb.binding.content.ElementUse(StatsContinuousDistType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'MinOutlierValue')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 643, 10)) - st_10 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_10) - final_update = None - symbol = pyxb.binding.content.ElementUse(StatsContinuousDistType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'MinBinValue')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 644, 10)) - st_11 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_11) - final_update = None - symbol = pyxb.binding.content.ElementUse(StatsContinuousDistType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'MaxBinValue')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 645, 10)) - st_12 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_12) - final_update = None - symbol = pyxb.binding.content.ElementUse(StatsContinuousDistType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'MaxOutlierValue')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 646, 10)) - st_13 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_13) - final_update = set() - symbol = pyxb.binding.content.ElementUse(StatsContinuousDistType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'MetricDescription')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 647, 10)) - st_14 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_14) - transitions = [] - transitions.append(fac.Transition(st_0, [ - fac.UpdateInstruction(cc_0, True) ])) - transitions.append(fac.Transition(st_1, [ - fac.UpdateInstruction(cc_0, False) ])) - st_0._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_2, [ - ])) - st_1._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_3, [ - ])) - st_2._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_4, [ - ])) - st_3._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_5, [ - ])) - st_4._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_6, [ - ])) - transitions.append(fac.Transition(st_7, [ - ])) - st_5._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_6, [ - fac.UpdateInstruction(cc_1, True) ])) - transitions.append(fac.Transition(st_7, [ - fac.UpdateInstruction(cc_1, False) ])) - st_6._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_8, [ - ])) - st_7._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_9, [ - ])) - st_8._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_10, [ - ])) - transitions.append(fac.Transition(st_11, [ - ])) - transitions.append(fac.Transition(st_12, [ - ])) - transitions.append(fac.Transition(st_13, [ - ])) - transitions.append(fac.Transition(st_14, [ - ])) - st_9._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_10, [ - fac.UpdateInstruction(cc_2, True) ])) - transitions.append(fac.Transition(st_11, [ - fac.UpdateInstruction(cc_2, False) ])) - transitions.append(fac.Transition(st_12, [ - fac.UpdateInstruction(cc_2, False) ])) - transitions.append(fac.Transition(st_13, [ - fac.UpdateInstruction(cc_2, False) ])) - transitions.append(fac.Transition(st_14, [ - fac.UpdateInstruction(cc_2, False) ])) - st_10._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_11, [ - fac.UpdateInstruction(cc_3, True) ])) - transitions.append(fac.Transition(st_12, [ - fac.UpdateInstruction(cc_3, False) ])) - transitions.append(fac.Transition(st_13, [ - fac.UpdateInstruction(cc_3, False) ])) - transitions.append(fac.Transition(st_14, [ - fac.UpdateInstruction(cc_3, False) ])) - st_11._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_12, [ - fac.UpdateInstruction(cc_4, True) ])) - transitions.append(fac.Transition(st_13, [ - fac.UpdateInstruction(cc_4, False) ])) - transitions.append(fac.Transition(st_14, [ - fac.UpdateInstruction(cc_4, False) ])) - st_12._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_13, [ - fac.UpdateInstruction(cc_5, True) ])) - transitions.append(fac.Transition(st_14, [ - fac.UpdateInstruction(cc_5, False) ])) - st_13._set_transitionSet(transitions) - transitions = [] - st_14._set_transitionSet(transitions) - return fac.Automaton(states, counters, False, containing_state=None) -StatsContinuousDistType._Automaton = _BuildAutomaton_36() - - - - -StatsDiscreteDistType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'NumBins'), pyxb.binding.datatypes.int, scope=StatsDiscreteDistType, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 660, 10))) - -StatsDiscreteDistType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'BinCounts'), CTD_ANON_15, scope=StatsDiscreteDistType, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 661, 10))) - -StatsDiscreteDistType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'MetricDescription'), pyxb.binding.datatypes.string, scope=StatsDiscreteDistType, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 668, 10))) - -StatsDiscreteDistType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'BinLabels'), CTD_ANON_16, scope=StatsDiscreteDistType, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 669, 10))) - -def _BuildAutomaton_37 (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_37 - del _BuildAutomaton_37 - import pyxb.utils.fac as fac - - counters = set() - cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - counters.add(cc_0) - states = [] - final_update = None - symbol = pyxb.binding.content.ElementUse(StatsDiscreteDistType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - final_update = None - symbol = pyxb.binding.content.ElementUse(StatsDiscreteDistType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'NumBins')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 660, 10)) - st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_1) - final_update = None - symbol = pyxb.binding.content.ElementUse(StatsDiscreteDistType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'BinCounts')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 661, 10)) - st_2 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_2) - final_update = None - symbol = pyxb.binding.content.ElementUse(StatsDiscreteDistType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'MetricDescription')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 668, 10)) - st_3 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_3) - final_update = set() - symbol = pyxb.binding.content.ElementUse(StatsDiscreteDistType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'BinLabels')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 669, 10)) - st_4 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_4) - transitions = [] - transitions.append(fac.Transition(st_0, [ - fac.UpdateInstruction(cc_0, True) ])) - transitions.append(fac.Transition(st_1, [ - fac.UpdateInstruction(cc_0, False) ])) - st_0._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_2, [ - ])) - st_1._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_3, [ - ])) - st_2._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_4, [ - ])) - st_3._set_transitionSet(transitions) - transitions = [] - st_4._set_transitionSet(transitions) - return fac.Automaton(states, counters, False, containing_state=None) -StatsDiscreteDistType._Automaton = _BuildAutomaton_37() - - - - -StatsTimeSeriesType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'TimeUnits'), pyxb.binding.datatypes.string, scope=StatsTimeSeriesType, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 687, 10))) - -StatsTimeSeriesType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ValueUnits'), pyxb.binding.datatypes.string, scope=StatsTimeSeriesType, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 688, 10))) - -StatsTimeSeriesType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'StartTime'), pyxb.binding.datatypes.float, scope=StatsTimeSeriesType, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 689, 10))) - -StatsTimeSeriesType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'MeasInterval'), pyxb.binding.datatypes.float, scope=StatsTimeSeriesType, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 690, 10))) - -StatsTimeSeriesType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Values'), CTD_ANON_17, scope=StatsTimeSeriesType, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 691, 10))) - -def _BuildAutomaton_38 (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_38 - del _BuildAutomaton_38 - import pyxb.utils.fac as fac - - counters = set() - cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - counters.add(cc_0) - cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 691, 10)) - counters.add(cc_1) - states = [] - final_update = None - symbol = pyxb.binding.content.ElementUse(StatsTimeSeriesType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - final_update = None - symbol = pyxb.binding.content.ElementUse(StatsTimeSeriesType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'TimeUnits')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 687, 10)) - st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_1) - final_update = None - symbol = pyxb.binding.content.ElementUse(StatsTimeSeriesType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'ValueUnits')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 688, 10)) - st_2 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_2) - final_update = None - symbol = pyxb.binding.content.ElementUse(StatsTimeSeriesType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'StartTime')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 689, 10)) - st_3 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_3) - final_update = set() - symbol = pyxb.binding.content.ElementUse(StatsTimeSeriesType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'MeasInterval')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 690, 10)) - st_4 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_4) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_1, False)) - symbol = pyxb.binding.content.ElementUse(StatsTimeSeriesType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Values')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 691, 10)) - st_5 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_5) - transitions = [] - transitions.append(fac.Transition(st_0, [ - fac.UpdateInstruction(cc_0, True) ])) - transitions.append(fac.Transition(st_1, [ - fac.UpdateInstruction(cc_0, False) ])) - st_0._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_2, [ - ])) - st_1._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_3, [ - ])) - st_2._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_4, [ - ])) - st_3._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_5, [ - ])) - st_4._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_5, [ - fac.UpdateInstruction(cc_1, True) ])) - st_5._set_transitionSet(transitions) - return fac.Automaton(states, counters, False, containing_state=None) -StatsTimeSeriesType._Automaton = _BuildAutomaton_38() - - - - -def _BuildAutomaton_39 (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_39 - del _BuildAutomaton_39 - import pyxb.utils.fac as fac - - counters = set() - cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - counters.add(cc_0) - cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 51, 10)) - counters.add(cc_1) - cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 56, 10)) - counters.add(cc_2) - cc_3 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 62, 10)) - counters.add(cc_3) - cc_4 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 63, 10)) - counters.add(cc_4) - states = [] - final_update = None - symbol = pyxb.binding.content.ElementUse(CTD_ANON_24._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - final_update = None - symbol = pyxb.binding.content.ElementUse(CTD_ANON_24._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Spectrum')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 10, 10)) - st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_1) - final_update = None - symbol = pyxb.binding.content.ElementUse(CTD_ANON_24._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'RelativeAmplitude')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 36, 10)) - st_2 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_2) - final_update = None - symbol = pyxb.binding.content.ElementUse(CTD_ANON_24._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'IntraPulseXsnCV')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 41, 10)) - st_3 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_3) - final_update = None - symbol = pyxb.binding.content.ElementUse(CTD_ANON_24._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'InterPulseXsnCV')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 46, 10)) - st_4 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_4) - final_update = None - symbol = pyxb.binding.content.ElementUse(CTD_ANON_24._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Pw2SlowStepRatio')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 51, 10)) - st_5 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_5) - final_update = None - symbol = pyxb.binding.content.ElementUse(CTD_ANON_24._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Ipd2SlowStepRatio')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 56, 10)) - st_6 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_6) - final_update = set() - symbol = pyxb.binding.content.ElementUse(CTD_ANON_24._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DiffusionXsnCV')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 61, 10)) - st_7 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_7) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_3, False)) - symbol = pyxb.binding.content.ElementUse(CTD_ANON_24._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'PulseWidthMeanSeconds')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 62, 10)) - st_8 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_8) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_4, False)) - symbol = pyxb.binding.content.ElementUse(CTD_ANON_24._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'IpdMeanSeconds')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 63, 10)) - st_9 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_9) - transitions = [] - transitions.append(fac.Transition(st_0, [ - fac.UpdateInstruction(cc_0, True) ])) - transitions.append(fac.Transition(st_1, [ - fac.UpdateInstruction(cc_0, False) ])) - st_0._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_2, [ - ])) - st_1._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_3, [ - ])) - st_2._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_4, [ - ])) - st_3._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_5, [ - ])) - transitions.append(fac.Transition(st_6, [ - ])) - transitions.append(fac.Transition(st_7, [ - ])) - st_4._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_5, [ - fac.UpdateInstruction(cc_1, True) ])) - transitions.append(fac.Transition(st_6, [ - fac.UpdateInstruction(cc_1, False) ])) - transitions.append(fac.Transition(st_7, [ - fac.UpdateInstruction(cc_1, False) ])) - st_5._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_6, [ - fac.UpdateInstruction(cc_2, True) ])) - transitions.append(fac.Transition(st_7, [ - fac.UpdateInstruction(cc_2, False) ])) - st_6._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_8, [ - ])) - transitions.append(fac.Transition(st_9, [ - ])) - st_7._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_8, [ - fac.UpdateInstruction(cc_3, True) ])) - transitions.append(fac.Transition(st_9, [ - fac.UpdateInstruction(cc_3, False) ])) - st_8._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_9, [ - fac.UpdateInstruction(cc_4, True) ])) - st_9._set_transitionSet(transitions) - return fac.Automaton(states, counters, False, containing_state=None) -CTD_ANON_24._Automaton = _BuildAutomaton_39() - - - - -def _BuildAutomaton_40 (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_40 - del _BuildAutomaton_40 - import pyxb.utils.fac as fac - - counters = set() - cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - counters.add(cc_0) - cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 51, 10)) - counters.add(cc_1) - cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 56, 10)) - counters.add(cc_2) - cc_3 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 62, 10)) - counters.add(cc_3) - cc_4 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 63, 10)) - counters.add(cc_4) - states = [] - final_update = None - symbol = pyxb.binding.content.ElementUse(CTD_ANON_25._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - final_update = None - symbol = pyxb.binding.content.ElementUse(CTD_ANON_25._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Spectrum')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 10, 10)) - st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_1) - final_update = None - symbol = pyxb.binding.content.ElementUse(CTD_ANON_25._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'RelativeAmplitude')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 36, 10)) - st_2 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_2) - final_update = None - symbol = pyxb.binding.content.ElementUse(CTD_ANON_25._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'IntraPulseXsnCV')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 41, 10)) - st_3 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_3) - final_update = None - symbol = pyxb.binding.content.ElementUse(CTD_ANON_25._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'InterPulseXsnCV')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 46, 10)) - st_4 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_4) - final_update = None - symbol = pyxb.binding.content.ElementUse(CTD_ANON_25._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Pw2SlowStepRatio')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 51, 10)) - st_5 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_5) - final_update = None - symbol = pyxb.binding.content.ElementUse(CTD_ANON_25._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Ipd2SlowStepRatio')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 56, 10)) - st_6 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_6) - final_update = set() - symbol = pyxb.binding.content.ElementUse(CTD_ANON_25._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DiffusionXsnCV')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 61, 10)) - st_7 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_7) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_3, False)) - symbol = pyxb.binding.content.ElementUse(CTD_ANON_25._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'PulseWidthMeanSeconds')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 62, 10)) - st_8 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_8) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_4, False)) - symbol = pyxb.binding.content.ElementUse(CTD_ANON_25._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'IpdMeanSeconds')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 63, 10)) - st_9 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_9) - transitions = [] - transitions.append(fac.Transition(st_0, [ - fac.UpdateInstruction(cc_0, True) ])) - transitions.append(fac.Transition(st_1, [ - fac.UpdateInstruction(cc_0, False) ])) - st_0._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_2, [ - ])) - st_1._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_3, [ - ])) - st_2._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_4, [ - ])) - st_3._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_5, [ - ])) - transitions.append(fac.Transition(st_6, [ - ])) - transitions.append(fac.Transition(st_7, [ - ])) - st_4._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_5, [ - fac.UpdateInstruction(cc_1, True) ])) - transitions.append(fac.Transition(st_6, [ - fac.UpdateInstruction(cc_1, False) ])) - transitions.append(fac.Transition(st_7, [ - fac.UpdateInstruction(cc_1, False) ])) - st_5._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_6, [ - fac.UpdateInstruction(cc_2, True) ])) - transitions.append(fac.Transition(st_7, [ - fac.UpdateInstruction(cc_2, False) ])) - st_6._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_8, [ - ])) - transitions.append(fac.Transition(st_9, [ - ])) - st_7._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_8, [ - fac.UpdateInstruction(cc_3, True) ])) - transitions.append(fac.Transition(st_9, [ - fac.UpdateInstruction(cc_3, False) ])) - st_8._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_9, [ - fac.UpdateInstruction(cc_4, True) ])) - st_9._set_transitionSet(transitions) - return fac.Automaton(states, counters, False, containing_state=None) -CTD_ANON_25._Automaton = _BuildAutomaton_40() - - - - -def _BuildAutomaton_41 (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_41 - del _BuildAutomaton_41 - import pyxb.utils.fac as fac - - counters = set() - cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - counters.add(cc_0) - states = [] - final_update = set() - final_update.add(fac.UpdateInstruction(cc_0, False)) - symbol = pyxb.binding.content.ElementUse(InputOutputDataType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - transitions = [] - transitions.append(fac.Transition(st_0, [ - fac.UpdateInstruction(cc_0, True) ])) - st_0._set_transitionSet(transitions) - return fac.Automaton(states, counters, True, containing_state=None) -InputOutputDataType._Automaton = _BuildAutomaton_41() - - - - -PartNumberType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Defaults'), DefaultsType, nillable=pyxb.binding.datatypes.boolean(1), scope=PartNumberType, documentation='Default paramaters and filters which may be applied to PartNumber types in order to constrain them via parameterization', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 1045, 2))) - -def _BuildAutomaton_42 (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_42 - del _BuildAutomaton_42 - import pyxb.utils.fac as fac - - counters = set() - cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - counters.add(cc_0) - cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 206, 10)) - counters.add(cc_1) - cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 457, 10)) - counters.add(cc_2) - states = [] - final_update = set() - final_update.add(fac.UpdateInstruction(cc_0, False)) - symbol = pyxb.binding.content.ElementUse(PartNumberType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_1, False)) - symbol = pyxb.binding.content.ElementUse(PartNumberType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'CheckSum')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 206, 10)) - st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_1) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_2, False)) - symbol = pyxb.binding.content.ElementUse(PartNumberType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Defaults')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 457, 10)) - st_2 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_2) - transitions = [] - transitions.append(fac.Transition(st_0, [ - fac.UpdateInstruction(cc_0, True) ])) - transitions.append(fac.Transition(st_1, [ - fac.UpdateInstruction(cc_0, False) ])) - transitions.append(fac.Transition(st_2, [ - fac.UpdateInstruction(cc_0, False) ])) - st_0._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_1, [ - fac.UpdateInstruction(cc_1, True) ])) - transitions.append(fac.Transition(st_2, [ - fac.UpdateInstruction(cc_1, False) ])) - st_1._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_2, [ - fac.UpdateInstruction(cc_2, True) ])) - st_2._set_transitionSet(transitions) - return fac.Automaton(states, counters, True, containing_state=None) -PartNumberType._Automaton = _BuildAutomaton_42() - - - - -def _BuildAutomaton_43 (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_43 - del _BuildAutomaton_43 - import pyxb.utils.fac as fac - - counters = set() - cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - counters.add(cc_0) - cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 206, 10)) - counters.add(cc_1) - states = [] - final_update = set() - final_update.add(fac.UpdateInstruction(cc_0, False)) - symbol = pyxb.binding.content.ElementUse(RecordedEventType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_1, False)) - symbol = pyxb.binding.content.ElementUse(RecordedEventType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'CheckSum')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 206, 10)) - st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_1) - transitions = [] - transitions.append(fac.Transition(st_0, [ - fac.UpdateInstruction(cc_0, True) ])) - transitions.append(fac.Transition(st_1, [ - fac.UpdateInstruction(cc_0, False) ])) - st_0._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_1, [ - fac.UpdateInstruction(cc_1, True) ])) - st_1._set_transitionSet(transitions) - return fac.Automaton(states, counters, True, containing_state=None) -RecordedEventType._Automaton = _BuildAutomaton_43() - - - - -SequencingChemistry._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'DyeSet'), CTD_ANON_23, scope=SequencingChemistry, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 506, 10))) - -def _BuildAutomaton_44 (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_44 - del _BuildAutomaton_44 - import pyxb.utils.fac as fac - - counters = set() - cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - counters.add(cc_0) - cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 206, 10)) - counters.add(cc_1) - states = [] - final_update = None - symbol = pyxb.binding.content.ElementUse(SequencingChemistry._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - final_update = None - symbol = pyxb.binding.content.ElementUse(SequencingChemistry._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'CheckSum')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 206, 10)) - st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_1) - final_update = set() - symbol = pyxb.binding.content.ElementUse(SequencingChemistry._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DyeSet')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 506, 10)) - st_2 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_2) - transitions = [] - transitions.append(fac.Transition(st_0, [ - fac.UpdateInstruction(cc_0, True) ])) - transitions.append(fac.Transition(st_1, [ - fac.UpdateInstruction(cc_0, False) ])) - transitions.append(fac.Transition(st_2, [ - fac.UpdateInstruction(cc_0, False) ])) - st_0._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_1, [ - fac.UpdateInstruction(cc_1, True) ])) - transitions.append(fac.Transition(st_2, [ - fac.UpdateInstruction(cc_1, False) ])) - st_1._set_transitionSet(transitions) - transitions = [] - st_2._set_transitionSet(transitions) - return fac.Automaton(states, counters, False, containing_state=None) -SequencingChemistry._Automaton = _BuildAutomaton_44() - - - - -SequencingChemistryConfig._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Analogs'), CTD_ANON_10, scope=SequencingChemistryConfig, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 544, 10))) - -SequencingChemistryConfig._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'DefaultLaserSetPoint'), pyxb.binding.datatypes.float, scope=SequencingChemistryConfig, documentation="The laser power at the input couple, needed to achieve predefined performance requirements based on a median 'golden' SMRT Cell.", location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 551, 10))) - -SequencingChemistryConfig._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'HqrfMethod'), pyxb.binding.datatypes.string, scope=SequencingChemistryConfig, documentation='The method to be used by HQRF (High Quality Region Finder) in the basecaller.', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 556, 10))) - -SequencingChemistryConfig._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'SNRCut'), pyxb.binding.datatypes.float, scope=SequencingChemistryConfig, documentation='The SNRCut is applied in PPA (baz2bam) as a read-quality filter.', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 561, 10))) - -SequencingChemistryConfig._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'TargetSNR'), CTD_ANON_11, scope=SequencingChemistryConfig, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 566, 10))) - -SequencingChemistryConfig._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'DefaultMinimumPkMid'), pyxb.binding.datatypes.float, scope=SequencingChemistryConfig, documentation='The default minimum PkMid to use when setting laser power to optimize sequencing signal level.', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 574, 10))) - -SequencingChemistryConfig._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ReferenceSnr'), pyxb.binding.datatypes.float, scope=SequencingChemistryConfig, documentation='The nominal or default SNR of the reference analog under the chemistry and detection configuration.', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 579, 10))) - -SequencingChemistryConfig._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ReferenceSpectrum'), CTD_ANON_12, scope=SequencingChemistryConfig, documentation='The nominal or default spectrum of the reference analog under the chemistry and detection configuration. The spectrum is a vector of probabilities, given in the order of increasing filter-bin wavelength, that light emitted by the analog will fall in the corresponding filter bin of the instrument detection system. By convention, the values are normalized to sum to 1.', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 584, 10))) - -SequencingChemistryConfig._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'EffectiveLoadingPercent'), pyxb.binding.datatypes.float, scope=SequencingChemistryConfig, documentation='The largest conceivable loading percentage for this chemistry.', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 612, 10))) - -def _BuildAutomaton_45 (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_45 - del _BuildAutomaton_45 - import pyxb.utils.fac as fac - - counters = set() - cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - counters.add(cc_0) - cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 206, 10)) - counters.add(cc_1) - states = [] - final_update = None - symbol = pyxb.binding.content.ElementUse(SequencingChemistryConfig._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - final_update = None - symbol = pyxb.binding.content.ElementUse(SequencingChemistryConfig._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'CheckSum')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 206, 10)) - st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_1) - final_update = None - symbol = pyxb.binding.content.ElementUse(SequencingChemistryConfig._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Analogs')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 544, 10)) - st_2 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_2) - final_update = None - symbol = pyxb.binding.content.ElementUse(SequencingChemistryConfig._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DefaultLaserSetPoint')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 551, 10)) - st_3 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_3) - final_update = None - symbol = pyxb.binding.content.ElementUse(SequencingChemistryConfig._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'HqrfMethod')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 556, 10)) - st_4 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_4) - final_update = None - symbol = pyxb.binding.content.ElementUse(SequencingChemistryConfig._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'SNRCut')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 561, 10)) - st_5 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_5) - final_update = None - symbol = pyxb.binding.content.ElementUse(SequencingChemistryConfig._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'TargetSNR')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 566, 10)) - st_6 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_6) - final_update = None - symbol = pyxb.binding.content.ElementUse(SequencingChemistryConfig._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DefaultMinimumPkMid')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 574, 10)) - st_7 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_7) - final_update = None - symbol = pyxb.binding.content.ElementUse(SequencingChemistryConfig._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'ReferenceSnr')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 579, 10)) - st_8 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_8) - final_update = None - symbol = pyxb.binding.content.ElementUse(SequencingChemistryConfig._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'ReferenceSpectrum')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 584, 10)) - st_9 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_9) - final_update = set() - symbol = pyxb.binding.content.ElementUse(SequencingChemistryConfig._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'EffectiveLoadingPercent')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 612, 10)) - st_10 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_10) - transitions = [] - transitions.append(fac.Transition(st_0, [ - fac.UpdateInstruction(cc_0, True) ])) - transitions.append(fac.Transition(st_1, [ - fac.UpdateInstruction(cc_0, False) ])) - transitions.append(fac.Transition(st_2, [ - fac.UpdateInstruction(cc_0, False) ])) - st_0._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_1, [ - fac.UpdateInstruction(cc_1, True) ])) - transitions.append(fac.Transition(st_2, [ - fac.UpdateInstruction(cc_1, False) ])) - st_1._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_3, [ - ])) - st_2._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_4, [ - ])) - st_3._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_5, [ - ])) - st_4._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_6, [ - ])) - st_5._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_7, [ - ])) - st_6._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_8, [ - ])) - st_7._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_9, [ - ])) - st_8._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_10, [ - ])) - st_9._set_transitionSet(transitions) - transitions = [] - st_10._set_transitionSet(transitions) - return fac.Automaton(states, counters, False, containing_state=None) -SequencingChemistryConfig._Automaton = _BuildAutomaton_45() - - - - -IndexedDataType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ExternalResources'), CTD_ANON_4, scope=IndexedDataType, documentation='Pointers to data that do not reside inside the parent structure', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 280, 2))) - -IndexedDataType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'FileIndices'), CTD_ANON_5, scope=IndexedDataType, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 299, 10))) - -def _BuildAutomaton_46 (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_46 - del _BuildAutomaton_46 - import pyxb.utils.fac as fac - - counters = set() - cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - counters.add(cc_0) - cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 299, 10)) - counters.add(cc_1) - cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 310, 10)) - counters.add(cc_2) - states = [] - final_update = set() - final_update.add(fac.UpdateInstruction(cc_0, False)) - symbol = pyxb.binding.content.ElementUse(IndexedDataType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_1, False)) - symbol = pyxb.binding.content.ElementUse(IndexedDataType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'FileIndices')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 299, 10)) - st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_1) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_2, False)) - symbol = pyxb.binding.content.ElementUse(IndexedDataType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'ExternalResources')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 310, 10)) - st_2 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_2) - transitions = [] - transitions.append(fac.Transition(st_0, [ - fac.UpdateInstruction(cc_0, True) ])) - transitions.append(fac.Transition(st_1, [ - fac.UpdateInstruction(cc_0, False) ])) - transitions.append(fac.Transition(st_2, [ - fac.UpdateInstruction(cc_0, False) ])) - st_0._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_1, [ - fac.UpdateInstruction(cc_1, True) ])) - transitions.append(fac.Transition(st_2, [ - fac.UpdateInstruction(cc_1, False) ])) - st_1._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_2, [ - fac.UpdateInstruction(cc_2, True) ])) - st_2._set_transitionSet(transitions) - return fac.Automaton(states, counters, True, containing_state=None) -IndexedDataType._Automaton = _BuildAutomaton_46() - - - - -SupplyKitBinding._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Control'), SupplyKitControl, scope=SupplyKitBinding, documentation='Defines the binding kit internal control name. Present when used, otherwise not used if not defined. ', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 709, 10))) - -SupplyKitBinding._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'IsControlUsed'), pyxb.binding.datatypes.boolean, scope=SupplyKitBinding, documentation='True if the control was used during run, otherwise false. ', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 714, 10))) - -def _BuildAutomaton_47 (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_47 - del _BuildAutomaton_47 - import pyxb.utils.fac as fac - - counters = set() - cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - counters.add(cc_0) - cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 206, 10)) - counters.add(cc_1) - cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 457, 10)) - counters.add(cc_2) - cc_3 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 709, 10)) - counters.add(cc_3) - cc_4 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 714, 10)) - counters.add(cc_4) - states = [] - final_update = set() - final_update.add(fac.UpdateInstruction(cc_0, False)) - symbol = pyxb.binding.content.ElementUse(SupplyKitBinding._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_1, False)) - symbol = pyxb.binding.content.ElementUse(SupplyKitBinding._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'CheckSum')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 206, 10)) - st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_1) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_2, False)) - symbol = pyxb.binding.content.ElementUse(SupplyKitBinding._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Defaults')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 457, 10)) - st_2 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_2) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_3, False)) - symbol = pyxb.binding.content.ElementUse(SupplyKitBinding._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Control')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 709, 10)) - st_3 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_3) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_4, False)) - symbol = pyxb.binding.content.ElementUse(SupplyKitBinding._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'IsControlUsed')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 714, 10)) - st_4 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_4) - transitions = [] - transitions.append(fac.Transition(st_0, [ - fac.UpdateInstruction(cc_0, True) ])) - transitions.append(fac.Transition(st_1, [ - fac.UpdateInstruction(cc_0, False) ])) - transitions.append(fac.Transition(st_2, [ - fac.UpdateInstruction(cc_0, False) ])) - transitions.append(fac.Transition(st_3, [ - fac.UpdateInstruction(cc_0, False) ])) - transitions.append(fac.Transition(st_4, [ - fac.UpdateInstruction(cc_0, False) ])) - st_0._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_1, [ - fac.UpdateInstruction(cc_1, True) ])) - transitions.append(fac.Transition(st_2, [ - fac.UpdateInstruction(cc_1, False) ])) - transitions.append(fac.Transition(st_3, [ - fac.UpdateInstruction(cc_1, False) ])) - transitions.append(fac.Transition(st_4, [ - fac.UpdateInstruction(cc_1, False) ])) - st_1._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_2, [ - fac.UpdateInstruction(cc_2, True) ])) - transitions.append(fac.Transition(st_3, [ - fac.UpdateInstruction(cc_2, False) ])) - transitions.append(fac.Transition(st_4, [ - fac.UpdateInstruction(cc_2, False) ])) - st_2._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_3, [ - fac.UpdateInstruction(cc_3, True) ])) - transitions.append(fac.Transition(st_4, [ - fac.UpdateInstruction(cc_3, False) ])) - st_3._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_4, [ - fac.UpdateInstruction(cc_4, True) ])) - st_4._set_transitionSet(transitions) - return fac.Automaton(states, counters, True, containing_state=None) -SupplyKitBinding._Automaton = _BuildAutomaton_47() - - - - -SupplyKitCellPack._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ChipLayout'), pyxb.binding.datatypes.string, scope=SupplyKitCellPack, documentation='Defines the internal chip layout name, if any. ', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 730, 10))) - -def _BuildAutomaton_48 (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_48 - del _BuildAutomaton_48 - import pyxb.utils.fac as fac - - counters = set() - cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - counters.add(cc_0) - cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 206, 10)) - counters.add(cc_1) - cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 457, 10)) - counters.add(cc_2) - cc_3 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 730, 10)) - counters.add(cc_3) - states = [] - final_update = set() - final_update.add(fac.UpdateInstruction(cc_0, False)) - symbol = pyxb.binding.content.ElementUse(SupplyKitCellPack._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_1, False)) - symbol = pyxb.binding.content.ElementUse(SupplyKitCellPack._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'CheckSum')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 206, 10)) - st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_1) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_2, False)) - symbol = pyxb.binding.content.ElementUse(SupplyKitCellPack._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Defaults')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 457, 10)) - st_2 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_2) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_3, False)) - symbol = pyxb.binding.content.ElementUse(SupplyKitCellPack._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'ChipLayout')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 730, 10)) - st_3 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_3) - transitions = [] - transitions.append(fac.Transition(st_0, [ - fac.UpdateInstruction(cc_0, True) ])) - transitions.append(fac.Transition(st_1, [ - fac.UpdateInstruction(cc_0, False) ])) - transitions.append(fac.Transition(st_2, [ - fac.UpdateInstruction(cc_0, False) ])) - transitions.append(fac.Transition(st_3, [ - fac.UpdateInstruction(cc_0, False) ])) - st_0._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_1, [ - fac.UpdateInstruction(cc_1, True) ])) - transitions.append(fac.Transition(st_2, [ - fac.UpdateInstruction(cc_1, False) ])) - transitions.append(fac.Transition(st_3, [ - fac.UpdateInstruction(cc_1, False) ])) - st_1._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_2, [ - fac.UpdateInstruction(cc_2, True) ])) - transitions.append(fac.Transition(st_3, [ - fac.UpdateInstruction(cc_2, False) ])) - st_2._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_3, [ - fac.UpdateInstruction(cc_3, True) ])) - st_3._set_transitionSet(transitions) - return fac.Automaton(states, counters, True, containing_state=None) -SupplyKitCellPack._Automaton = _BuildAutomaton_48() - - - - -SupplyKitControl._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'InternalControlName'), pyxb.binding.datatypes.string, scope=SupplyKitControl, documentation='Defines the internal control name, if any. ', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 756, 10))) - -SupplyKitControl._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'CustomSequence'), pyxb.binding.datatypes.string, nillable=pyxb.binding.datatypes.boolean(1), scope=SupplyKitControl, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 761, 10))) - -def _BuildAutomaton_49 (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_49 - del _BuildAutomaton_49 - import pyxb.utils.fac as fac - - counters = set() - cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - counters.add(cc_0) - cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 206, 10)) - counters.add(cc_1) - cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 457, 10)) - counters.add(cc_2) - cc_3 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 756, 10)) - counters.add(cc_3) - cc_4 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 761, 10)) - counters.add(cc_4) - states = [] - final_update = set() - final_update.add(fac.UpdateInstruction(cc_0, False)) - symbol = pyxb.binding.content.ElementUse(SupplyKitControl._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_1, False)) - symbol = pyxb.binding.content.ElementUse(SupplyKitControl._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'CheckSum')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 206, 10)) - st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_1) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_2, False)) - symbol = pyxb.binding.content.ElementUse(SupplyKitControl._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Defaults')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 457, 10)) - st_2 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_2) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_3, False)) - symbol = pyxb.binding.content.ElementUse(SupplyKitControl._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'InternalControlName')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 756, 10)) - st_3 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_3) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_4, False)) - symbol = pyxb.binding.content.ElementUse(SupplyKitControl._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'CustomSequence')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 761, 10)) - st_4 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_4) - transitions = [] - transitions.append(fac.Transition(st_0, [ - fac.UpdateInstruction(cc_0, True) ])) - transitions.append(fac.Transition(st_1, [ - fac.UpdateInstruction(cc_0, False) ])) - transitions.append(fac.Transition(st_2, [ - fac.UpdateInstruction(cc_0, False) ])) - transitions.append(fac.Transition(st_3, [ - fac.UpdateInstruction(cc_0, False) ])) - transitions.append(fac.Transition(st_4, [ - fac.UpdateInstruction(cc_0, False) ])) - st_0._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_1, [ - fac.UpdateInstruction(cc_1, True) ])) - transitions.append(fac.Transition(st_2, [ - fac.UpdateInstruction(cc_1, False) ])) - transitions.append(fac.Transition(st_3, [ - fac.UpdateInstruction(cc_1, False) ])) - transitions.append(fac.Transition(st_4, [ - fac.UpdateInstruction(cc_1, False) ])) - st_1._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_2, [ - fac.UpdateInstruction(cc_2, True) ])) - transitions.append(fac.Transition(st_3, [ - fac.UpdateInstruction(cc_2, False) ])) - transitions.append(fac.Transition(st_4, [ - fac.UpdateInstruction(cc_2, False) ])) - st_2._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_3, [ - fac.UpdateInstruction(cc_3, True) ])) - transitions.append(fac.Transition(st_4, [ - fac.UpdateInstruction(cc_3, False) ])) - st_3._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_4, [ - fac.UpdateInstruction(cc_4, True) ])) - st_4._set_transitionSet(transitions) - return fac.Automaton(states, counters, True, containing_state=None) -SupplyKitControl._Automaton = _BuildAutomaton_49() - - - - -SupplyKitTemplate._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'LeftAdaptorSequence'), pyxb.binding.datatypes.string, scope=SupplyKitTemplate, documentation='Left adapter DNA sequence.', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 773, 10))) - -SupplyKitTemplate._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'LeftPrimerSequence'), pyxb.binding.datatypes.string, scope=SupplyKitTemplate, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 778, 10))) - -SupplyKitTemplate._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'RightAdaptorSequence'), pyxb.binding.datatypes.string, scope=SupplyKitTemplate, documentation='Right adapter DNA sequence. If not specified, a symmetric adapter model is inferred, where the left adapter sequence is used wherever needed.', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 779, 10))) - -SupplyKitTemplate._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'RightPrimerSequence'), pyxb.binding.datatypes.string, scope=SupplyKitTemplate, documentation='Right primaer sequence. If not specified, a symmetric model is inferred, where the left primer sequence is used wherever needed.', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 784, 10))) - -def _BuildAutomaton_50 (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_50 - del _BuildAutomaton_50 - import pyxb.utils.fac as fac - - counters = set() - cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - counters.add(cc_0) - cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 206, 10)) - counters.add(cc_1) - cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 457, 10)) - counters.add(cc_2) - cc_3 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 773, 10)) - counters.add(cc_3) - cc_4 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 778, 10)) - counters.add(cc_4) - cc_5 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 779, 10)) - counters.add(cc_5) - cc_6 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 784, 10)) - counters.add(cc_6) - states = [] - final_update = set() - final_update.add(fac.UpdateInstruction(cc_0, False)) - symbol = pyxb.binding.content.ElementUse(SupplyKitTemplate._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_1, False)) - symbol = pyxb.binding.content.ElementUse(SupplyKitTemplate._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'CheckSum')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 206, 10)) - st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_1) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_2, False)) - symbol = pyxb.binding.content.ElementUse(SupplyKitTemplate._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Defaults')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 457, 10)) - st_2 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_2) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_3, False)) - symbol = pyxb.binding.content.ElementUse(SupplyKitTemplate._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'LeftAdaptorSequence')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 773, 10)) - st_3 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_3) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_4, False)) - symbol = pyxb.binding.content.ElementUse(SupplyKitTemplate._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'LeftPrimerSequence')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 778, 10)) - st_4 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_4) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_5, False)) - symbol = pyxb.binding.content.ElementUse(SupplyKitTemplate._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'RightAdaptorSequence')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 779, 10)) - st_5 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_5) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_6, False)) - symbol = pyxb.binding.content.ElementUse(SupplyKitTemplate._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'RightPrimerSequence')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 784, 10)) - st_6 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_6) - transitions = [] - transitions.append(fac.Transition(st_0, [ - fac.UpdateInstruction(cc_0, True) ])) - transitions.append(fac.Transition(st_1, [ - fac.UpdateInstruction(cc_0, False) ])) - transitions.append(fac.Transition(st_2, [ - fac.UpdateInstruction(cc_0, False) ])) - transitions.append(fac.Transition(st_3, [ - fac.UpdateInstruction(cc_0, False) ])) - transitions.append(fac.Transition(st_4, [ - fac.UpdateInstruction(cc_0, False) ])) - transitions.append(fac.Transition(st_5, [ - fac.UpdateInstruction(cc_0, False) ])) - transitions.append(fac.Transition(st_6, [ - fac.UpdateInstruction(cc_0, False) ])) - st_0._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_1, [ - fac.UpdateInstruction(cc_1, True) ])) - transitions.append(fac.Transition(st_2, [ - fac.UpdateInstruction(cc_1, False) ])) - transitions.append(fac.Transition(st_3, [ - fac.UpdateInstruction(cc_1, False) ])) - transitions.append(fac.Transition(st_4, [ - fac.UpdateInstruction(cc_1, False) ])) - transitions.append(fac.Transition(st_5, [ - fac.UpdateInstruction(cc_1, False) ])) - transitions.append(fac.Transition(st_6, [ - fac.UpdateInstruction(cc_1, False) ])) - st_1._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_2, [ - fac.UpdateInstruction(cc_2, True) ])) - transitions.append(fac.Transition(st_3, [ - fac.UpdateInstruction(cc_2, False) ])) - transitions.append(fac.Transition(st_4, [ - fac.UpdateInstruction(cc_2, False) ])) - transitions.append(fac.Transition(st_5, [ - fac.UpdateInstruction(cc_2, False) ])) - transitions.append(fac.Transition(st_6, [ - fac.UpdateInstruction(cc_2, False) ])) - st_2._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_3, [ - fac.UpdateInstruction(cc_3, True) ])) - transitions.append(fac.Transition(st_4, [ - fac.UpdateInstruction(cc_3, False) ])) - transitions.append(fac.Transition(st_5, [ - fac.UpdateInstruction(cc_3, False) ])) - transitions.append(fac.Transition(st_6, [ - fac.UpdateInstruction(cc_3, False) ])) - st_3._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_4, [ - fac.UpdateInstruction(cc_4, True) ])) - transitions.append(fac.Transition(st_5, [ - fac.UpdateInstruction(cc_4, False) ])) - transitions.append(fac.Transition(st_6, [ - fac.UpdateInstruction(cc_4, False) ])) - st_4._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_5, [ - fac.UpdateInstruction(cc_5, True) ])) - transitions.append(fac.Transition(st_6, [ - fac.UpdateInstruction(cc_5, False) ])) - st_5._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_6, [ - fac.UpdateInstruction(cc_6, True) ])) - st_6._set_transitionSet(transitions) - return fac.Automaton(states, counters, True, containing_state=None) -SupplyKitTemplate._Automaton = _BuildAutomaton_50() - - - - -def _BuildAutomaton_51 (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_51 - del _BuildAutomaton_51 - import pyxb.utils.fac as fac - - counters = set() - cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - counters.add(cc_0) - cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 299, 10)) - counters.add(cc_1) - cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 310, 10)) - counters.add(cc_2) - states = [] - final_update = set() - final_update.add(fac.UpdateInstruction(cc_0, False)) - symbol = pyxb.binding.content.ElementUse(CTD_ANON_26._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_1, False)) - symbol = pyxb.binding.content.ElementUse(CTD_ANON_26._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'FileIndices')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 299, 10)) - st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_1) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_2, False)) - symbol = pyxb.binding.content.ElementUse(CTD_ANON_26._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'ExternalResources')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 310, 10)) - st_2 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_2) - transitions = [] - transitions.append(fac.Transition(st_0, [ - fac.UpdateInstruction(cc_0, True) ])) - transitions.append(fac.Transition(st_1, [ - fac.UpdateInstruction(cc_0, False) ])) - transitions.append(fac.Transition(st_2, [ - fac.UpdateInstruction(cc_0, False) ])) - st_0._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_1, [ - fac.UpdateInstruction(cc_1, True) ])) - transitions.append(fac.Transition(st_2, [ - fac.UpdateInstruction(cc_1, False) ])) - st_1._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_2, [ - fac.UpdateInstruction(cc_2, True) ])) - st_2._set_transitionSet(transitions) - return fac.Automaton(states, counters, True, containing_state=None) -CTD_ANON_26._Automaton = _BuildAutomaton_51() - --- a/pbcore/io/dataset/pyxb/_pbmeta.py +++ /dev/null @@ -1,2967 +0,0 @@ -# pbcore/io/dataset/pyxb/_pbmeta.py -# -*- coding: utf-8 -*- -# PyXB bindings for NM:9efc6641c22b876b2d5ab7b8523f84c3396b188b -# Generated 2020-05-05 09:21:48.251689 by PyXB version 1.2.6 using Python 3.7.3.final.0 -# Namespace http://pacificbiosciences.com/PacBioCollectionMetadata.xsd [xmlns:pbmeta] - -from __future__ import unicode_literals -import pyxb -import pyxb.binding -import pyxb.binding.saxer -import io -import pyxb.utils.utility -import pyxb.utils.domutils -import sys -import pyxb.utils.six as _six -# Unique identifier for bindings created at the same time -_GenerationUID = pyxb.utils.utility.UniqueIdentifier('urn:uuid:84ba9ef6-8eec-11ea-9839-005056871a22') - -# Version of PyXB used to generate the bindings -_PyXBVersion = '1.2.6' -# Generated bindings are not compatible across PyXB versions -if pyxb.__version__ != _PyXBVersion: - raise pyxb.PyXBVersionError(_PyXBVersion) - -# A holder for module-level binding classes so we can access them from -# inside class definitions where property names may conflict. -_module_typeBindings = pyxb.utils.utility.Object() - -# Import bindings for namespaces imported into schema -import pyxb.binding.datatypes -import _pbbase as _ImportedBinding__pbbase -import _pbsample as _ImportedBinding__pbsample -import _pbrk as _ImportedBinding__pbrk - -# NOTE: All namespace declarations are reserved within the binding -Namespace = pyxb.namespace.NamespaceForURI('http://pacificbiosciences.com/PacBioCollectionMetadata.xsd', create_if_missing=True) -Namespace.configureCategories(['typeBinding', 'elementBinding']) -_Namespace_pbbase = _ImportedBinding__pbbase.Namespace -_Namespace_pbbase.configureCategories(['typeBinding', 'elementBinding']) -_Namespace_pbsample = _ImportedBinding__pbsample.Namespace -_Namespace_pbsample.configureCategories(['typeBinding', 'elementBinding']) - -def CreateFromDocument (xml_text, default_namespace=None, location_base=None): - """Parse the given XML and use the document element to create a - Python instance. - - @param xml_text An XML document. This should be data (Python 2 - str or Python 3 bytes), or a text (Python 2 unicode or Python 3 - str) in the L{pyxb._InputEncoding} encoding. - - @keyword default_namespace The L{pyxb.Namespace} instance to use as the - default namespace where there is no default namespace in scope. - If unspecified or C{None}, the namespace of the module containing - this function will be used. - - @keyword location_base: An object to be recorded as the base of all - L{pyxb.utils.utility.Location} instances associated with events and - objects handled by the parser. You might pass the URI from which - the document was obtained. - """ - - if pyxb.XMLStyle_saxer != pyxb._XMLStyle: - dom = pyxb.utils.domutils.StringToDOM(xml_text) - return CreateFromDOM(dom.documentElement, default_namespace=default_namespace) - if default_namespace is None: - default_namespace = Namespace.fallbackNamespace() - saxer = pyxb.binding.saxer.make_parser(fallback_namespace=default_namespace, location_base=location_base) - handler = saxer.getContentHandler() - xmld = xml_text - if isinstance(xmld, _six.text_type): - xmld = xmld.encode(pyxb._InputEncoding) - saxer.parse(io.BytesIO(xmld)) - instance = handler.rootObject() - return instance - -def CreateFromDOM (node, default_namespace=None): - """Create a Python instance from the given DOM node. - The node tag must correspond to an element declaration in this module. - - @deprecated: Forcing use of DOM interface is unnecessary; use L{CreateFromDocument}.""" - if default_namespace is None: - default_namespace = Namespace.fallbackNamespace() - return pyxb.binding.basis.element.AnyCreateFromDOM(node, default_namespace) - - -# Atomic simple type: [anonymous] -class STD_ANON (pyxb.binding.datatypes.string): - - """An atomic simple type.""" - - _ExpandedName = None - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 54, 22) - _Documentation = None -STD_ANON._CF_length = pyxb.binding.facets.CF_length(value=pyxb.binding.datatypes.nonNegativeInteger(36)) -STD_ANON._CF_pattern = pyxb.binding.facets.CF_pattern() -STD_ANON._CF_pattern.addPattern(pattern='[a-fA-F0-9]{8}-[a-fA-F0-9]{4}-[a-fA-F0-9]{4}-[a-fA-F0-9]{4}-[a-fA-F0-9]{12}') -STD_ANON._InitializeFacetMap(STD_ANON._CF_length, - STD_ANON._CF_pattern) -_module_typeBindings.STD_ANON = STD_ANON - -# Atomic simple type: [anonymous] -class STD_ANON_ (pyxb.binding.datatypes.string, pyxb.binding.basis.enumeration_mixin): - - """An atomic simple type.""" - - _ExpandedName = None - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 483, 16) - _Documentation = None -STD_ANON_._CF_enumeration = pyxb.binding.facets.CF_enumeration(value_datatype=STD_ANON_, enum_prefix=None) -STD_ANON_.Pulses = STD_ANON_._CF_enumeration.addEnumeration(unicode_value='Pulses', tag='Pulses') -STD_ANON_.Bases = STD_ANON_._CF_enumeration.addEnumeration(unicode_value='Bases', tag='Bases') -STD_ANON_.Bases_Without_QVs = STD_ANON_._CF_enumeration.addEnumeration(unicode_value='Bases_Without_QVs', tag='Bases_Without_QVs') -STD_ANON_._InitializeFacetMap(STD_ANON_._CF_enumeration) -_module_typeBindings.STD_ANON_ = STD_ANON_ - -# Atomic simple type: [anonymous] -class STD_ANON_2 (pyxb.binding.datatypes.string, pyxb.binding.basis.enumeration_mixin): - - """An atomic simple type.""" - - _ExpandedName = None - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 495, 16) - _Documentation = None -STD_ANON_2._CF_enumeration = pyxb.binding.facets.CF_enumeration(value_datatype=STD_ANON_2, enum_prefix=None) -STD_ANON_2.Minimal = STD_ANON_2._CF_enumeration.addEnumeration(unicode_value='Minimal', tag='Minimal') -STD_ANON_2.High = STD_ANON_2._CF_enumeration.addEnumeration(unicode_value='High', tag='High') -STD_ANON_2.None_ = STD_ANON_2._CF_enumeration.addEnumeration(unicode_value='None', tag='None_') -STD_ANON_2._InitializeFacetMap(STD_ANON_2._CF_enumeration) -_module_typeBindings.STD_ANON_2 = STD_ANON_2 - -# Atomic simple type: [anonymous] -class STD_ANON_3 (pyxb.binding.datatypes.string): - - """An atomic simple type.""" - - _ExpandedName = None - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 513, 22) - _Documentation = None -STD_ANON_3._CF_pattern = pyxb.binding.facets.CF_pattern() -STD_ANON_3._CF_pattern.addPattern(pattern='([a-zA-Z0-9_\\-])*') -STD_ANON_3._InitializeFacetMap(STD_ANON_3._CF_pattern) -_module_typeBindings.STD_ANON_3 = STD_ANON_3 - -# Atomic simple type: [anonymous] -class STD_ANON_4 (pyxb.binding.datatypes.string, pyxb.binding.basis.enumeration_mixin): - - """An atomic simple type.""" - - _ExpandedName = None - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 523, 22) - _Documentation = None -STD_ANON_4._CF_enumeration = pyxb.binding.facets.CF_enumeration(value_datatype=STD_ANON_4, enum_prefix=None) -STD_ANON_4.RSYNC = STD_ANON_4._CF_enumeration.addEnumeration(unicode_value='RSYNC', tag='RSYNC') -STD_ANON_4.SRS = STD_ANON_4._CF_enumeration.addEnumeration(unicode_value='SRS', tag='SRS') -STD_ANON_4.NFS = STD_ANON_4._CF_enumeration.addEnumeration(unicode_value='NFS', tag='NFS') -STD_ANON_4._InitializeFacetMap(STD_ANON_4._CF_enumeration) -_module_typeBindings.STD_ANON_4 = STD_ANON_4 - -# Atomic simple type: {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}PapOutputFile -class PapOutputFile (pyxb.binding.datatypes.string, pyxb.binding.basis.enumeration_mixin): - - """Defines a list of available file output types from primary output that can be copied out to the CollectionPathUri. The types Pulse, Base, Fasta, and Fastq are for legacy use only.""" - - _ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'PapOutputFile') - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 617, 2) - _Documentation = 'Defines a list of available file output types from primary output that can be copied out to the CollectionPathUri. The types Pulse, Base, Fasta, and Fastq are for legacy use only.' -PapOutputFile._CF_enumeration = pyxb.binding.facets.CF_enumeration(value_datatype=PapOutputFile, enum_prefix=None) -PapOutputFile.None_ = PapOutputFile._CF_enumeration.addEnumeration(unicode_value='None', tag='None_') -PapOutputFile.Trace = PapOutputFile._CF_enumeration.addEnumeration(unicode_value='Trace', tag='Trace') -PapOutputFile.Fasta = PapOutputFile._CF_enumeration.addEnumeration(unicode_value='Fasta', tag='Fasta') -PapOutputFile.Baz = PapOutputFile._CF_enumeration.addEnumeration(unicode_value='Baz', tag='Baz') -PapOutputFile.Bam = PapOutputFile._CF_enumeration.addEnumeration(unicode_value='Bam', tag='Bam') -PapOutputFile.DarkFrame = PapOutputFile._CF_enumeration.addEnumeration(unicode_value='DarkFrame', tag='DarkFrame') -PapOutputFile.StatsH5 = PapOutputFile._CF_enumeration.addEnumeration(unicode_value='StatsH5', tag='StatsH5') -PapOutputFile.Loading = PapOutputFile._CF_enumeration.addEnumeration(unicode_value='Loading', tag='Loading') -PapOutputFile._InitializeFacetMap(PapOutputFile._CF_enumeration) -Namespace.addCategoryObject('typeBinding', 'PapOutputFile', PapOutputFile) -_module_typeBindings.PapOutputFile = PapOutputFile - -# Complex type [anonymous] with content type ELEMENT_ONLY -class CTD_ANON (pyxb.binding.basis.complexTypeDefinition): - """Root element of a standalone CollectionMetadata file.""" - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = None - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 14, 4) - _ElementMap = {} - _AttributeMap = {} - # Base type is pyxb.binding.datatypes.anyType - - # Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}CollectionMetadata uses Python identifier CollectionMetadata - __CollectionMetadata = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'CollectionMetadata'), 'CollectionMetadata', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_httppacificbiosciences_comPacBioCollectionMetadata_xsdCollectionMetadata', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 30, 2), ) - - - CollectionMetadata = property(__CollectionMetadata.value, __CollectionMetadata.set, None, 'Root-level element for the metadata. The purpose of which is to contain pertinent instrument information related to the conditions present during a movie acquisition. It also serves to provide key pieces of information for integration with primary and secondary analysis. This file is associated with 1 movie. ') - - _ElementMap.update({ - __CollectionMetadata.name() : __CollectionMetadata - }) - _AttributeMap.update({ - - }) -_module_typeBindings.CTD_ANON = CTD_ANON - - -# Complex type [anonymous] with content type ELEMENT_ONLY -class CTD_ANON_ (pyxb.binding.basis.complexTypeDefinition): - """A set of acquisition definitions""" - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = None - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 24, 4) - _ElementMap = {} - _AttributeMap = {} - # Base type is pyxb.binding.datatypes.anyType - - # Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}CollectionMetadata uses Python identifier CollectionMetadata - __CollectionMetadata = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'CollectionMetadata'), 'CollectionMetadata', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON__httppacificbiosciences_comPacBioCollectionMetadata_xsdCollectionMetadata', True, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 30, 2), ) - - - CollectionMetadata = property(__CollectionMetadata.value, __CollectionMetadata.set, None, 'Root-level element for the metadata. The purpose of which is to contain pertinent instrument information related to the conditions present during a movie acquisition. It also serves to provide key pieces of information for integration with primary and secondary analysis. This file is associated with 1 movie. ') - - _ElementMap.update({ - __CollectionMetadata.name() : __CollectionMetadata - }) - _AttributeMap.update({ - - }) -_module_typeBindings.CTD_ANON_ = CTD_ANON_ - - -# Complex type [anonymous] with content type ELEMENT_ONLY -class CTD_ANON_2 (pyxb.binding.basis.complexTypeDefinition): - """Subcomponents involved in the generation of the data""" - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = None - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 171, 14) - _ElementMap = {} - _AttributeMap = {} - # Base type is pyxb.binding.datatypes.anyType - - # Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}VersionInfo uses Python identifier VersionInfo - __VersionInfo = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'VersionInfo'), 'VersionInfo', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_2_httppacificbiosciences_comPacBioCollectionMetadata_xsdVersionInfo', True, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 173, 18), ) - - - VersionInfo = property(__VersionInfo.value, __VersionInfo.set, None, 'Each component should list its name and version attribute') - - _ElementMap.update({ - __VersionInfo.name() : __VersionInfo - }) - _AttributeMap.update({ - - }) -_module_typeBindings.CTD_ANON_2 = CTD_ANON_2 - - -# Complex type [anonymous] with content type ELEMENT_ONLY -class CTD_ANON_3 (pyxb.binding.basis.complexTypeDefinition): - """Information related to an instrument run. A run can contain multiple chips, wells, and movies. """ - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = None - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 206, 4) - _ElementMap = {} - _AttributeMap = {} - # Base type is pyxb.binding.datatypes.anyType - - # Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}TimeStampedName uses Python identifier TimeStampedName - __TimeStampedName = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'TimeStampedName'), 'TimeStampedName', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_3_httppacificbiosciences_comPacBioCollectionMetadata_xsdTimeStampedName', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 208, 8), ) - - - TimeStampedName = property(__TimeStampedName.value, __TimeStampedName.set, None, 'A unique identifier for this run. Format is r[sid]_[iname]_[ts]. Where [id] is a system generated id and [iname] is the instrument name and [ts] is a timestamp YYMMDD Example: r000123_00117_100713 ') - - - # Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}Name uses Python identifier Name - __Name = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Name'), 'Name', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_3_httppacificbiosciences_comPacBioCollectionMetadata_xsdName', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 213, 8), ) - - - Name = property(__Name.value, __Name.set, None, 'Assigned name for a run, which consists of multiple wells. There is no constraint on the uniqueness of this data. ') - - - # Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}CreatedBy uses Python identifier CreatedBy - __CreatedBy = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'CreatedBy'), 'CreatedBy', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_3_httppacificbiosciences_comPacBioCollectionMetadata_xsdCreatedBy', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 218, 8), ) - - - CreatedBy = property(__CreatedBy.value, __CreatedBy.set, None, 'Who created the run. ') - - - # Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}WhenCreated uses Python identifier WhenCreated - __WhenCreated = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'WhenCreated'), 'WhenCreated', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_3_httppacificbiosciences_comPacBioCollectionMetadata_xsdWhenCreated', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 223, 8), ) - - - WhenCreated = property(__WhenCreated.value, __WhenCreated.set, None, 'Date and time of when the overall run was created in the system. ') - - - # Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}StartedBy uses Python identifier StartedBy - __StartedBy = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'StartedBy'), 'StartedBy', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_3_httppacificbiosciences_comPacBioCollectionMetadata_xsdStartedBy', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 228, 8), ) - - - StartedBy = property(__StartedBy.value, __StartedBy.set, None, 'Who started the run. Could be different from who created it. ') - - - # Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}WhenStarted uses Python identifier WhenStarted - __WhenStarted = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'WhenStarted'), 'WhenStarted', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_3_httppacificbiosciences_comPacBioCollectionMetadata_xsdWhenStarted', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 233, 8), ) - - - WhenStarted = property(__WhenStarted.value, __WhenStarted.set, None, 'Date and time of when the overall run was started. ') - - - # Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}WhenCompleted uses Python identifier WhenCompleted - __WhenCompleted = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'WhenCompleted'), 'WhenCompleted', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_3_httppacificbiosciences_comPacBioCollectionMetadata_xsdWhenCompleted', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 238, 8), ) - - - WhenCompleted = property(__WhenCompleted.value, __WhenCompleted.set, None, 'Date and time of when the overall run was completed. ') - - _ElementMap.update({ - __TimeStampedName.name() : __TimeStampedName, - __Name.name() : __Name, - __CreatedBy.name() : __CreatedBy, - __WhenCreated.name() : __WhenCreated, - __StartedBy.name() : __StartedBy, - __WhenStarted.name() : __WhenStarted, - __WhenCompleted.name() : __WhenCompleted - }) - _AttributeMap.update({ - - }) -_module_typeBindings.CTD_ANON_3 = CTD_ANON_3 - - -# Complex type [anonymous] with content type ELEMENT_ONLY -class CTD_ANON_4 (pyxb.binding.basis.complexTypeDefinition): - """A movie corresponds to one acquisition for a chip, one set (look) and one strobe. """ - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = None - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 250, 4) - _ElementMap = {} - _AttributeMap = {} - # Base type is pyxb.binding.datatypes.anyType - - # Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}WhenStarted uses Python identifier WhenStarted - __WhenStarted = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'WhenStarted'), 'WhenStarted', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_4_httppacificbiosciences_comPacBioCollectionMetadata_xsdWhenStarted', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 252, 8), ) - - - WhenStarted = property(__WhenStarted.value, __WhenStarted.set, None, 'Date and time of when this movie acquisition started. ') - - - # Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}DurationInSec uses Python identifier DurationInSec - __DurationInSec = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'DurationInSec'), 'DurationInSec', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_4_httppacificbiosciences_comPacBioCollectionMetadata_xsdDurationInSec', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 257, 8), ) - - - DurationInSec = property(__DurationInSec.value, __DurationInSec.set, None, 'The actual length of the movie acquisition (in seconds), irrespective of the movie duration specified by an automation parameter. ') - - - # Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}Number uses Python identifier Number - __Number = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Number'), 'Number', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_4_httppacificbiosciences_comPacBioCollectionMetadata_xsdNumber', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 262, 8), ) - - - Number = property(__Number.value, __Number.set, None, "The number of this movie within the set (i.e., look). This is unique when combined with the 'SetNumber'. ") - - _ElementMap.update({ - __WhenStarted.name() : __WhenStarted, - __DurationInSec.name() : __DurationInSec, - __Number.name() : __Number - }) - _AttributeMap.update({ - - }) -_module_typeBindings.CTD_ANON_4 = CTD_ANON_4 - - -# Complex type [anonymous] with content type ELEMENT_ONLY -class CTD_ANON_5 (pyxb.binding.basis.complexTypeDefinition): - """Container for the expired consumable data. """ - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = None - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 274, 4) - _ElementMap = {} - _AttributeMap = {} - # Base type is pyxb.binding.datatypes.anyType - - # Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}TemplatePrepKitPastExpiration uses Python identifier TemplatePrepKitPastExpiration - __TemplatePrepKitPastExpiration = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'TemplatePrepKitPastExpiration'), 'TemplatePrepKitPastExpiration', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_5_httppacificbiosciences_comPacBioCollectionMetadata_xsdTemplatePrepKitPastExpiration', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 276, 8), ) - - - TemplatePrepKitPastExpiration = property(__TemplatePrepKitPastExpiration.value, __TemplatePrepKitPastExpiration.set, None, 'Number of days past expiration the template prep kit was (if at all). ') - - - # Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}BindingKitPastExpiration uses Python identifier BindingKitPastExpiration - __BindingKitPastExpiration = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'BindingKitPastExpiration'), 'BindingKitPastExpiration', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_5_httppacificbiosciences_comPacBioCollectionMetadata_xsdBindingKitPastExpiration', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 281, 8), ) - - - BindingKitPastExpiration = property(__BindingKitPastExpiration.value, __BindingKitPastExpiration.set, None, 'Number of days past expiration the binding kit was (if at all). ') - - - # Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}CellPacPastExpiration uses Python identifier CellPacPastExpiration - __CellPacPastExpiration = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'CellPacPastExpiration'), 'CellPacPastExpiration', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_5_httppacificbiosciences_comPacBioCollectionMetadata_xsdCellPacPastExpiration', True, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 286, 8), ) - - - CellPacPastExpiration = property(__CellPacPastExpiration.value, __CellPacPastExpiration.set, None, 'Number of days past expiration the cell pac was (if at all). ') - - - # Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}SequencingKitPastExpiration uses Python identifier SequencingKitPastExpiration - __SequencingKitPastExpiration = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'SequencingKitPastExpiration'), 'SequencingKitPastExpiration', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_5_httppacificbiosciences_comPacBioCollectionMetadata_xsdSequencingKitPastExpiration', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 296, 8), ) - - - SequencingKitPastExpiration = property(__SequencingKitPastExpiration.value, __SequencingKitPastExpiration.set, None, 'Number of days past expiration the reagent kit was (if at all). ') - - - # Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}SequencingTube0PastExpiration uses Python identifier SequencingTube0PastExpiration - __SequencingTube0PastExpiration = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'SequencingTube0PastExpiration'), 'SequencingTube0PastExpiration', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_5_httppacificbiosciences_comPacBioCollectionMetadata_xsdSequencingTube0PastExpiration', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 301, 8), ) - - - SequencingTube0PastExpiration = property(__SequencingTube0PastExpiration.value, __SequencingTube0PastExpiration.set, None, 'Number of days past expiration the reagent tube 0 was (if at all). ') - - - # Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}SequencingTube1PastExpiration uses Python identifier SequencingTube1PastExpiration - __SequencingTube1PastExpiration = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'SequencingTube1PastExpiration'), 'SequencingTube1PastExpiration', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_5_httppacificbiosciences_comPacBioCollectionMetadata_xsdSequencingTube1PastExpiration', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 306, 8), ) - - - SequencingTube1PastExpiration = property(__SequencingTube1PastExpiration.value, __SequencingTube1PastExpiration.set, None, 'Number of days past expiration the reagent tube 1 was (if at all). ') - - _ElementMap.update({ - __TemplatePrepKitPastExpiration.name() : __TemplatePrepKitPastExpiration, - __BindingKitPastExpiration.name() : __BindingKitPastExpiration, - __CellPacPastExpiration.name() : __CellPacPastExpiration, - __SequencingKitPastExpiration.name() : __SequencingKitPastExpiration, - __SequencingTube0PastExpiration.name() : __SequencingTube0PastExpiration, - __SequencingTube1PastExpiration.name() : __SequencingTube1PastExpiration - }) - _AttributeMap.update({ - - }) -_module_typeBindings.CTD_ANON_5 = CTD_ANON_5 - - -# Complex type [anonymous] with content type ELEMENT_ONLY -class CTD_ANON_6 (pyxb.binding.basis.complexTypeDefinition): - """Container for the primary analysis related data. """ - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = None - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 408, 4) - _ElementMap = {} - _AttributeMap = {} - # Base type is pyxb.binding.datatypes.anyType - - # Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}SampleTrace uses Python identifier SampleTrace - __SampleTrace = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'SampleTrace'), 'SampleTrace', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_6_httppacificbiosciences_comPacBioCollectionMetadata_xsdSampleTrace', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 410, 8), ) - - - SampleTrace = property(__SampleTrace.value, __SampleTrace.set, None, 'Tag to indicate that the trace file will be sampled. ') - - - # Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}AutomationName uses Python identifier AutomationName - __AutomationName = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'AutomationName'), 'AutomationName', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_6_httppacificbiosciences_comPacBioCollectionMetadata_xsdAutomationName', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 429, 8), ) - - - AutomationName = property(__AutomationName.value, __AutomationName.set, None, 'Name of primary analysis protocol. ') - - - # Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}ConfigFileName uses Python identifier ConfigFileName - __ConfigFileName = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'ConfigFileName'), 'ConfigFileName', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_6_httppacificbiosciences_comPacBioCollectionMetadata_xsdConfigFileName', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 434, 8), ) - - - ConfigFileName = property(__ConfigFileName.value, __ConfigFileName.set, None, 'Name of primary analysis config file. ') - - - # Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}SequencingCondition uses Python identifier SequencingCondition - __SequencingCondition = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'SequencingCondition'), 'SequencingCondition', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_6_httppacificbiosciences_comPacBioCollectionMetadata_xsdSequencingCondition', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 439, 8), ) - - - SequencingCondition = property(__SequencingCondition.value, __SequencingCondition.set, None, 'A sequencing condition tag to be used by primary analysis, e.g., to select basecaller calibration or training parameters. ') - - - # Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}CCSOptions uses Python identifier CCSOptions - __CCSOptions = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'CCSOptions'), 'CCSOptions', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_6_httppacificbiosciences_comPacBioCollectionMetadata_xsdCCSOptions', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 444, 8), ) - - - CCSOptions = property(__CCSOptions.value, __CCSOptions.set, None, None) - - - # Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}OutputOptions uses Python identifier OutputOptions - __OutputOptions = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'OutputOptions'), 'OutputOptions', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_6_httppacificbiosciences_comPacBioCollectionMetadata_xsdOutputOptions', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 455, 8), ) - - - OutputOptions = property(__OutputOptions.value, __OutputOptions.set, None, None) - - _ElementMap.update({ - __SampleTrace.name() : __SampleTrace, - __AutomationName.name() : __AutomationName, - __ConfigFileName.name() : __ConfigFileName, - __SequencingCondition.name() : __SequencingCondition, - __CCSOptions.name() : __CCSOptions, - __OutputOptions.name() : __OutputOptions - }) - _AttributeMap.update({ - - }) -_module_typeBindings.CTD_ANON_6 = CTD_ANON_6 - - -# Complex type [anonymous] with content type ELEMENT_ONLY -class CTD_ANON_7 (pyxb.binding.basis.complexTypeDefinition): - """Tag to indicate that the trace file will be sampled. """ - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = None - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 414, 10) - _ElementMap = {} - _AttributeMap = {} - # Base type is pyxb.binding.datatypes.anyType - - # Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}TraceSamplingFactor uses Python identifier TraceSamplingFactor - __TraceSamplingFactor = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'TraceSamplingFactor'), 'TraceSamplingFactor', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_7_httppacificbiosciences_comPacBioCollectionMetadata_xsdTraceSamplingFactor', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 416, 14), ) - - - TraceSamplingFactor = property(__TraceSamplingFactor.value, __TraceSamplingFactor.set, None, 'Percentage of traces to sample. ') - - - # Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}FullPulseFile uses Python identifier FullPulseFile - __FullPulseFile = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'FullPulseFile'), 'FullPulseFile', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_7_httppacificbiosciences_comPacBioCollectionMetadata_xsdFullPulseFile', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 421, 14), ) - - - FullPulseFile = property(__FullPulseFile.value, __FullPulseFile.set, None, 'Whether full or sampled pulse file is transferred if requested. ') - - _ElementMap.update({ - __TraceSamplingFactor.name() : __TraceSamplingFactor, - __FullPulseFile.name() : __FullPulseFile - }) - _AttributeMap.update({ - - }) -_module_typeBindings.CTD_ANON_7 = CTD_ANON_7 - - -# Complex type [anonymous] with content type ELEMENT_ONLY -class CTD_ANON_8 (pyxb.binding.basis.complexTypeDefinition): - """Complex type [anonymous] with content type ELEMENT_ONLY""" - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = None - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 445, 10) - _ElementMap = {} - _AttributeMap = {} - # Base type is pyxb.binding.datatypes.anyType - - # Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}ExecutionMode uses Python identifier ExecutionMode - __ExecutionMode = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'ExecutionMode'), 'ExecutionMode', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_8_httppacificbiosciences_comPacBioCollectionMetadata_xsdExecutionMode', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 447, 14), ) - - - ExecutionMode = property(__ExecutionMode.value, __ExecutionMode.set, None, 'If set to OnInstrument, turns on CCS as part of Post-Primary Analysis and transfers the resulting ConsensusReadSet off-instrument. Not supported on Sequel I instruments.') - - _ElementMap.update({ - __ExecutionMode.name() : __ExecutionMode - }) - _AttributeMap.update({ - - }) -_module_typeBindings.CTD_ANON_8 = CTD_ANON_8 - - -# Complex type [anonymous] with content type ELEMENT_ONLY -class CTD_ANON_9 (pyxb.binding.basis.complexTypeDefinition): - """Complex type [anonymous] with content type ELEMENT_ONLY""" - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = None - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 456, 10) - _ElementMap = {} - _AttributeMap = {} - # Base type is pyxb.binding.datatypes.anyType - - # Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}ResultsFolder uses Python identifier ResultsFolder - __ResultsFolder = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'ResultsFolder'), 'ResultsFolder', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_9_httppacificbiosciences_comPacBioCollectionMetadata_xsdResultsFolder', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 458, 14), ) - - - ResultsFolder = property(__ResultsFolder.value, __ResultsFolder.set, None, "NOTE: not for customers. A sub-folder under the CollectionPath created by Primary Analysis. This is a field that will be updated by the primary analysis pipeline. The default (as created by homer) should be set to 'Reports_Sms' for now. Consumers of the data should be aware that they will find collection metadata (and trace files if acquisition is so-configured) at the CollectionPathUri, and all primary analysis results in the sub-folder PrimaryResultsFolder. ") - - - # Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}CollectionPathUri uses Python identifier CollectionPathUri - __CollectionPathUri = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'CollectionPathUri'), 'CollectionPathUri', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_9_httppacificbiosciences_comPacBioCollectionMetadata_xsdCollectionPathUri', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 463, 14), ) - - - CollectionPathUri = property(__CollectionPathUri.value, __CollectionPathUri.set, None, 'User-specified location of where the results should be copied after an analysis has been completed. ') - - - # Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}CopyFiles uses Python identifier CopyFiles - __CopyFiles = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'CopyFiles'), 'CopyFiles', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_9_httppacificbiosciences_comPacBioCollectionMetadata_xsdCopyFiles', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 468, 14), ) - - - CopyFiles = property(__CopyFiles.value, __CopyFiles.set, None, None) - - - # Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}Readout uses Python identifier Readout - __Readout = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Readout'), 'Readout', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_9_httppacificbiosciences_comPacBioCollectionMetadata_xsdReadout', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 479, 14), ) - - - Readout = property(__Readout.value, __Readout.set, None, 'BazIO Readout option; valid values are Bases (default) and Pulses') - - - # Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}MetricsVerbosity uses Python identifier MetricsVerbosity - __MetricsVerbosity = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'MetricsVerbosity'), 'MetricsVerbosity', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_9_httppacificbiosciences_comPacBioCollectionMetadata_xsdMetricsVerbosity', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 491, 14), ) - - - MetricsVerbosity = property(__MetricsVerbosity.value, __MetricsVerbosity.set, None, 'BazIO MetricsVerbosity option; valid values are Minimal (default), High, and None') - - - # Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}TransferResource uses Python identifier TransferResource - __TransferResource = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'TransferResource'), 'TransferResource', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_9_httppacificbiosciences_comPacBioCollectionMetadata_xsdTransferResource', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 503, 14), ) - - - TransferResource = property(__TransferResource.value, __TransferResource.set, None, 'Transfer Resource (optional for now, but will be made required when ICS implements this)') - - _ElementMap.update({ - __ResultsFolder.name() : __ResultsFolder, - __CollectionPathUri.name() : __CollectionPathUri, - __CopyFiles.name() : __CopyFiles, - __Readout.name() : __Readout, - __MetricsVerbosity.name() : __MetricsVerbosity, - __TransferResource.name() : __TransferResource - }) - _AttributeMap.update({ - - }) -_module_typeBindings.CTD_ANON_9 = CTD_ANON_9 - - -# Complex type [anonymous] with content type ELEMENT_ONLY -class CTD_ANON_10 (pyxb.binding.basis.complexTypeDefinition): - """Complex type [anonymous] with content type ELEMENT_ONLY""" - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = None - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 469, 16) - _ElementMap = {} - _AttributeMap = {} - # Base type is pyxb.binding.datatypes.anyType - - # Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}CollectionFileCopy uses Python identifier CollectionFileCopy - __CollectionFileCopy = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'CollectionFileCopy'), 'CollectionFileCopy', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_10_httppacificbiosciences_comPacBioCollectionMetadata_xsdCollectionFileCopy', True, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 471, 20), ) - - - CollectionFileCopy = property(__CollectionFileCopy.value, __CollectionFileCopy.set, None, 'Defines the set of files to be copied to the CollectionPathUri. 1 or more. ') - - _ElementMap.update({ - __CollectionFileCopy.name() : __CollectionFileCopy - }) - _AttributeMap.update({ - - }) -_module_typeBindings.CTD_ANON_10 = CTD_ANON_10 - - -# Complex type [anonymous] with content type ELEMENT_ONLY -class CTD_ANON_11 (pyxb.binding.basis.complexTypeDefinition): - """Transfer Resource (optional for now, but will be made required when ICS implements this)""" - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = None - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 507, 16) - _ElementMap = {} - _AttributeMap = {} - # Base type is pyxb.binding.datatypes.anyType - - # Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}Id uses Python identifier Id - __Id = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Id'), 'Id', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_11_httppacificbiosciences_comPacBioCollectionMetadata_xsdId', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 509, 20), ) - - - Id = property(__Id.value, __Id.set, None, 'Id of the Transfer Resource that is unique to the Scheme Type. A tuple of (TransferScheme, Id) will be globally unique') - - - # Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}TransferScheme uses Python identifier TransferScheme - __TransferScheme = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'TransferScheme'), 'TransferScheme', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_11_httppacificbiosciences_comPacBioCollectionMetadata_xsdTransferScheme', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 519, 20), ) - - - TransferScheme = property(__TransferScheme.value, __TransferScheme.set, None, 'Transfer Scheme type (this should be an enum Scheme of rsync, srs or nfs)') - - - # Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}Name uses Python identifier Name - __Name = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Name'), 'Name', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_11_httppacificbiosciences_comPacBioCollectionMetadata_xsdName', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 531, 20), ) - - - Name = property(__Name.value, __Name.set, None, 'Display Name of the Transfer Resource') - - - # Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}Description uses Python identifier Description - __Description = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Description'), 'Description', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_11_httppacificbiosciences_comPacBioCollectionMetadata_xsdDescription', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 536, 20), ) - - - Description = property(__Description.value, __Description.set, None, 'Description of the Transfer Resource') - - - # Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}DestPath uses Python identifier DestPath - __DestPath = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'DestPath'), 'DestPath', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_11_httppacificbiosciences_comPacBioCollectionMetadata_xsdDestPath', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 541, 20), ) - - - DestPath = property(__DestPath.value, __DestPath.set, None, 'Remote Root Destination Path of the Transfer Resource') - - - # Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}RelativePath uses Python identifier RelativePath - __RelativePath = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'RelativePath'), 'RelativePath', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_11_httppacificbiosciences_comPacBioCollectionMetadata_xsdRelativePath', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 546, 20), ) - - - RelativePath = property(__RelativePath.value, __RelativePath.set, None, 'Remote Relative Path of the Transfer Resource') - - _ElementMap.update({ - __Id.name() : __Id, - __TransferScheme.name() : __TransferScheme, - __Name.name() : __Name, - __Description.name() : __Description, - __DestPath.name() : __DestPath, - __RelativePath.name() : __RelativePath - }) - _AttributeMap.update({ - - }) -_module_typeBindings.CTD_ANON_11 = CTD_ANON_11 - - -# Complex type [anonymous] with content type ELEMENT_ONLY -class CTD_ANON_12 (pyxb.binding.basis.complexTypeDefinition): - """Container for the primary analysis related data. """ - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = None - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 565, 4) - _ElementMap = {} - _AttributeMap = {} - # Base type is pyxb.binding.datatypes.anyType - - # Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}AutomationName uses Python identifier AutomationName - __AutomationName = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'AutomationName'), 'AutomationName', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_12_httppacificbiosciences_comPacBioCollectionMetadata_xsdAutomationName', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 567, 8), ) - - - AutomationName = property(__AutomationName.value, __AutomationName.set, None, 'The secondary analysis protocol name specified in the sample sheet. Ignored by secondary. ') - - - # Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}AutomationParameters uses Python identifier AutomationParameters - __AutomationParameters = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'AutomationParameters'), 'AutomationParameters', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_12_httppacificbiosciences_comPacBioCollectionMetadata_xsdAutomationParameters', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 572, 8), ) - - - AutomationParameters = property(__AutomationParameters.value, __AutomationParameters.set, None, 'The parameters for secondary analysis specified in the sample sheet. Ignored by secondary. ') - - - # Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}CellCountInJob uses Python identifier CellCountInJob - __CellCountInJob = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'CellCountInJob'), 'CellCountInJob', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_12_httppacificbiosciences_comPacBioCollectionMetadata_xsdCellCountInJob', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 586, 8), ) - - - CellCountInJob = property(__CellCountInJob.value, __CellCountInJob.set, None, "The number of cells in this secondary analysis job, identified by the secondary analysis parameter 'JobName'. Supports automated secondary analysis. ") - - _ElementMap.update({ - __AutomationName.name() : __AutomationName, - __AutomationParameters.name() : __AutomationParameters, - __CellCountInJob.name() : __CellCountInJob - }) - _AttributeMap.update({ - - }) -_module_typeBindings.CTD_ANON_12 = CTD_ANON_12 - - -# Complex type [anonymous] with content type ELEMENT_ONLY -class CTD_ANON_13 (pyxb.binding.basis.complexTypeDefinition): - """The parameters for secondary analysis specified in the sample sheet. Ignored by secondary. """ - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = None - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 576, 10) - _ElementMap = {} - _AttributeMap = {} - # Base type is pyxb.binding.datatypes.anyType - - # Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}AutomationParameter uses Python identifier AutomationParameter - __AutomationParameter = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'AutomationParameter'), 'AutomationParameter', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_13_httppacificbiosciences_comPacBioCollectionMetadata_xsdAutomationParameter', True, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 578, 14), ) - - - AutomationParameter = property(__AutomationParameter.value, __AutomationParameter.set, None, 'One or more secondary analysis parameters, such as JobName, Workflow, etc..') - - _ElementMap.update({ - __AutomationParameter.name() : __AutomationParameter - }) - _AttributeMap.update({ - - }) -_module_typeBindings.CTD_ANON_13 = CTD_ANON_13 - - -# Complex type [anonymous] with content type SIMPLE -class CTD_ANON_14 (pyxb.binding.basis.complexTypeDefinition): - """One custom, possibly non-unique, key-value pair. """ - _TypeDefinition = pyxb.binding.datatypes.string - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_SIMPLE - _Abstract = False - _ExpandedName = None - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 604, 4) - _ElementMap = {} - _AttributeMap = {} - # Base type is pyxb.binding.datatypes.string - - # Attribute key uses Python identifier key - __key = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'key'), 'key', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_14_key', pyxb.binding.datatypes.string, required=True) - __key._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 607, 10) - __key._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 607, 10) - - key = property(__key.value, __key.set, None, 'Key (attribute) and Value (element content). ') - - - # Attribute label uses Python identifier label - __label = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'label'), 'label', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_14_label', pyxb.binding.datatypes.string) - __label._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 612, 10) - __label._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 612, 10) - - label = property(__label.value, __label.set, None, None) - - _ElementMap.update({ - - }) - _AttributeMap.update({ - __key.name() : __key, - __label.name() : __label - }) -_module_typeBindings.CTD_ANON_14 = CTD_ANON_14 - - -# Complex type [anonymous] with content type ELEMENT_ONLY -class CTD_ANON_15 (_ImportedBinding__pbbase.BaseEntityType): - """Contains information on the CCS dataset of the Collection""" - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = None - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 47, 14) - _ElementMap = _ImportedBinding__pbbase.BaseEntityType._ElementMap.copy() - _AttributeMap = _ImportedBinding__pbbase.BaseEntityType._AttributeMap.copy() - # Base type is _ImportedBinding__pbbase.BaseEntityType - - # Element Extensions ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Extensions) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Name inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Description inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Tags inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Format inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ResourceId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Version inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute CreatedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ModifiedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute UniqueId uses Python identifier UniqueId - __UniqueId = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'UniqueId'), 'UniqueId', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_15_UniqueId', _module_typeBindings.STD_ANON) - __UniqueId._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 50, 20) - __UniqueId._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 50, 20) - - UniqueId = property(__UniqueId.value, __UniqueId.set, None, 'UUID for the ConsensusReadSet generated by the instrument or SMRT Link (in pre-analysis mode).') - - _ElementMap.update({ - - }) - _AttributeMap.update({ - __UniqueId.name() : __UniqueId - }) -_module_typeBindings.CTD_ANON_15 = CTD_ANON_15 - - -# Complex type [anonymous] with content type ELEMENT_ONLY -class CTD_ANON_16 (_ImportedBinding__pbbase.BaseEntityType): - """Container for the sample related data. """ - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = None - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 318, 4) - _ElementMap = _ImportedBinding__pbbase.BaseEntityType._ElementMap.copy() - _AttributeMap = _ImportedBinding__pbbase.BaseEntityType._AttributeMap.copy() - # Base type is _ImportedBinding__pbbase.BaseEntityType - - # Element Extensions ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Extensions) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}WellName uses Python identifier WellName - __WellName = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'WellName'), 'WellName', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_16_httppacificbiosciences_comPacBioCollectionMetadata_xsdWellName', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 322, 12), ) - - - WellName = property(__WellName.value, __WellName.set, None, 'Identifies which well this sample came from (e.g., coordinate on a plate). ') - - - # Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}Concentration uses Python identifier Concentration - __Concentration = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Concentration'), 'Concentration', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_16_httppacificbiosciences_comPacBioCollectionMetadata_xsdConcentration', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 327, 12), ) - - - Concentration = property(__Concentration.value, __Concentration.set, None, 'Sample input concentration. ') - - - # Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}OnPlateLoadingConcentration uses Python identifier OnPlateLoadingConcentration - __OnPlateLoadingConcentration = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'OnPlateLoadingConcentration'), 'OnPlateLoadingConcentration', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_16_httppacificbiosciences_comPacBioCollectionMetadata_xsdOnPlateLoadingConcentration', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 332, 12), ) - - - OnPlateLoadingConcentration = property(__OnPlateLoadingConcentration.value, __OnPlateLoadingConcentration.set, None, 'On plate loading concentration. ') - - - # Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}InsertSize uses Python identifier InsertSize - __InsertSize = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'InsertSize'), 'InsertSize', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_16_httppacificbiosciences_comPacBioCollectionMetadata_xsdInsertSize', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 337, 12), ) - - - InsertSize = property(__InsertSize.value, __InsertSize.set, None, 'Length of the sheared template, e.g. 500, 2000, 30000') - - - # Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}IsoSeq uses Python identifier IsoSeq - __IsoSeq = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'IsoSeq'), 'IsoSeq', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_16_httppacificbiosciences_comPacBioCollectionMetadata_xsdIsoSeq', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 342, 12), ) - - - IsoSeq = property(__IsoSeq.value, __IsoSeq.set, None, 'Whether or not this is an Iso-Seq experiment (optional; defaults to false).') - - - # Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}IsCCS uses Python identifier IsCCS - __IsCCS = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'IsCCS'), 'IsCCS', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_16_httppacificbiosciences_comPacBioCollectionMetadata_xsdIsCCS', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 347, 12), ) - - - IsCCS = property(__IsCCS.value, __IsCCS.set, None, 'Whether or not the read type is CCS, true, or CLR, false.') - - - # Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}LoadingTarget uses Python identifier LoadingTarget - __LoadingTarget = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'LoadingTarget'), 'LoadingTarget', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_16_httppacificbiosciences_comPacBioCollectionMetadata_xsdLoadingTarget', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 352, 12), ) - - - LoadingTarget = property(__LoadingTarget.value, __LoadingTarget.set, None, 'Dynamic Loading Target') - - - # Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}MaxLoadingTime uses Python identifier MaxLoadingTime - __MaxLoadingTime = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'MaxLoadingTime'), 'MaxLoadingTime', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_16_httppacificbiosciences_comPacBioCollectionMetadata_xsdMaxLoadingTime', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 357, 12), ) - - - MaxLoadingTime = property(__MaxLoadingTime.value, __MaxLoadingTime.set, None, 'Dynamic Loading Maximum Loading Time') - - - # Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}SampleReuseEnabled uses Python identifier SampleReuseEnabled - __SampleReuseEnabled = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'SampleReuseEnabled'), 'SampleReuseEnabled', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_16_httppacificbiosciences_comPacBioCollectionMetadata_xsdSampleReuseEnabled', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 362, 12), ) - - - SampleReuseEnabled = property(__SampleReuseEnabled.value, __SampleReuseEnabled.set, None, 'Whether or not complex reuse is enabled for this well. ') - - - # Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}StageHotstartEnabled uses Python identifier StageHotstartEnabled - __StageHotstartEnabled = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'StageHotstartEnabled'), 'StageHotstartEnabled', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_16_httppacificbiosciences_comPacBioCollectionMetadata_xsdStageHotstartEnabled', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 367, 12), ) - - - StageHotstartEnabled = property(__StageHotstartEnabled.value, __StageHotstartEnabled.set, None, 'Whether or not hotstart at the stage is enabled for this well. ') - - - # Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}SizeSelectionEnabled uses Python identifier SizeSelectionEnabled - __SizeSelectionEnabled = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'SizeSelectionEnabled'), 'SizeSelectionEnabled', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_16_httppacificbiosciences_comPacBioCollectionMetadata_xsdSizeSelectionEnabled', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 372, 12), ) - - - SizeSelectionEnabled = property(__SizeSelectionEnabled.value, __SizeSelectionEnabled.set, None, 'Whether or not size selection is enabled for this well. ') - - - # Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}UseCount uses Python identifier UseCount - __UseCount = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'UseCount'), 'UseCount', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_16_httppacificbiosciences_comPacBioCollectionMetadata_xsdUseCount', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 377, 12), ) - - - UseCount = property(__UseCount.value, __UseCount.set, None, 'Count of usages for this batch of complex. ') - - - # Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}DNAControlComplex uses Python identifier DNAControlComplex - __DNAControlComplex = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'DNAControlComplex'), 'DNAControlComplex', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_16_httppacificbiosciences_comPacBioCollectionMetadata_xsdDNAControlComplex', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 382, 12), ) - - - DNAControlComplex = property(__DNAControlComplex.value, __DNAControlComplex.set, None, 'Indicating what kind (if any) control was used. ') - - - # Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}SampleSetupId uses Python identifier SampleSetupId - __SampleSetupId = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'SampleSetupId'), 'SampleSetupId', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_16_httppacificbiosciences_comPacBioCollectionMetadata_xsdSampleSetupId', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 387, 12), ) - - - SampleSetupId = property(__SampleSetupId.value, __SampleSetupId.set, None, 'Optional pointer to a Sample Setup record in SMRT Link') - - - # Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}BioSamplesCsv uses Python identifier BioSamplesCsv - __BioSamplesCsv = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'BioSamplesCsv'), 'BioSamplesCsv', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_16_httppacificbiosciences_comPacBioCollectionMetadata_xsdBioSamplesCsv', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 393, 12), ) - - - BioSamplesCsv = property(__BioSamplesCsv.value, __BioSamplesCsv.set, None, 'The name of the biosamples CSV.') - - - # Element {http://pacificbiosciences.com/PacBioSampleInfo.xsd}BioSamples uses Python identifier BioSamples - __BioSamples = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(_Namespace_pbsample, 'BioSamples'), 'BioSamples', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_16_httppacificbiosciences_comPacBioSampleInfo_xsdBioSamples', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioSampleInfo.xsd', 126, 2), ) - - - BioSamples = property(__BioSamples.value, __BioSamples.set, None, 'List of biological samples.') - - - # Attribute Name inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Description inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Tags inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Format inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ResourceId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Version inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute CreatedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ModifiedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - _ElementMap.update({ - __WellName.name() : __WellName, - __Concentration.name() : __Concentration, - __OnPlateLoadingConcentration.name() : __OnPlateLoadingConcentration, - __InsertSize.name() : __InsertSize, - __IsoSeq.name() : __IsoSeq, - __IsCCS.name() : __IsCCS, - __LoadingTarget.name() : __LoadingTarget, - __MaxLoadingTime.name() : __MaxLoadingTime, - __SampleReuseEnabled.name() : __SampleReuseEnabled, - __StageHotstartEnabled.name() : __StageHotstartEnabled, - __SizeSelectionEnabled.name() : __SizeSelectionEnabled, - __UseCount.name() : __UseCount, - __DNAControlComplex.name() : __DNAControlComplex, - __SampleSetupId.name() : __SampleSetupId, - __BioSamplesCsv.name() : __BioSamplesCsv, - __BioSamples.name() : __BioSamples - }) - _AttributeMap.update({ - - }) -_module_typeBindings.CTD_ANON_16 = CTD_ANON_16 - - -# Complex type [anonymous] with content type ELEMENT_ONLY -class CTD_ANON_17 (_ImportedBinding__pbbase.StrictEntityType): - """Root-level element for the metadata. The purpose of which is to contain pertinent instrument information related to the conditions present during a movie acquisition. It also serves to provide key pieces of information for integration with primary and secondary analysis. This file is associated with 1 movie. """ - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = None - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 34, 4) - _ElementMap = _ImportedBinding__pbbase.StrictEntityType._ElementMap.copy() - _AttributeMap = _ImportedBinding__pbbase.StrictEntityType._AttributeMap.copy() - # Base type is _ImportedBinding__pbbase.StrictEntityType - - # Element Extensions ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Extensions) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}MultiJobId uses Python identifier MultiJobId - __MultiJobId = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'MultiJobId'), 'MultiJobId', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_17_httppacificbiosciences_comPacBioCollectionMetadata_xsdMultiJobId', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 38, 12), ) - - - MultiJobId = property(__MultiJobId.value, __MultiJobId.set, None, 'Id of the SMRT Link MultiJob that will create Jobs to process the Demuxed SubreadSets of this Collection, if it is Barcoded.') - - - # Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}ConsensusReadSetRef uses Python identifier ConsensusReadSetRef - __ConsensusReadSetRef = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'ConsensusReadSetRef'), 'ConsensusReadSetRef', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_17_httppacificbiosciences_comPacBioCollectionMetadata_xsdConsensusReadSetRef', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 43, 12), ) - - - ConsensusReadSetRef = property(__ConsensusReadSetRef.value, __ConsensusReadSetRef.set, None, 'Contains information on the CCS dataset of the Collection') - - - # Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}InstCtrlVer uses Python identifier InstCtrlVer - __InstCtrlVer = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'InstCtrlVer'), 'InstCtrlVer', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_17_httppacificbiosciences_comPacBioCollectionMetadata_xsdInstCtrlVer', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 65, 12), ) - - - InstCtrlVer = property(__InstCtrlVer.value, __InstCtrlVer.set, None, 'Instrument control software version. ') - - - # Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}SigProcVer uses Python identifier SigProcVer - __SigProcVer = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'SigProcVer'), 'SigProcVer', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_17_httppacificbiosciences_comPacBioCollectionMetadata_xsdSigProcVer', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 70, 12), ) - - - SigProcVer = property(__SigProcVer.value, __SigProcVer.set, None, 'Signal processing software version. ') - - - # Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}Automation uses Python identifier Automation - __Automation = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Automation'), 'Automation', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_17_httppacificbiosciences_comPacBioCollectionMetadata_xsdAutomation', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 92, 12), ) - - - Automation = property(__Automation.value, __Automation.set, None, 'Defines the collection workflow (e.g., robotic movement, movie acquisition) for a particular cell. ') - - - # Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}CollectionNumber uses Python identifier CollectionNumber - __CollectionNumber = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'CollectionNumber'), 'CollectionNumber', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_17_httppacificbiosciences_comPacBioCollectionMetadata_xsdCollectionNumber', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 97, 12), ) - - - CollectionNumber = property(__CollectionNumber.value, __CollectionNumber.set, None, 'Collection number for this plate well. Sample from one plate well or tube can be distributed to more than one cell. ') - - - # Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}CellIndex uses Python identifier CellIndex - __CellIndex = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'CellIndex'), 'CellIndex', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_17_httppacificbiosciences_comPacBioCollectionMetadata_xsdCellIndex', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 102, 12), ) - - - CellIndex = property(__CellIndex.value, __CellIndex.set, None, 'The zero-based index of this particular cell within the cell tray. Likely to be in the range of [0-3]') - - - # Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}SetNumber uses Python identifier SetNumber - __SetNumber = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'SetNumber'), 'SetNumber', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_17_httppacificbiosciences_comPacBioCollectionMetadata_xsdSetNumber', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 107, 12), ) - - - SetNumber = property(__SetNumber.value, __SetNumber.set, None, 'Formerly known as the look number. 1 - N. Defaults to 1. 0 if the look is unknown. ') - - - # Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}CellPac uses Python identifier CellPac - __CellPac = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'CellPac'), 'CellPac', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_17_httppacificbiosciences_comPacBioCollectionMetadata_xsdCellPac', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 112, 12), ) - - - CellPac = property(__CellPac.value, __CellPac.set, None, 'The SMRT cell packaging supply information. ') - - - # Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}ControlKit uses Python identifier ControlKit - __ControlKit = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'ControlKit'), 'ControlKit', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_17_httppacificbiosciences_comPacBioCollectionMetadata_xsdControlKit', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 117, 12), ) - - - ControlKit = property(__ControlKit.value, __ControlKit.set, None, 'Defines the DNA control used for this experiment. ') - - - # Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}TemplatePrepKit uses Python identifier TemplatePrepKit - __TemplatePrepKit = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'TemplatePrepKit'), 'TemplatePrepKit', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_17_httppacificbiosciences_comPacBioCollectionMetadata_xsdTemplatePrepKit', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 122, 12), ) - - - TemplatePrepKit = property(__TemplatePrepKit.value, __TemplatePrepKit.set, None, 'Defines the template (sample) prep kit used for this experiment. Can be used to get back to the primary and adapter used. ') - - - # Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}BindingKit uses Python identifier BindingKit - __BindingKit = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'BindingKit'), 'BindingKit', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_17_httppacificbiosciences_comPacBioCollectionMetadata_xsdBindingKit', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 127, 12), ) - - - BindingKit = property(__BindingKit.value, __BindingKit.set, None, 'The binding kit supply information. ') - - - # Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}SequencingKitPlate uses Python identifier SequencingKitPlate - __SequencingKitPlate = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'SequencingKitPlate'), 'SequencingKitPlate', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_17_httppacificbiosciences_comPacBioCollectionMetadata_xsdSequencingKitPlate', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 132, 12), ) - - - SequencingKitPlate = property(__SequencingKitPlate.value, __SequencingKitPlate.set, None, 'The sequencing kit supply information. ') - - - # Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}WashKitPlate uses Python identifier WashKitPlate - __WashKitPlate = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'WashKitPlate'), 'WashKitPlate', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_17_httppacificbiosciences_comPacBioCollectionMetadata_xsdWashKitPlate', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 137, 12), ) - - - WashKitPlate = property(__WashKitPlate.value, __WashKitPlate.set, None, 'The wash kit supply information. ') - - - # Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}PPAConfig uses Python identifier PPAConfig - __PPAConfig = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'PPAConfig'), 'PPAConfig', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_17_httppacificbiosciences_comPacBioCollectionMetadata_xsdPPAConfig', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 147, 12), ) - - - PPAConfig = property(__PPAConfig.value, __PPAConfig.set, None, 'The post-primary analysis-specific information. ') - - - # Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}ComponentVersions uses Python identifier ComponentVersions - __ComponentVersions = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'ComponentVersions'), 'ComponentVersions', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_17_httppacificbiosciences_comPacBioCollectionMetadata_xsdComponentVersions', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 167, 12), ) - - - ComponentVersions = property(__ComponentVersions.value, __ComponentVersions.set, None, 'Subcomponents involved in the generation of the data') - - - # Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}RunDetails uses Python identifier RunDetails - __RunDetails = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'RunDetails'), 'RunDetails', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_17_httppacificbiosciences_comPacBioCollectionMetadata_xsdRunDetails', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 202, 2), ) - - - RunDetails = property(__RunDetails.value, __RunDetails.set, None, 'Information related to an instrument run. A run can contain multiple chips, wells, and movies. ') - - - # Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}Movie uses Python identifier Movie - __Movie = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Movie'), 'Movie', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_17_httppacificbiosciences_comPacBioCollectionMetadata_xsdMovie', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 246, 2), ) - - - Movie = property(__Movie.value, __Movie.set, None, 'A movie corresponds to one acquisition for a chip, one set (look) and one strobe. ') - - - # Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}ExpirationData uses Python identifier ExpirationData - __ExpirationData = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'ExpirationData'), 'ExpirationData', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_17_httppacificbiosciences_comPacBioCollectionMetadata_xsdExpirationData', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 270, 2), ) - - - ExpirationData = property(__ExpirationData.value, __ExpirationData.set, None, 'Container for the expired consumable data. ') - - - # Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}WellSample uses Python identifier WellSample - __WellSample = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'WellSample'), 'WellSample', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_17_httppacificbiosciences_comPacBioCollectionMetadata_xsdWellSample', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 314, 2), ) - - - WellSample = property(__WellSample.value, __WellSample.set, None, 'Container for the sample related data. ') - - - # Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}Primary uses Python identifier Primary - __Primary = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Primary'), 'Primary', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_17_httppacificbiosciences_comPacBioCollectionMetadata_xsdPrimary', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 404, 2), ) - - - Primary = property(__Primary.value, __Primary.set, None, 'Container for the primary analysis related data. ') - - - # Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}Secondary uses Python identifier Secondary - __Secondary = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Secondary'), 'Secondary', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_17_httppacificbiosciences_comPacBioCollectionMetadata_xsdSecondary', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 561, 2), ) - - - Secondary = property(__Secondary.value, __Secondary.set, None, 'Container for the primary analysis related data. ') - - - # Element {http://pacificbiosciences.com/PacBioCollectionMetadata.xsd}UserDefinedFields uses Python identifier UserDefinedFields - __UserDefinedFields = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'UserDefinedFields'), 'UserDefinedFields', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_17_httppacificbiosciences_comPacBioCollectionMetadata_xsdUserDefinedFields', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 595, 2), ) - - - UserDefinedFields = property(__UserDefinedFields.value, __UserDefinedFields.set, None, 'A set of key-value pairs specified by a user via the run input mechanism. Note that uniqueness of keys is not enforced here and so may contain duplicate keys. ') - - - # Attribute Name inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Description inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Tags inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Format inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ResourceId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Version inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute CreatedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ModifiedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute UniqueId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType - - # Attribute MetaType inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType - - # Attribute TimeStampedName inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}StrictEntityType - - # Attribute Context uses Python identifier Context - __Context = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'Context'), 'Context', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_17_Context', pyxb.binding.datatypes.string) - __Context._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 182, 10) - __Context._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 182, 10) - - Context = property(__Context.value, __Context.set, None, 'Replace with TimeStampedName') - - - # Attribute Status uses Python identifier Status - __Status = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'Status'), 'Status', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_17_Status', _ImportedBinding__pbbase.SupportedAcquisitionStates) - __Status._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 187, 10) - __Status._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 187, 10) - - Status = property(__Status.value, __Status.set, None, None) - - - # Attribute InstrumentId uses Python identifier InstrumentId - __InstrumentId = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'InstrumentId'), 'InstrumentId', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_17_InstrumentId', pyxb.binding.datatypes.string) - __InstrumentId._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 188, 10) - __InstrumentId._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 188, 10) - - InstrumentId = property(__InstrumentId.value, __InstrumentId.set, None, 'World unique id assigned by PacBio. ') - - - # Attribute InstrumentName uses Python identifier InstrumentName - __InstrumentName = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'InstrumentName'), 'InstrumentName', '__httppacificbiosciences_comPacBioCollectionMetadata_xsd_CTD_ANON_17_InstrumentName', pyxb.binding.datatypes.string) - __InstrumentName._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 193, 10) - __InstrumentName._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 193, 10) - - InstrumentName = property(__InstrumentName.value, __InstrumentName.set, None, 'Friendly name assigned by customer') - - _ElementMap.update({ - __MultiJobId.name() : __MultiJobId, - __ConsensusReadSetRef.name() : __ConsensusReadSetRef, - __InstCtrlVer.name() : __InstCtrlVer, - __SigProcVer.name() : __SigProcVer, - __Automation.name() : __Automation, - __CollectionNumber.name() : __CollectionNumber, - __CellIndex.name() : __CellIndex, - __SetNumber.name() : __SetNumber, - __CellPac.name() : __CellPac, - __ControlKit.name() : __ControlKit, - __TemplatePrepKit.name() : __TemplatePrepKit, - __BindingKit.name() : __BindingKit, - __SequencingKitPlate.name() : __SequencingKitPlate, - __WashKitPlate.name() : __WashKitPlate, - __PPAConfig.name() : __PPAConfig, - __ComponentVersions.name() : __ComponentVersions, - __RunDetails.name() : __RunDetails, - __Movie.name() : __Movie, - __ExpirationData.name() : __ExpirationData, - __WellSample.name() : __WellSample, - __Primary.name() : __Primary, - __Secondary.name() : __Secondary, - __UserDefinedFields.name() : __UserDefinedFields - }) - _AttributeMap.update({ - __Context.name() : __Context, - __Status.name() : __Status, - __InstrumentId.name() : __InstrumentId, - __InstrumentName.name() : __InstrumentName - }) -_module_typeBindings.CTD_ANON_17 = CTD_ANON_17 - - -PacBioCollectionMetadata = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'PacBioCollectionMetadata'), CTD_ANON, documentation='Root element of a standalone CollectionMetadata file.', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 10, 2)) -Namespace.addCategoryObject('elementBinding', PacBioCollectionMetadata.name().localName(), PacBioCollectionMetadata) - -Collections = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Collections'), CTD_ANON_, documentation='A set of acquisition definitions', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 20, 2)) -Namespace.addCategoryObject('elementBinding', Collections.name().localName(), Collections) - -RunDetails = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'RunDetails'), CTD_ANON_3, documentation='Information related to an instrument run. A run can contain multiple chips, wells, and movies. ', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 202, 2)) -Namespace.addCategoryObject('elementBinding', RunDetails.name().localName(), RunDetails) - -Movie = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Movie'), CTD_ANON_4, documentation='A movie corresponds to one acquisition for a chip, one set (look) and one strobe. ', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 246, 2)) -Namespace.addCategoryObject('elementBinding', Movie.name().localName(), Movie) - -ExpirationData = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ExpirationData'), CTD_ANON_5, documentation='Container for the expired consumable data. ', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 270, 2)) -Namespace.addCategoryObject('elementBinding', ExpirationData.name().localName(), ExpirationData) - -Primary = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Primary'), CTD_ANON_6, documentation='Container for the primary analysis related data. ', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 404, 2)) -Namespace.addCategoryObject('elementBinding', Primary.name().localName(), Primary) - -Secondary = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Secondary'), CTD_ANON_12, documentation='Container for the primary analysis related data. ', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 561, 2)) -Namespace.addCategoryObject('elementBinding', Secondary.name().localName(), Secondary) - -UserDefinedFields = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'UserDefinedFields'), _ImportedBinding__pbbase.UserDefinedFieldsType, documentation='A set of key-value pairs specified by a user via the run input mechanism. Note that uniqueness of keys is not enforced here and so may contain duplicate keys. ', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 595, 2)) -Namespace.addCategoryObject('elementBinding', UserDefinedFields.name().localName(), UserDefinedFields) - -KeyValue = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'KeyValue'), CTD_ANON_14, documentation='One custom, possibly non-unique, key-value pair. ', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 600, 2)) -Namespace.addCategoryObject('elementBinding', KeyValue.name().localName(), KeyValue) - -WellSample = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'WellSample'), CTD_ANON_16, documentation='Container for the sample related data. ', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 314, 2)) -Namespace.addCategoryObject('elementBinding', WellSample.name().localName(), WellSample) - -CollectionMetadata = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'CollectionMetadata'), CTD_ANON_17, documentation='Root-level element for the metadata. The purpose of which is to contain pertinent instrument information related to the conditions present during a movie acquisition. It also serves to provide key pieces of information for integration with primary and secondary analysis. This file is associated with 1 movie. ', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 30, 2)) -Namespace.addCategoryObject('elementBinding', CollectionMetadata.name().localName(), CollectionMetadata) - - - -CTD_ANON._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'CollectionMetadata'), CTD_ANON_17, scope=CTD_ANON, documentation='Root-level element for the metadata. The purpose of which is to contain pertinent instrument information related to the conditions present during a movie acquisition. It also serves to provide key pieces of information for integration with primary and secondary analysis. This file is associated with 1 movie. ', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 30, 2))) - -def _BuildAutomaton (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton - del _BuildAutomaton - import pyxb.utils.fac as fac - - counters = set() - states = [] - final_update = set() - symbol = pyxb.binding.content.ElementUse(CTD_ANON._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'CollectionMetadata')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 16, 8)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - transitions = [] - st_0._set_transitionSet(transitions) - return fac.Automaton(states, counters, False, containing_state=None) -CTD_ANON._Automaton = _BuildAutomaton() - - - - -CTD_ANON_._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'CollectionMetadata'), CTD_ANON_17, scope=CTD_ANON_, documentation='Root-level element for the metadata. The purpose of which is to contain pertinent instrument information related to the conditions present during a movie acquisition. It also serves to provide key pieces of information for integration with primary and secondary analysis. This file is associated with 1 movie. ', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 30, 2))) - -def _BuildAutomaton_ (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_ - del _BuildAutomaton_ - import pyxb.utils.fac as fac - - counters = set() - states = [] - final_update = set() - symbol = pyxb.binding.content.ElementUse(CTD_ANON_._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'CollectionMetadata')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 26, 8)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - transitions = [] - transitions.append(fac.Transition(st_0, [ - ])) - st_0._set_transitionSet(transitions) - return fac.Automaton(states, counters, False, containing_state=None) -CTD_ANON_._Automaton = _BuildAutomaton_() - - - - -CTD_ANON_2._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'VersionInfo'), _ImportedBinding__pbbase.BaseEntityType, scope=CTD_ANON_2, documentation='Each component should list its name and version attribute', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 173, 18))) - -def _BuildAutomaton_2 (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_2 - del _BuildAutomaton_2 - import pyxb.utils.fac as fac - - counters = set() - states = [] - final_update = set() - symbol = pyxb.binding.content.ElementUse(CTD_ANON_2._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'VersionInfo')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 173, 18)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - transitions = [] - transitions.append(fac.Transition(st_0, [ - ])) - st_0._set_transitionSet(transitions) - return fac.Automaton(states, counters, False, containing_state=None) -CTD_ANON_2._Automaton = _BuildAutomaton_2() - - - - -CTD_ANON_3._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'TimeStampedName'), pyxb.binding.datatypes.string, scope=CTD_ANON_3, documentation='A unique identifier for this run. Format is r[sid]_[iname]_[ts]. Where [id] is a system generated id and [iname] is the instrument name and [ts] is a timestamp YYMMDD Example: r000123_00117_100713 ', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 208, 8))) - -CTD_ANON_3._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Name'), pyxb.binding.datatypes.string, scope=CTD_ANON_3, documentation='Assigned name for a run, which consists of multiple wells. There is no constraint on the uniqueness of this data. ', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 213, 8))) - -CTD_ANON_3._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'CreatedBy'), pyxb.binding.datatypes.string, scope=CTD_ANON_3, documentation='Who created the run. ', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 218, 8))) - -CTD_ANON_3._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'WhenCreated'), pyxb.binding.datatypes.dateTime, scope=CTD_ANON_3, documentation='Date and time of when the overall run was created in the system. ', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 223, 8))) - -CTD_ANON_3._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'StartedBy'), pyxb.binding.datatypes.string, scope=CTD_ANON_3, documentation='Who started the run. Could be different from who created it. ', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 228, 8))) - -CTD_ANON_3._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'WhenStarted'), pyxb.binding.datatypes.dateTime, scope=CTD_ANON_3, documentation='Date and time of when the overall run was started. ', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 233, 8))) - -CTD_ANON_3._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'WhenCompleted'), pyxb.binding.datatypes.dateTime, scope=CTD_ANON_3, documentation='Date and time of when the overall run was completed. ', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 238, 8))) - -def _BuildAutomaton_3 (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_3 - del _BuildAutomaton_3 - import pyxb.utils.fac as fac - - counters = set() - cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 213, 8)) - counters.add(cc_0) - cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 218, 8)) - counters.add(cc_1) - cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 223, 8)) - counters.add(cc_2) - cc_3 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 228, 8)) - counters.add(cc_3) - cc_4 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 233, 8)) - counters.add(cc_4) - cc_5 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 238, 8)) - counters.add(cc_5) - states = [] - final_update = set() - symbol = pyxb.binding.content.ElementUse(CTD_ANON_3._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'TimeStampedName')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 208, 8)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_0, False)) - symbol = pyxb.binding.content.ElementUse(CTD_ANON_3._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Name')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 213, 8)) - st_1 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_1) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_1, False)) - symbol = pyxb.binding.content.ElementUse(CTD_ANON_3._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'CreatedBy')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 218, 8)) - st_2 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_2) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_2, False)) - symbol = pyxb.binding.content.ElementUse(CTD_ANON_3._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'WhenCreated')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 223, 8)) - st_3 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_3) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_3, False)) - symbol = pyxb.binding.content.ElementUse(CTD_ANON_3._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'StartedBy')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 228, 8)) - st_4 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_4) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_4, False)) - symbol = pyxb.binding.content.ElementUse(CTD_ANON_3._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'WhenStarted')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 233, 8)) - st_5 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_5) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_5, False)) - symbol = pyxb.binding.content.ElementUse(CTD_ANON_3._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'WhenCompleted')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 238, 8)) - st_6 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_6) - transitions = [] - transitions.append(fac.Transition(st_1, [ - ])) - transitions.append(fac.Transition(st_2, [ - ])) - transitions.append(fac.Transition(st_3, [ - ])) - transitions.append(fac.Transition(st_4, [ - ])) - transitions.append(fac.Transition(st_5, [ - ])) - transitions.append(fac.Transition(st_6, [ - ])) - st_0._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_1, [ - fac.UpdateInstruction(cc_0, True) ])) - transitions.append(fac.Transition(st_2, [ - fac.UpdateInstruction(cc_0, False) ])) - transitions.append(fac.Transition(st_3, [ - fac.UpdateInstruction(cc_0, False) ])) - transitions.append(fac.Transition(st_4, [ - fac.UpdateInstruction(cc_0, False) ])) - transitions.append(fac.Transition(st_5, [ - fac.UpdateInstruction(cc_0, False) ])) - transitions.append(fac.Transition(st_6, [ - fac.UpdateInstruction(cc_0, False) ])) - st_1._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_2, [ - fac.UpdateInstruction(cc_1, True) ])) - transitions.append(fac.Transition(st_3, [ - fac.UpdateInstruction(cc_1, False) ])) - transitions.append(fac.Transition(st_4, [ - fac.UpdateInstruction(cc_1, False) ])) - transitions.append(fac.Transition(st_5, [ - fac.UpdateInstruction(cc_1, False) ])) - transitions.append(fac.Transition(st_6, [ - fac.UpdateInstruction(cc_1, False) ])) - st_2._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_3, [ - fac.UpdateInstruction(cc_2, True) ])) - transitions.append(fac.Transition(st_4, [ - fac.UpdateInstruction(cc_2, False) ])) - transitions.append(fac.Transition(st_5, [ - fac.UpdateInstruction(cc_2, False) ])) - transitions.append(fac.Transition(st_6, [ - fac.UpdateInstruction(cc_2, False) ])) - st_3._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_4, [ - fac.UpdateInstruction(cc_3, True) ])) - transitions.append(fac.Transition(st_5, [ - fac.UpdateInstruction(cc_3, False) ])) - transitions.append(fac.Transition(st_6, [ - fac.UpdateInstruction(cc_3, False) ])) - st_4._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_5, [ - fac.UpdateInstruction(cc_4, True) ])) - transitions.append(fac.Transition(st_6, [ - fac.UpdateInstruction(cc_4, False) ])) - st_5._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_6, [ - fac.UpdateInstruction(cc_5, True) ])) - st_6._set_transitionSet(transitions) - return fac.Automaton(states, counters, False, containing_state=None) -CTD_ANON_3._Automaton = _BuildAutomaton_3() - - - - -CTD_ANON_4._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'WhenStarted'), pyxb.binding.datatypes.dateTime, scope=CTD_ANON_4, documentation='Date and time of when this movie acquisition started. ', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 252, 8))) - -CTD_ANON_4._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'DurationInSec'), pyxb.binding.datatypes.int, scope=CTD_ANON_4, documentation='The actual length of the movie acquisition (in seconds), irrespective of the movie duration specified by an automation parameter. ', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 257, 8), unicode_default='0')) - -CTD_ANON_4._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Number'), pyxb.binding.datatypes.int, scope=CTD_ANON_4, documentation="The number of this movie within the set (i.e., look). This is unique when combined with the 'SetNumber'. ", location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 262, 8), unicode_default='0')) - -def _BuildAutomaton_4 (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_4 - del _BuildAutomaton_4 - import pyxb.utils.fac as fac - - counters = set() - states = [] - final_update = None - symbol = pyxb.binding.content.ElementUse(CTD_ANON_4._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'WhenStarted')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 252, 8)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - final_update = None - symbol = pyxb.binding.content.ElementUse(CTD_ANON_4._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DurationInSec')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 257, 8)) - st_1 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_1) - final_update = set() - symbol = pyxb.binding.content.ElementUse(CTD_ANON_4._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Number')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 262, 8)) - st_2 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_2) - transitions = [] - transitions.append(fac.Transition(st_1, [ - ])) - st_0._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_2, [ - ])) - st_1._set_transitionSet(transitions) - transitions = [] - st_2._set_transitionSet(transitions) - return fac.Automaton(states, counters, False, containing_state=None) -CTD_ANON_4._Automaton = _BuildAutomaton_4() - - - - -CTD_ANON_5._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'TemplatePrepKitPastExpiration'), pyxb.binding.datatypes.int, scope=CTD_ANON_5, documentation='Number of days past expiration the template prep kit was (if at all). ', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 276, 8))) - -CTD_ANON_5._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'BindingKitPastExpiration'), pyxb.binding.datatypes.int, scope=CTD_ANON_5, documentation='Number of days past expiration the binding kit was (if at all). ', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 281, 8))) - -CTD_ANON_5._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'CellPacPastExpiration'), pyxb.binding.datatypes.int, scope=CTD_ANON_5, documentation='Number of days past expiration the cell pac was (if at all). ', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 286, 8))) - -CTD_ANON_5._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'SequencingKitPastExpiration'), pyxb.binding.datatypes.int, scope=CTD_ANON_5, documentation='Number of days past expiration the reagent kit was (if at all). ', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 296, 8))) - -CTD_ANON_5._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'SequencingTube0PastExpiration'), pyxb.binding.datatypes.int, scope=CTD_ANON_5, documentation='Number of days past expiration the reagent tube 0 was (if at all). ', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 301, 8))) - -CTD_ANON_5._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'SequencingTube1PastExpiration'), pyxb.binding.datatypes.int, scope=CTD_ANON_5, documentation='Number of days past expiration the reagent tube 1 was (if at all). ', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 306, 8))) - -def _BuildAutomaton_5 (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_5 - del _BuildAutomaton_5 - import pyxb.utils.fac as fac - - counters = set() - states = [] - final_update = None - symbol = pyxb.binding.content.ElementUse(CTD_ANON_5._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'TemplatePrepKitPastExpiration')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 276, 8)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - final_update = None - symbol = pyxb.binding.content.ElementUse(CTD_ANON_5._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'BindingKitPastExpiration')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 281, 8)) - st_1 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_1) - final_update = None - symbol = pyxb.binding.content.ElementUse(CTD_ANON_5._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'CellPacPastExpiration')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 286, 8)) - st_2 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_2) - final_update = None - symbol = pyxb.binding.content.ElementUse(CTD_ANON_5._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'CellPacPastExpiration')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 291, 8)) - st_3 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_3) - final_update = None - symbol = pyxb.binding.content.ElementUse(CTD_ANON_5._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'SequencingKitPastExpiration')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 296, 8)) - st_4 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_4) - final_update = None - symbol = pyxb.binding.content.ElementUse(CTD_ANON_5._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'SequencingTube0PastExpiration')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 301, 8)) - st_5 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_5) - final_update = set() - symbol = pyxb.binding.content.ElementUse(CTD_ANON_5._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'SequencingTube1PastExpiration')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 306, 8)) - st_6 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_6) - transitions = [] - transitions.append(fac.Transition(st_1, [ - ])) - st_0._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_2, [ - ])) - st_1._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_3, [ - ])) - st_2._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_4, [ - ])) - st_3._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_5, [ - ])) - st_4._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_6, [ - ])) - st_5._set_transitionSet(transitions) - transitions = [] - st_6._set_transitionSet(transitions) - return fac.Automaton(states, counters, False, containing_state=None) -CTD_ANON_5._Automaton = _BuildAutomaton_5() - - - - -CTD_ANON_6._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'SampleTrace'), CTD_ANON_7, scope=CTD_ANON_6, documentation='Tag to indicate that the trace file will be sampled. ', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 410, 8))) - -CTD_ANON_6._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'AutomationName'), pyxb.binding.datatypes.string, scope=CTD_ANON_6, documentation='Name of primary analysis protocol. ', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 429, 8))) - -CTD_ANON_6._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ConfigFileName'), pyxb.binding.datatypes.string, scope=CTD_ANON_6, documentation='Name of primary analysis config file. ', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 434, 8))) - -CTD_ANON_6._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'SequencingCondition'), pyxb.binding.datatypes.string, scope=CTD_ANON_6, documentation='A sequencing condition tag to be used by primary analysis, e.g., to select basecaller calibration or training parameters. ', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 439, 8))) - -CTD_ANON_6._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'CCSOptions'), CTD_ANON_8, scope=CTD_ANON_6, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 444, 8))) - -CTD_ANON_6._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'OutputOptions'), CTD_ANON_9, scope=CTD_ANON_6, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 455, 8))) - -def _BuildAutomaton_6 (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_6 - del _BuildAutomaton_6 - import pyxb.utils.fac as fac - - counters = set() - cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 410, 8)) - counters.add(cc_0) - cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 434, 8)) - counters.add(cc_1) - cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 444, 8)) - counters.add(cc_2) - states = [] - final_update = None - symbol = pyxb.binding.content.ElementUse(CTD_ANON_6._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'SampleTrace')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 410, 8)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - final_update = None - symbol = pyxb.binding.content.ElementUse(CTD_ANON_6._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'AutomationName')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 429, 8)) - st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_1) - final_update = None - symbol = pyxb.binding.content.ElementUse(CTD_ANON_6._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'ConfigFileName')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 434, 8)) - st_2 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_2) - final_update = None - symbol = pyxb.binding.content.ElementUse(CTD_ANON_6._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'SequencingCondition')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 439, 8)) - st_3 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_3) - final_update = None - symbol = pyxb.binding.content.ElementUse(CTD_ANON_6._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'CCSOptions')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 444, 8)) - st_4 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_4) - final_update = set() - symbol = pyxb.binding.content.ElementUse(CTD_ANON_6._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'OutputOptions')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 455, 8)) - st_5 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_5) - transitions = [] - transitions.append(fac.Transition(st_0, [ - fac.UpdateInstruction(cc_0, True) ])) - transitions.append(fac.Transition(st_1, [ - fac.UpdateInstruction(cc_0, False) ])) - st_0._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_2, [ - ])) - transitions.append(fac.Transition(st_3, [ - ])) - st_1._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_2, [ - fac.UpdateInstruction(cc_1, True) ])) - transitions.append(fac.Transition(st_3, [ - fac.UpdateInstruction(cc_1, False) ])) - st_2._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_4, [ - ])) - transitions.append(fac.Transition(st_5, [ - ])) - st_3._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_4, [ - fac.UpdateInstruction(cc_2, True) ])) - transitions.append(fac.Transition(st_5, [ - fac.UpdateInstruction(cc_2, False) ])) - st_4._set_transitionSet(transitions) - transitions = [] - st_5._set_transitionSet(transitions) - return fac.Automaton(states, counters, False, containing_state=None) -CTD_ANON_6._Automaton = _BuildAutomaton_6() - - - - -CTD_ANON_7._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'TraceSamplingFactor'), pyxb.binding.datatypes.float, scope=CTD_ANON_7, documentation='Percentage of traces to sample. ', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 416, 14))) - -CTD_ANON_7._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'FullPulseFile'), pyxb.binding.datatypes.boolean, scope=CTD_ANON_7, documentation='Whether full or sampled pulse file is transferred if requested. ', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 421, 14))) - -def _BuildAutomaton_7 (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_7 - del _BuildAutomaton_7 - import pyxb.utils.fac as fac - - counters = set() - states = [] - final_update = None - symbol = pyxb.binding.content.ElementUse(CTD_ANON_7._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'TraceSamplingFactor')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 416, 14)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - final_update = set() - symbol = pyxb.binding.content.ElementUse(CTD_ANON_7._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'FullPulseFile')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 421, 14)) - st_1 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_1) - transitions = [] - transitions.append(fac.Transition(st_1, [ - ])) - st_0._set_transitionSet(transitions) - transitions = [] - st_1._set_transitionSet(transitions) - return fac.Automaton(states, counters, False, containing_state=None) -CTD_ANON_7._Automaton = _BuildAutomaton_7() - - - - -CTD_ANON_8._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ExecutionMode'), _ImportedBinding__pbbase.SupportedCcsModes, scope=CTD_ANON_8, documentation='If set to OnInstrument, turns on CCS as part of Post-Primary Analysis and transfers the resulting ConsensusReadSet off-instrument. Not supported on Sequel I instruments.', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 447, 14), unicode_default='None')) - -def _BuildAutomaton_8 (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_8 - del _BuildAutomaton_8 - import pyxb.utils.fac as fac - - counters = set() - states = [] - final_update = set() - symbol = pyxb.binding.content.ElementUse(CTD_ANON_8._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'ExecutionMode')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 447, 14)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - transitions = [] - st_0._set_transitionSet(transitions) - return fac.Automaton(states, counters, False, containing_state=None) -CTD_ANON_8._Automaton = _BuildAutomaton_8() - - - - -CTD_ANON_9._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ResultsFolder'), pyxb.binding.datatypes.string, scope=CTD_ANON_9, documentation="NOTE: not for customers. A sub-folder under the CollectionPath created by Primary Analysis. This is a field that will be updated by the primary analysis pipeline. The default (as created by homer) should be set to 'Reports_Sms' for now. Consumers of the data should be aware that they will find collection metadata (and trace files if acquisition is so-configured) at the CollectionPathUri, and all primary analysis results in the sub-folder PrimaryResultsFolder. ", location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 458, 14))) - -CTD_ANON_9._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'CollectionPathUri'), pyxb.binding.datatypes.anyURI, scope=CTD_ANON_9, documentation='User-specified location of where the results should be copied after an analysis has been completed. ', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 463, 14))) - -CTD_ANON_9._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'CopyFiles'), CTD_ANON_10, scope=CTD_ANON_9, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 468, 14))) - -CTD_ANON_9._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Readout'), STD_ANON_, scope=CTD_ANON_9, documentation='BazIO Readout option; valid values are Bases (default) and Pulses', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 479, 14), unicode_default='Bases')) - -CTD_ANON_9._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'MetricsVerbosity'), STD_ANON_2, scope=CTD_ANON_9, documentation='BazIO MetricsVerbosity option; valid values are Minimal (default), High, and None', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 491, 14), unicode_default='Minimal')) - -CTD_ANON_9._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'TransferResource'), CTD_ANON_11, scope=CTD_ANON_9, documentation='Transfer Resource (optional for now, but will be made required when ICS implements this)', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 503, 14))) - -def _BuildAutomaton_9 (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_9 - del _BuildAutomaton_9 - import pyxb.utils.fac as fac - - counters = set() - cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 503, 14)) - counters.add(cc_0) - states = [] - final_update = None - symbol = pyxb.binding.content.ElementUse(CTD_ANON_9._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'ResultsFolder')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 458, 14)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - final_update = None - symbol = pyxb.binding.content.ElementUse(CTD_ANON_9._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'CollectionPathUri')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 463, 14)) - st_1 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_1) - final_update = None - symbol = pyxb.binding.content.ElementUse(CTD_ANON_9._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'CopyFiles')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 468, 14)) - st_2 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_2) - final_update = None - symbol = pyxb.binding.content.ElementUse(CTD_ANON_9._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Readout')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 479, 14)) - st_3 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_3) - final_update = set() - symbol = pyxb.binding.content.ElementUse(CTD_ANON_9._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'MetricsVerbosity')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 491, 14)) - st_4 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_4) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_0, False)) - symbol = pyxb.binding.content.ElementUse(CTD_ANON_9._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'TransferResource')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 503, 14)) - st_5 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_5) - transitions = [] - transitions.append(fac.Transition(st_1, [ - ])) - st_0._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_2, [ - ])) - st_1._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_3, [ - ])) - st_2._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_4, [ - ])) - st_3._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_5, [ - ])) - st_4._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_5, [ - fac.UpdateInstruction(cc_0, True) ])) - st_5._set_transitionSet(transitions) - return fac.Automaton(states, counters, False, containing_state=None) -CTD_ANON_9._Automaton = _BuildAutomaton_9() - - - - -CTD_ANON_10._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'CollectionFileCopy'), PapOutputFile, scope=CTD_ANON_10, documentation='Defines the set of files to be copied to the CollectionPathUri. 1 or more. ', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 471, 20))) - -def _BuildAutomaton_10 (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_10 - del _BuildAutomaton_10 - import pyxb.utils.fac as fac - - counters = set() - cc_0 = fac.CounterCondition(min=0, max=None, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 471, 20)) - counters.add(cc_0) - states = [] - final_update = set() - final_update.add(fac.UpdateInstruction(cc_0, False)) - symbol = pyxb.binding.content.ElementUse(CTD_ANON_10._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'CollectionFileCopy')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 471, 20)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - transitions = [] - transitions.append(fac.Transition(st_0, [ - fac.UpdateInstruction(cc_0, True) ])) - st_0._set_transitionSet(transitions) - return fac.Automaton(states, counters, True, containing_state=None) -CTD_ANON_10._Automaton = _BuildAutomaton_10() - - - - -CTD_ANON_11._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Id'), STD_ANON_3, scope=CTD_ANON_11, documentation='Id of the Transfer Resource that is unique to the Scheme Type. A tuple of (TransferScheme, Id) will be globally unique', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 509, 20))) - -CTD_ANON_11._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'TransferScheme'), STD_ANON_4, scope=CTD_ANON_11, documentation='Transfer Scheme type (this should be an enum Scheme of rsync, srs or nfs)', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 519, 20))) - -CTD_ANON_11._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Name'), pyxb.binding.datatypes.string, scope=CTD_ANON_11, documentation='Display Name of the Transfer Resource', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 531, 20))) - -CTD_ANON_11._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Description'), pyxb.binding.datatypes.string, scope=CTD_ANON_11, documentation='Description of the Transfer Resource', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 536, 20))) - -CTD_ANON_11._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'DestPath'), pyxb.binding.datatypes.string, scope=CTD_ANON_11, documentation='Remote Root Destination Path of the Transfer Resource', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 541, 20))) - -CTD_ANON_11._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'RelativePath'), pyxb.binding.datatypes.string, scope=CTD_ANON_11, documentation='Remote Relative Path of the Transfer Resource', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 546, 20))) - -def _BuildAutomaton_11 (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_11 - del _BuildAutomaton_11 - import pyxb.utils.fac as fac - - counters = set() - cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 546, 20)) - counters.add(cc_0) - states = [] - final_update = None - symbol = pyxb.binding.content.ElementUse(CTD_ANON_11._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Id')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 509, 20)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - final_update = None - symbol = pyxb.binding.content.ElementUse(CTD_ANON_11._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'TransferScheme')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 519, 20)) - st_1 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_1) - final_update = None - symbol = pyxb.binding.content.ElementUse(CTD_ANON_11._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Name')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 531, 20)) - st_2 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_2) - final_update = None - symbol = pyxb.binding.content.ElementUse(CTD_ANON_11._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Description')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 536, 20)) - st_3 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_3) - final_update = set() - symbol = pyxb.binding.content.ElementUse(CTD_ANON_11._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DestPath')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 541, 20)) - st_4 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_4) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_0, False)) - symbol = pyxb.binding.content.ElementUse(CTD_ANON_11._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'RelativePath')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 546, 20)) - st_5 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_5) - transitions = [] - transitions.append(fac.Transition(st_1, [ - ])) - st_0._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_2, [ - ])) - st_1._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_3, [ - ])) - st_2._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_4, [ - ])) - st_3._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_5, [ - ])) - st_4._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_5, [ - fac.UpdateInstruction(cc_0, True) ])) - st_5._set_transitionSet(transitions) - return fac.Automaton(states, counters, False, containing_state=None) -CTD_ANON_11._Automaton = _BuildAutomaton_11() - - - - -CTD_ANON_12._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'AutomationName'), pyxb.binding.datatypes.string, scope=CTD_ANON_12, documentation='The secondary analysis protocol name specified in the sample sheet. Ignored by secondary. ', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 567, 8))) - -CTD_ANON_12._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'AutomationParameters'), CTD_ANON_13, scope=CTD_ANON_12, documentation='The parameters for secondary analysis specified in the sample sheet. Ignored by secondary. ', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 572, 8))) - -CTD_ANON_12._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'CellCountInJob'), pyxb.binding.datatypes.int, scope=CTD_ANON_12, documentation="The number of cells in this secondary analysis job, identified by the secondary analysis parameter 'JobName'. Supports automated secondary analysis. ", location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 586, 8))) - -def _BuildAutomaton_12 (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_12 - del _BuildAutomaton_12 - import pyxb.utils.fac as fac - - counters = set() - cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 572, 8)) - counters.add(cc_0) - states = [] - final_update = None - symbol = pyxb.binding.content.ElementUse(CTD_ANON_12._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'AutomationName')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 567, 8)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - final_update = None - symbol = pyxb.binding.content.ElementUse(CTD_ANON_12._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'AutomationParameters')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 572, 8)) - st_1 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_1) - final_update = set() - symbol = pyxb.binding.content.ElementUse(CTD_ANON_12._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'CellCountInJob')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 586, 8)) - st_2 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_2) - transitions = [] - transitions.append(fac.Transition(st_1, [ - ])) - transitions.append(fac.Transition(st_2, [ - ])) - st_0._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_1, [ - fac.UpdateInstruction(cc_0, True) ])) - transitions.append(fac.Transition(st_2, [ - fac.UpdateInstruction(cc_0, False) ])) - st_1._set_transitionSet(transitions) - transitions = [] - st_2._set_transitionSet(transitions) - return fac.Automaton(states, counters, False, containing_state=None) -CTD_ANON_12._Automaton = _BuildAutomaton_12() - - - - -CTD_ANON_13._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'AutomationParameter'), _ImportedBinding__pbbase.DataEntityType, scope=CTD_ANON_13, documentation='One or more secondary analysis parameters, such as JobName, Workflow, etc..', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 578, 14))) - -def _BuildAutomaton_13 (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_13 - del _BuildAutomaton_13 - import pyxb.utils.fac as fac - - counters = set() - cc_0 = fac.CounterCondition(min=0, max=None, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 578, 14)) - counters.add(cc_0) - states = [] - final_update = set() - final_update.add(fac.UpdateInstruction(cc_0, False)) - symbol = pyxb.binding.content.ElementUse(CTD_ANON_13._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'AutomationParameter')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 578, 14)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - transitions = [] - transitions.append(fac.Transition(st_0, [ - fac.UpdateInstruction(cc_0, True) ])) - st_0._set_transitionSet(transitions) - return fac.Automaton(states, counters, True, containing_state=None) -CTD_ANON_13._Automaton = _BuildAutomaton_13() - - - - -def _BuildAutomaton_14 (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_14 - del _BuildAutomaton_14 - import pyxb.utils.fac as fac - - counters = set() - cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - counters.add(cc_0) - states = [] - final_update = set() - final_update.add(fac.UpdateInstruction(cc_0, False)) - symbol = pyxb.binding.content.ElementUse(CTD_ANON_15._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - transitions = [] - transitions.append(fac.Transition(st_0, [ - fac.UpdateInstruction(cc_0, True) ])) - st_0._set_transitionSet(transitions) - return fac.Automaton(states, counters, True, containing_state=None) -CTD_ANON_15._Automaton = _BuildAutomaton_14() - - - - -CTD_ANON_16._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'WellName'), pyxb.binding.datatypes.string, scope=CTD_ANON_16, documentation='Identifies which well this sample came from (e.g., coordinate on a plate). ', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 322, 12))) - -CTD_ANON_16._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Concentration'), pyxb.binding.datatypes.double, scope=CTD_ANON_16, documentation='Sample input concentration. ', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 327, 12))) - -CTD_ANON_16._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'OnPlateLoadingConcentration'), pyxb.binding.datatypes.double, scope=CTD_ANON_16, documentation='On plate loading concentration. ', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 332, 12))) - -CTD_ANON_16._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'InsertSize'), pyxb.binding.datatypes.int, scope=CTD_ANON_16, documentation='Length of the sheared template, e.g. 500, 2000, 30000', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 337, 12))) - -CTD_ANON_16._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'IsoSeq'), pyxb.binding.datatypes.boolean, scope=CTD_ANON_16, documentation='Whether or not this is an Iso-Seq experiment (optional; defaults to false).', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 342, 12))) - -CTD_ANON_16._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'IsCCS'), pyxb.binding.datatypes.boolean, scope=CTD_ANON_16, documentation='Whether or not the read type is CCS, true, or CLR, false.', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 347, 12))) - -CTD_ANON_16._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'LoadingTarget'), pyxb.binding.datatypes.double, scope=CTD_ANON_16, documentation='Dynamic Loading Target', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 352, 12))) - -CTD_ANON_16._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'MaxLoadingTime'), pyxb.binding.datatypes.double, scope=CTD_ANON_16, documentation='Dynamic Loading Maximum Loading Time', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 357, 12))) - -CTD_ANON_16._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'SampleReuseEnabled'), pyxb.binding.datatypes.boolean, scope=CTD_ANON_16, documentation='Whether or not complex reuse is enabled for this well. ', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 362, 12))) - -CTD_ANON_16._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'StageHotstartEnabled'), pyxb.binding.datatypes.boolean, scope=CTD_ANON_16, documentation='Whether or not hotstart at the stage is enabled for this well. ', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 367, 12))) - -CTD_ANON_16._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'SizeSelectionEnabled'), pyxb.binding.datatypes.boolean, scope=CTD_ANON_16, documentation='Whether or not size selection is enabled for this well. ', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 372, 12))) - -CTD_ANON_16._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'UseCount'), pyxb.binding.datatypes.int, scope=CTD_ANON_16, documentation='Count of usages for this batch of complex. ', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 377, 12))) - -CTD_ANON_16._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'DNAControlComplex'), pyxb.binding.datatypes.string, scope=CTD_ANON_16, documentation='Indicating what kind (if any) control was used. ', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 382, 12))) - -CTD_ANON_16._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'SampleSetupId'), pyxb.binding.datatypes.string, scope=CTD_ANON_16, documentation='Optional pointer to a Sample Setup record in SMRT Link', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 387, 12))) - -CTD_ANON_16._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'BioSamplesCsv'), _ImportedBinding__pbbase.InputOutputDataType, scope=CTD_ANON_16, documentation='The name of the biosamples CSV.', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 393, 12))) - -CTD_ANON_16._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(_Namespace_pbsample, 'BioSamples'), _ImportedBinding__pbsample.CTD_ANON_2, scope=CTD_ANON_16, documentation='List of biological samples.', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioSampleInfo.xsd', 126, 2))) - -def _BuildAutomaton_15 (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_15 - del _BuildAutomaton_15 - import pyxb.utils.fac as fac - - counters = set() - cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - counters.add(cc_0) - cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 332, 12)) - counters.add(cc_1) - cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 342, 12)) - counters.add(cc_2) - cc_3 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 347, 12)) - counters.add(cc_3) - cc_4 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 352, 12)) - counters.add(cc_4) - cc_5 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 357, 12)) - counters.add(cc_5) - cc_6 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 382, 12)) - counters.add(cc_6) - cc_7 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 387, 12)) - counters.add(cc_7) - cc_8 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 392, 12)) - counters.add(cc_8) - cc_9 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 393, 12)) - counters.add(cc_9) - states = [] - final_update = None - symbol = pyxb.binding.content.ElementUse(CTD_ANON_16._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - final_update = None - symbol = pyxb.binding.content.ElementUse(CTD_ANON_16._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'WellName')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 322, 12)) - st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_1) - final_update = None - symbol = pyxb.binding.content.ElementUse(CTD_ANON_16._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Concentration')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 327, 12)) - st_2 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_2) - final_update = None - symbol = pyxb.binding.content.ElementUse(CTD_ANON_16._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'OnPlateLoadingConcentration')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 332, 12)) - st_3 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_3) - final_update = None - symbol = pyxb.binding.content.ElementUse(CTD_ANON_16._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'InsertSize')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 337, 12)) - st_4 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_4) - final_update = None - symbol = pyxb.binding.content.ElementUse(CTD_ANON_16._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'IsoSeq')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 342, 12)) - st_5 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_5) - final_update = None - symbol = pyxb.binding.content.ElementUse(CTD_ANON_16._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'IsCCS')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 347, 12)) - st_6 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_6) - final_update = None - symbol = pyxb.binding.content.ElementUse(CTD_ANON_16._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'LoadingTarget')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 352, 12)) - st_7 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_7) - final_update = None - symbol = pyxb.binding.content.ElementUse(CTD_ANON_16._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'MaxLoadingTime')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 357, 12)) - st_8 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_8) - final_update = None - symbol = pyxb.binding.content.ElementUse(CTD_ANON_16._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'SampleReuseEnabled')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 362, 12)) - st_9 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_9) - final_update = None - symbol = pyxb.binding.content.ElementUse(CTD_ANON_16._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'StageHotstartEnabled')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 367, 12)) - st_10 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_10) - final_update = None - symbol = pyxb.binding.content.ElementUse(CTD_ANON_16._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'SizeSelectionEnabled')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 372, 12)) - st_11 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_11) - final_update = set() - symbol = pyxb.binding.content.ElementUse(CTD_ANON_16._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'UseCount')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 377, 12)) - st_12 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_12) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_6, False)) - symbol = pyxb.binding.content.ElementUse(CTD_ANON_16._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DNAControlComplex')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 382, 12)) - st_13 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_13) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_7, False)) - symbol = pyxb.binding.content.ElementUse(CTD_ANON_16._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'SampleSetupId')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 387, 12)) - st_14 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_14) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_8, False)) - symbol = pyxb.binding.content.ElementUse(CTD_ANON_16._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbsample, 'BioSamples')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 392, 12)) - st_15 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_15) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_9, False)) - symbol = pyxb.binding.content.ElementUse(CTD_ANON_16._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'BioSamplesCsv')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 393, 12)) - st_16 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_16) - transitions = [] - transitions.append(fac.Transition(st_0, [ - fac.UpdateInstruction(cc_0, True) ])) - transitions.append(fac.Transition(st_1, [ - fac.UpdateInstruction(cc_0, False) ])) - st_0._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_2, [ - ])) - st_1._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_3, [ - ])) - transitions.append(fac.Transition(st_4, [ - ])) - st_2._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_3, [ - fac.UpdateInstruction(cc_1, True) ])) - transitions.append(fac.Transition(st_4, [ - fac.UpdateInstruction(cc_1, False) ])) - st_3._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_5, [ - ])) - transitions.append(fac.Transition(st_6, [ - ])) - transitions.append(fac.Transition(st_7, [ - ])) - transitions.append(fac.Transition(st_8, [ - ])) - transitions.append(fac.Transition(st_9, [ - ])) - st_4._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_5, [ - fac.UpdateInstruction(cc_2, True) ])) - transitions.append(fac.Transition(st_6, [ - fac.UpdateInstruction(cc_2, False) ])) - transitions.append(fac.Transition(st_7, [ - fac.UpdateInstruction(cc_2, False) ])) - transitions.append(fac.Transition(st_8, [ - fac.UpdateInstruction(cc_2, False) ])) - transitions.append(fac.Transition(st_9, [ - fac.UpdateInstruction(cc_2, False) ])) - st_5._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_6, [ - fac.UpdateInstruction(cc_3, True) ])) - transitions.append(fac.Transition(st_7, [ - fac.UpdateInstruction(cc_3, False) ])) - transitions.append(fac.Transition(st_8, [ - fac.UpdateInstruction(cc_3, False) ])) - transitions.append(fac.Transition(st_9, [ - fac.UpdateInstruction(cc_3, False) ])) - st_6._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_7, [ - fac.UpdateInstruction(cc_4, True) ])) - transitions.append(fac.Transition(st_8, [ - fac.UpdateInstruction(cc_4, False) ])) - transitions.append(fac.Transition(st_9, [ - fac.UpdateInstruction(cc_4, False) ])) - st_7._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_8, [ - fac.UpdateInstruction(cc_5, True) ])) - transitions.append(fac.Transition(st_9, [ - fac.UpdateInstruction(cc_5, False) ])) - st_8._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_10, [ - ])) - st_9._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_11, [ - ])) - st_10._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_12, [ - ])) - st_11._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_13, [ - ])) - transitions.append(fac.Transition(st_14, [ - ])) - transitions.append(fac.Transition(st_15, [ - ])) - transitions.append(fac.Transition(st_16, [ - ])) - st_12._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_13, [ - fac.UpdateInstruction(cc_6, True) ])) - transitions.append(fac.Transition(st_14, [ - fac.UpdateInstruction(cc_6, False) ])) - transitions.append(fac.Transition(st_15, [ - fac.UpdateInstruction(cc_6, False) ])) - transitions.append(fac.Transition(st_16, [ - fac.UpdateInstruction(cc_6, False) ])) - st_13._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_14, [ - fac.UpdateInstruction(cc_7, True) ])) - transitions.append(fac.Transition(st_15, [ - fac.UpdateInstruction(cc_7, False) ])) - transitions.append(fac.Transition(st_16, [ - fac.UpdateInstruction(cc_7, False) ])) - st_14._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_15, [ - fac.UpdateInstruction(cc_8, True) ])) - transitions.append(fac.Transition(st_16, [ - fac.UpdateInstruction(cc_8, False) ])) - st_15._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_16, [ - fac.UpdateInstruction(cc_9, True) ])) - st_16._set_transitionSet(transitions) - return fac.Automaton(states, counters, False, containing_state=None) -CTD_ANON_16._Automaton = _BuildAutomaton_15() - - - - -CTD_ANON_17._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'MultiJobId'), pyxb.binding.datatypes.unsignedInt, scope=CTD_ANON_17, documentation='Id of the SMRT Link MultiJob that will create Jobs to process the Demuxed SubreadSets of this Collection, if it is Barcoded.', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 38, 12))) - -CTD_ANON_17._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ConsensusReadSetRef'), CTD_ANON_15, scope=CTD_ANON_17, documentation='Contains information on the CCS dataset of the Collection', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 43, 12))) - -CTD_ANON_17._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'InstCtrlVer'), pyxb.binding.datatypes.string, scope=CTD_ANON_17, documentation='Instrument control software version. ', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 65, 12))) - -CTD_ANON_17._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'SigProcVer'), pyxb.binding.datatypes.string, scope=CTD_ANON_17, documentation='Signal processing software version. ', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 70, 12))) - -CTD_ANON_17._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Automation'), _ImportedBinding__pbbase.AutomationType, scope=CTD_ANON_17, documentation='Defines the collection workflow (e.g., robotic movement, movie acquisition) for a particular cell. ', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 92, 12))) - -CTD_ANON_17._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'CollectionNumber'), pyxb.binding.datatypes.int, scope=CTD_ANON_17, documentation='Collection number for this plate well. Sample from one plate well or tube can be distributed to more than one cell. ', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 97, 12))) - -CTD_ANON_17._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'CellIndex'), pyxb.binding.datatypes.int, scope=CTD_ANON_17, documentation='The zero-based index of this particular cell within the cell tray. Likely to be in the range of [0-3]', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 102, 12))) - -CTD_ANON_17._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'SetNumber'), pyxb.binding.datatypes.unsignedShort, scope=CTD_ANON_17, documentation='Formerly known as the look number. 1 - N. Defaults to 1. 0 if the look is unknown. ', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 107, 12))) - -CTD_ANON_17._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'CellPac'), _ImportedBinding__pbbase.SupplyKitCellPack, scope=CTD_ANON_17, documentation='The SMRT cell packaging supply information. ', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 112, 12))) - -CTD_ANON_17._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ControlKit'), _ImportedBinding__pbbase.SupplyKitControl, scope=CTD_ANON_17, documentation='Defines the DNA control used for this experiment. ', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 117, 12))) - -CTD_ANON_17._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'TemplatePrepKit'), _ImportedBinding__pbbase.SupplyKitTemplate, scope=CTD_ANON_17, documentation='Defines the template (sample) prep kit used for this experiment. Can be used to get back to the primary and adapter used. ', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 122, 12))) - -CTD_ANON_17._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'BindingKit'), _ImportedBinding__pbbase.SupplyKitBinding, scope=CTD_ANON_17, documentation='The binding kit supply information. ', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 127, 12))) - -CTD_ANON_17._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'SequencingKitPlate'), _ImportedBinding__pbrk.SupplyKitSequencing, scope=CTD_ANON_17, documentation='The sequencing kit supply information. ', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 132, 12))) - -CTD_ANON_17._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'WashKitPlate'), _ImportedBinding__pbrk.SupplyKitSequencing, scope=CTD_ANON_17, documentation='The wash kit supply information. ', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 137, 12))) - -CTD_ANON_17._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'PPAConfig'), pyxb.binding.datatypes.string, scope=CTD_ANON_17, documentation='The post-primary analysis-specific information. ', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 147, 12))) - -CTD_ANON_17._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ComponentVersions'), CTD_ANON_2, nillable=pyxb.binding.datatypes.boolean(1), scope=CTD_ANON_17, documentation='Subcomponents involved in the generation of the data', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 167, 12))) - -CTD_ANON_17._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'RunDetails'), CTD_ANON_3, scope=CTD_ANON_17, documentation='Information related to an instrument run. A run can contain multiple chips, wells, and movies. ', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 202, 2))) - -CTD_ANON_17._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Movie'), CTD_ANON_4, scope=CTD_ANON_17, documentation='A movie corresponds to one acquisition for a chip, one set (look) and one strobe. ', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 246, 2))) - -CTD_ANON_17._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ExpirationData'), CTD_ANON_5, scope=CTD_ANON_17, documentation='Container for the expired consumable data. ', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 270, 2))) - -CTD_ANON_17._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'WellSample'), CTD_ANON_16, scope=CTD_ANON_17, documentation='Container for the sample related data. ', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 314, 2))) - -CTD_ANON_17._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Primary'), CTD_ANON_6, scope=CTD_ANON_17, documentation='Container for the primary analysis related data. ', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 404, 2))) - -CTD_ANON_17._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Secondary'), CTD_ANON_12, scope=CTD_ANON_17, documentation='Container for the primary analysis related data. ', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 561, 2))) - -CTD_ANON_17._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'UserDefinedFields'), _ImportedBinding__pbbase.UserDefinedFieldsType, scope=CTD_ANON_17, documentation='A set of key-value pairs specified by a user via the run input mechanism. Note that uniqueness of keys is not enforced here and so may contain duplicate keys. ', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 595, 2))) - -def _BuildAutomaton_16 (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_16 - del _BuildAutomaton_16 - import pyxb.utils.fac as fac - - counters = set() - cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - counters.add(cc_0) - cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 38, 12)) - counters.add(cc_1) - cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 43, 12)) - counters.add(cc_2) - cc_3 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 65, 12)) - counters.add(cc_3) - cc_4 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 70, 12)) - counters.add(cc_4) - cc_5 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 75, 12)) - counters.add(cc_5) - cc_6 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 80, 12)) - counters.add(cc_6) - cc_7 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 97, 12)) - counters.add(cc_7) - cc_8 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 102, 12)) - counters.add(cc_8) - cc_9 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 107, 12)) - counters.add(cc_9) - cc_10 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 112, 12)) - counters.add(cc_10) - cc_11 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 117, 12)) - counters.add(cc_11) - cc_12 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 122, 12)) - counters.add(cc_12) - cc_13 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 127, 12)) - counters.add(cc_13) - cc_14 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 132, 12)) - counters.add(cc_14) - cc_15 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 137, 12)) - counters.add(cc_15) - cc_16 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 142, 12)) - counters.add(cc_16) - cc_17 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 147, 12)) - counters.add(cc_17) - cc_18 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 152, 12)) - counters.add(cc_18) - cc_19 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 157, 12)) - counters.add(cc_19) - cc_20 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 162, 12)) - counters.add(cc_20) - cc_21 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 167, 12)) - counters.add(cc_21) - states = [] - final_update = None - symbol = pyxb.binding.content.ElementUse(CTD_ANON_17._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - final_update = None - symbol = pyxb.binding.content.ElementUse(CTD_ANON_17._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'MultiJobId')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 38, 12)) - st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_1) - final_update = None - symbol = pyxb.binding.content.ElementUse(CTD_ANON_17._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'ConsensusReadSetRef')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 43, 12)) - st_2 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_2) - final_update = None - symbol = pyxb.binding.content.ElementUse(CTD_ANON_17._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'InstCtrlVer')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 65, 12)) - st_3 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_3) - final_update = None - symbol = pyxb.binding.content.ElementUse(CTD_ANON_17._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'SigProcVer')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 70, 12)) - st_4 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_4) - final_update = None - symbol = pyxb.binding.content.ElementUse(CTD_ANON_17._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'RunDetails')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 75, 12)) - st_5 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_5) - final_update = None - symbol = pyxb.binding.content.ElementUse(CTD_ANON_17._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Movie')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 80, 12)) - st_6 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_6) - final_update = None - symbol = pyxb.binding.content.ElementUse(CTD_ANON_17._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'WellSample')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 85, 12)) - st_7 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_7) - final_update = set() - symbol = pyxb.binding.content.ElementUse(CTD_ANON_17._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Automation')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 92, 12)) - st_8 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_8) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_7, False)) - symbol = pyxb.binding.content.ElementUse(CTD_ANON_17._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'CollectionNumber')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 97, 12)) - st_9 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_9) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_8, False)) - symbol = pyxb.binding.content.ElementUse(CTD_ANON_17._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'CellIndex')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 102, 12)) - st_10 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_10) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_9, False)) - symbol = pyxb.binding.content.ElementUse(CTD_ANON_17._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'SetNumber')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 107, 12)) - st_11 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_11) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_10, False)) - symbol = pyxb.binding.content.ElementUse(CTD_ANON_17._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'CellPac')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 112, 12)) - st_12 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_12) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_11, False)) - symbol = pyxb.binding.content.ElementUse(CTD_ANON_17._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'ControlKit')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 117, 12)) - st_13 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_13) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_12, False)) - symbol = pyxb.binding.content.ElementUse(CTD_ANON_17._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'TemplatePrepKit')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 122, 12)) - st_14 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_14) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_13, False)) - symbol = pyxb.binding.content.ElementUse(CTD_ANON_17._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'BindingKit')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 127, 12)) - st_15 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_15) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_14, False)) - symbol = pyxb.binding.content.ElementUse(CTD_ANON_17._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'SequencingKitPlate')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 132, 12)) - st_16 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_16) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_15, False)) - symbol = pyxb.binding.content.ElementUse(CTD_ANON_17._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'WashKitPlate')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 137, 12)) - st_17 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_17) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_16, False)) - symbol = pyxb.binding.content.ElementUse(CTD_ANON_17._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Primary')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 142, 12)) - st_18 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_18) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_17, False)) - symbol = pyxb.binding.content.ElementUse(CTD_ANON_17._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'PPAConfig')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 147, 12)) - st_19 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_19) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_18, False)) - symbol = pyxb.binding.content.ElementUse(CTD_ANON_17._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Secondary')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 152, 12)) - st_20 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_20) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_19, False)) - symbol = pyxb.binding.content.ElementUse(CTD_ANON_17._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'UserDefinedFields')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 157, 12)) - st_21 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_21) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_20, False)) - symbol = pyxb.binding.content.ElementUse(CTD_ANON_17._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'ExpirationData')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 162, 12)) - st_22 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_22) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_21, False)) - symbol = pyxb.binding.content.ElementUse(CTD_ANON_17._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'ComponentVersions')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioCollectionMetadata.xsd', 167, 12)) - st_23 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_23) - transitions = [] - transitions.append(fac.Transition(st_0, [ - fac.UpdateInstruction(cc_0, True) ])) - transitions.append(fac.Transition(st_1, [ - fac.UpdateInstruction(cc_0, False) ])) - transitions.append(fac.Transition(st_2, [ - fac.UpdateInstruction(cc_0, False) ])) - transitions.append(fac.Transition(st_3, [ - fac.UpdateInstruction(cc_0, False) ])) - transitions.append(fac.Transition(st_4, [ - fac.UpdateInstruction(cc_0, False) ])) - transitions.append(fac.Transition(st_5, [ - fac.UpdateInstruction(cc_0, False) ])) - transitions.append(fac.Transition(st_6, [ - fac.UpdateInstruction(cc_0, False) ])) - transitions.append(fac.Transition(st_7, [ - fac.UpdateInstruction(cc_0, False) ])) - st_0._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_1, [ - fac.UpdateInstruction(cc_1, True) ])) - transitions.append(fac.Transition(st_2, [ - fac.UpdateInstruction(cc_1, False) ])) - transitions.append(fac.Transition(st_3, [ - fac.UpdateInstruction(cc_1, False) ])) - transitions.append(fac.Transition(st_4, [ - fac.UpdateInstruction(cc_1, False) ])) - transitions.append(fac.Transition(st_5, [ - fac.UpdateInstruction(cc_1, False) ])) - transitions.append(fac.Transition(st_6, [ - fac.UpdateInstruction(cc_1, False) ])) - transitions.append(fac.Transition(st_7, [ - fac.UpdateInstruction(cc_1, False) ])) - st_1._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_2, [ - fac.UpdateInstruction(cc_2, True) ])) - transitions.append(fac.Transition(st_3, [ - fac.UpdateInstruction(cc_2, False) ])) - transitions.append(fac.Transition(st_4, [ - fac.UpdateInstruction(cc_2, False) ])) - transitions.append(fac.Transition(st_5, [ - fac.UpdateInstruction(cc_2, False) ])) - transitions.append(fac.Transition(st_6, [ - fac.UpdateInstruction(cc_2, False) ])) - transitions.append(fac.Transition(st_7, [ - fac.UpdateInstruction(cc_2, False) ])) - st_2._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_3, [ - fac.UpdateInstruction(cc_3, True) ])) - transitions.append(fac.Transition(st_4, [ - fac.UpdateInstruction(cc_3, False) ])) - transitions.append(fac.Transition(st_5, [ - fac.UpdateInstruction(cc_3, False) ])) - transitions.append(fac.Transition(st_6, [ - fac.UpdateInstruction(cc_3, False) ])) - transitions.append(fac.Transition(st_7, [ - fac.UpdateInstruction(cc_3, False) ])) - st_3._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_4, [ - fac.UpdateInstruction(cc_4, True) ])) - transitions.append(fac.Transition(st_5, [ - fac.UpdateInstruction(cc_4, False) ])) - transitions.append(fac.Transition(st_6, [ - fac.UpdateInstruction(cc_4, False) ])) - transitions.append(fac.Transition(st_7, [ - fac.UpdateInstruction(cc_4, False) ])) - st_4._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_5, [ - fac.UpdateInstruction(cc_5, True) ])) - transitions.append(fac.Transition(st_6, [ - fac.UpdateInstruction(cc_5, False) ])) - transitions.append(fac.Transition(st_7, [ - fac.UpdateInstruction(cc_5, False) ])) - st_5._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_6, [ - fac.UpdateInstruction(cc_6, True) ])) - transitions.append(fac.Transition(st_7, [ - fac.UpdateInstruction(cc_6, False) ])) - st_6._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_8, [ - ])) - st_7._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_9, [ - ])) - transitions.append(fac.Transition(st_10, [ - ])) - transitions.append(fac.Transition(st_11, [ - ])) - transitions.append(fac.Transition(st_12, [ - ])) - transitions.append(fac.Transition(st_13, [ - ])) - transitions.append(fac.Transition(st_14, [ - ])) - transitions.append(fac.Transition(st_15, [ - ])) - transitions.append(fac.Transition(st_16, [ - ])) - transitions.append(fac.Transition(st_17, [ - ])) - transitions.append(fac.Transition(st_18, [ - ])) - transitions.append(fac.Transition(st_19, [ - ])) - transitions.append(fac.Transition(st_20, [ - ])) - transitions.append(fac.Transition(st_21, [ - ])) - transitions.append(fac.Transition(st_22, [ - ])) - transitions.append(fac.Transition(st_23, [ - ])) - st_8._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_9, [ - fac.UpdateInstruction(cc_7, True) ])) - transitions.append(fac.Transition(st_10, [ - fac.UpdateInstruction(cc_7, False) ])) - transitions.append(fac.Transition(st_11, [ - fac.UpdateInstruction(cc_7, False) ])) - transitions.append(fac.Transition(st_12, [ - fac.UpdateInstruction(cc_7, False) ])) - transitions.append(fac.Transition(st_13, [ - fac.UpdateInstruction(cc_7, False) ])) - transitions.append(fac.Transition(st_14, [ - fac.UpdateInstruction(cc_7, False) ])) - transitions.append(fac.Transition(st_15, [ - fac.UpdateInstruction(cc_7, False) ])) - transitions.append(fac.Transition(st_16, [ - fac.UpdateInstruction(cc_7, False) ])) - transitions.append(fac.Transition(st_17, [ - fac.UpdateInstruction(cc_7, False) ])) - transitions.append(fac.Transition(st_18, [ - fac.UpdateInstruction(cc_7, False) ])) - transitions.append(fac.Transition(st_19, [ - fac.UpdateInstruction(cc_7, False) ])) - transitions.append(fac.Transition(st_20, [ - fac.UpdateInstruction(cc_7, False) ])) - transitions.append(fac.Transition(st_21, [ - fac.UpdateInstruction(cc_7, False) ])) - transitions.append(fac.Transition(st_22, [ - fac.UpdateInstruction(cc_7, False) ])) - transitions.append(fac.Transition(st_23, [ - fac.UpdateInstruction(cc_7, False) ])) - st_9._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_10, [ - fac.UpdateInstruction(cc_8, True) ])) - transitions.append(fac.Transition(st_11, [ - fac.UpdateInstruction(cc_8, False) ])) - transitions.append(fac.Transition(st_12, [ - fac.UpdateInstruction(cc_8, False) ])) - transitions.append(fac.Transition(st_13, [ - fac.UpdateInstruction(cc_8, False) ])) - transitions.append(fac.Transition(st_14, [ - fac.UpdateInstruction(cc_8, False) ])) - transitions.append(fac.Transition(st_15, [ - fac.UpdateInstruction(cc_8, False) ])) - transitions.append(fac.Transition(st_16, [ - fac.UpdateInstruction(cc_8, False) ])) - transitions.append(fac.Transition(st_17, [ - fac.UpdateInstruction(cc_8, False) ])) - transitions.append(fac.Transition(st_18, [ - fac.UpdateInstruction(cc_8, False) ])) - transitions.append(fac.Transition(st_19, [ - fac.UpdateInstruction(cc_8, False) ])) - transitions.append(fac.Transition(st_20, [ - fac.UpdateInstruction(cc_8, False) ])) - transitions.append(fac.Transition(st_21, [ - fac.UpdateInstruction(cc_8, False) ])) - transitions.append(fac.Transition(st_22, [ - fac.UpdateInstruction(cc_8, False) ])) - transitions.append(fac.Transition(st_23, [ - fac.UpdateInstruction(cc_8, False) ])) - st_10._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_11, [ - fac.UpdateInstruction(cc_9, True) ])) - transitions.append(fac.Transition(st_12, [ - fac.UpdateInstruction(cc_9, False) ])) - transitions.append(fac.Transition(st_13, [ - fac.UpdateInstruction(cc_9, False) ])) - transitions.append(fac.Transition(st_14, [ - fac.UpdateInstruction(cc_9, False) ])) - transitions.append(fac.Transition(st_15, [ - fac.UpdateInstruction(cc_9, False) ])) - transitions.append(fac.Transition(st_16, [ - fac.UpdateInstruction(cc_9, False) ])) - transitions.append(fac.Transition(st_17, [ - fac.UpdateInstruction(cc_9, False) ])) - transitions.append(fac.Transition(st_18, [ - fac.UpdateInstruction(cc_9, False) ])) - transitions.append(fac.Transition(st_19, [ - fac.UpdateInstruction(cc_9, False) ])) - transitions.append(fac.Transition(st_20, [ - fac.UpdateInstruction(cc_9, False) ])) - transitions.append(fac.Transition(st_21, [ - fac.UpdateInstruction(cc_9, False) ])) - transitions.append(fac.Transition(st_22, [ - fac.UpdateInstruction(cc_9, False) ])) - transitions.append(fac.Transition(st_23, [ - fac.UpdateInstruction(cc_9, False) ])) - st_11._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_12, [ - fac.UpdateInstruction(cc_10, True) ])) - transitions.append(fac.Transition(st_13, [ - fac.UpdateInstruction(cc_10, False) ])) - transitions.append(fac.Transition(st_14, [ - fac.UpdateInstruction(cc_10, False) ])) - transitions.append(fac.Transition(st_15, [ - fac.UpdateInstruction(cc_10, False) ])) - transitions.append(fac.Transition(st_16, [ - fac.UpdateInstruction(cc_10, False) ])) - transitions.append(fac.Transition(st_17, [ - fac.UpdateInstruction(cc_10, False) ])) - transitions.append(fac.Transition(st_18, [ - fac.UpdateInstruction(cc_10, False) ])) - transitions.append(fac.Transition(st_19, [ - fac.UpdateInstruction(cc_10, False) ])) - transitions.append(fac.Transition(st_20, [ - fac.UpdateInstruction(cc_10, False) ])) - transitions.append(fac.Transition(st_21, [ - fac.UpdateInstruction(cc_10, False) ])) - transitions.append(fac.Transition(st_22, [ - fac.UpdateInstruction(cc_10, False) ])) - transitions.append(fac.Transition(st_23, [ - fac.UpdateInstruction(cc_10, False) ])) - st_12._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_13, [ - fac.UpdateInstruction(cc_11, True) ])) - transitions.append(fac.Transition(st_14, [ - fac.UpdateInstruction(cc_11, False) ])) - transitions.append(fac.Transition(st_15, [ - fac.UpdateInstruction(cc_11, False) ])) - transitions.append(fac.Transition(st_16, [ - fac.UpdateInstruction(cc_11, False) ])) - transitions.append(fac.Transition(st_17, [ - fac.UpdateInstruction(cc_11, False) ])) - transitions.append(fac.Transition(st_18, [ - fac.UpdateInstruction(cc_11, False) ])) - transitions.append(fac.Transition(st_19, [ - fac.UpdateInstruction(cc_11, False) ])) - transitions.append(fac.Transition(st_20, [ - fac.UpdateInstruction(cc_11, False) ])) - transitions.append(fac.Transition(st_21, [ - fac.UpdateInstruction(cc_11, False) ])) - transitions.append(fac.Transition(st_22, [ - fac.UpdateInstruction(cc_11, False) ])) - transitions.append(fac.Transition(st_23, [ - fac.UpdateInstruction(cc_11, False) ])) - st_13._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_14, [ - fac.UpdateInstruction(cc_12, True) ])) - transitions.append(fac.Transition(st_15, [ - fac.UpdateInstruction(cc_12, False) ])) - transitions.append(fac.Transition(st_16, [ - fac.UpdateInstruction(cc_12, False) ])) - transitions.append(fac.Transition(st_17, [ - fac.UpdateInstruction(cc_12, False) ])) - transitions.append(fac.Transition(st_18, [ - fac.UpdateInstruction(cc_12, False) ])) - transitions.append(fac.Transition(st_19, [ - fac.UpdateInstruction(cc_12, False) ])) - transitions.append(fac.Transition(st_20, [ - fac.UpdateInstruction(cc_12, False) ])) - transitions.append(fac.Transition(st_21, [ - fac.UpdateInstruction(cc_12, False) ])) - transitions.append(fac.Transition(st_22, [ - fac.UpdateInstruction(cc_12, False) ])) - transitions.append(fac.Transition(st_23, [ - fac.UpdateInstruction(cc_12, False) ])) - st_14._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_15, [ - fac.UpdateInstruction(cc_13, True) ])) - transitions.append(fac.Transition(st_16, [ - fac.UpdateInstruction(cc_13, False) ])) - transitions.append(fac.Transition(st_17, [ - fac.UpdateInstruction(cc_13, False) ])) - transitions.append(fac.Transition(st_18, [ - fac.UpdateInstruction(cc_13, False) ])) - transitions.append(fac.Transition(st_19, [ - fac.UpdateInstruction(cc_13, False) ])) - transitions.append(fac.Transition(st_20, [ - fac.UpdateInstruction(cc_13, False) ])) - transitions.append(fac.Transition(st_21, [ - fac.UpdateInstruction(cc_13, False) ])) - transitions.append(fac.Transition(st_22, [ - fac.UpdateInstruction(cc_13, False) ])) - transitions.append(fac.Transition(st_23, [ - fac.UpdateInstruction(cc_13, False) ])) - st_15._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_16, [ - fac.UpdateInstruction(cc_14, True) ])) - transitions.append(fac.Transition(st_17, [ - fac.UpdateInstruction(cc_14, False) ])) - transitions.append(fac.Transition(st_18, [ - fac.UpdateInstruction(cc_14, False) ])) - transitions.append(fac.Transition(st_19, [ - fac.UpdateInstruction(cc_14, False) ])) - transitions.append(fac.Transition(st_20, [ - fac.UpdateInstruction(cc_14, False) ])) - transitions.append(fac.Transition(st_21, [ - fac.UpdateInstruction(cc_14, False) ])) - transitions.append(fac.Transition(st_22, [ - fac.UpdateInstruction(cc_14, False) ])) - transitions.append(fac.Transition(st_23, [ - fac.UpdateInstruction(cc_14, False) ])) - st_16._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_17, [ - fac.UpdateInstruction(cc_15, True) ])) - transitions.append(fac.Transition(st_18, [ - fac.UpdateInstruction(cc_15, False) ])) - transitions.append(fac.Transition(st_19, [ - fac.UpdateInstruction(cc_15, False) ])) - transitions.append(fac.Transition(st_20, [ - fac.UpdateInstruction(cc_15, False) ])) - transitions.append(fac.Transition(st_21, [ - fac.UpdateInstruction(cc_15, False) ])) - transitions.append(fac.Transition(st_22, [ - fac.UpdateInstruction(cc_15, False) ])) - transitions.append(fac.Transition(st_23, [ - fac.UpdateInstruction(cc_15, False) ])) - st_17._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_18, [ - fac.UpdateInstruction(cc_16, True) ])) - transitions.append(fac.Transition(st_19, [ - fac.UpdateInstruction(cc_16, False) ])) - transitions.append(fac.Transition(st_20, [ - fac.UpdateInstruction(cc_16, False) ])) - transitions.append(fac.Transition(st_21, [ - fac.UpdateInstruction(cc_16, False) ])) - transitions.append(fac.Transition(st_22, [ - fac.UpdateInstruction(cc_16, False) ])) - transitions.append(fac.Transition(st_23, [ - fac.UpdateInstruction(cc_16, False) ])) - st_18._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_19, [ - fac.UpdateInstruction(cc_17, True) ])) - transitions.append(fac.Transition(st_20, [ - fac.UpdateInstruction(cc_17, False) ])) - transitions.append(fac.Transition(st_21, [ - fac.UpdateInstruction(cc_17, False) ])) - transitions.append(fac.Transition(st_22, [ - fac.UpdateInstruction(cc_17, False) ])) - transitions.append(fac.Transition(st_23, [ - fac.UpdateInstruction(cc_17, False) ])) - st_19._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_20, [ - fac.UpdateInstruction(cc_18, True) ])) - transitions.append(fac.Transition(st_21, [ - fac.UpdateInstruction(cc_18, False) ])) - transitions.append(fac.Transition(st_22, [ - fac.UpdateInstruction(cc_18, False) ])) - transitions.append(fac.Transition(st_23, [ - fac.UpdateInstruction(cc_18, False) ])) - st_20._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_21, [ - fac.UpdateInstruction(cc_19, True) ])) - transitions.append(fac.Transition(st_22, [ - fac.UpdateInstruction(cc_19, False) ])) - transitions.append(fac.Transition(st_23, [ - fac.UpdateInstruction(cc_19, False) ])) - st_21._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_22, [ - fac.UpdateInstruction(cc_20, True) ])) - transitions.append(fac.Transition(st_23, [ - fac.UpdateInstruction(cc_20, False) ])) - st_22._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_23, [ - fac.UpdateInstruction(cc_21, True) ])) - st_23._set_transitionSet(transitions) - return fac.Automaton(states, counters, False, containing_state=None) -CTD_ANON_17._Automaton = _BuildAutomaton_16() - --- a/pbcore/io/dataset/pyxb/_pbrk.py +++ /dev/null @@ -1,1379 +0,0 @@ -# pbcore/io/dataset/pyxb/_pbrk.py -# -*- coding: utf-8 -*- -# PyXB bindings for NM:82fd17ff8c81a0cc423cbd13a9167bcda5f96419 -# Generated 2020-05-05 09:21:48.247789 by PyXB version 1.2.6 using Python 3.7.3.final.0 -# Namespace http://pacificbiosciences.com/PacBioReagentKit.xsd [xmlns:pbrk] - -from __future__ import unicode_literals -import pyxb -import pyxb.binding -import pyxb.binding.saxer -import io -import pyxb.utils.utility -import pyxb.utils.domutils -import sys -import pyxb.utils.six as _six -# Unique identifier for bindings created at the same time -_GenerationUID = pyxb.utils.utility.UniqueIdentifier('urn:uuid:84ba9ef6-8eec-11ea-9839-005056871a22') - -# Version of PyXB used to generate the bindings -_PyXBVersion = '1.2.6' -# Generated bindings are not compatible across PyXB versions -if pyxb.__version__ != _PyXBVersion: - raise pyxb.PyXBVersionError(_PyXBVersion) - -# A holder for module-level binding classes so we can access them from -# inside class definitions where property names may conflict. -_module_typeBindings = pyxb.utils.utility.Object() - -# Import bindings for namespaces imported into schema -import pyxb.binding.datatypes -import _pbbase as _ImportedBinding__pbbase - -# NOTE: All namespace declarations are reserved within the binding -Namespace = pyxb.namespace.NamespaceForURI('http://pacificbiosciences.com/PacBioReagentKit.xsd', create_if_missing=True) -Namespace.configureCategories(['typeBinding', 'elementBinding']) -_Namespace_pbbase = _ImportedBinding__pbbase.Namespace -_Namespace_pbbase.configureCategories(['typeBinding', 'elementBinding']) - -def CreateFromDocument (xml_text, default_namespace=None, location_base=None): - """Parse the given XML and use the document element to create a - Python instance. - - @param xml_text An XML document. This should be data (Python 2 - str or Python 3 bytes), or a text (Python 2 unicode or Python 3 - str) in the L{pyxb._InputEncoding} encoding. - - @keyword default_namespace The L{pyxb.Namespace} instance to use as the - default namespace where there is no default namespace in scope. - If unspecified or C{None}, the namespace of the module containing - this function will be used. - - @keyword location_base: An object to be recorded as the base of all - L{pyxb.utils.utility.Location} instances associated with events and - objects handled by the parser. You might pass the URI from which - the document was obtained. - """ - - if pyxb.XMLStyle_saxer != pyxb._XMLStyle: - dom = pyxb.utils.domutils.StringToDOM(xml_text) - return CreateFromDOM(dom.documentElement, default_namespace=default_namespace) - if default_namespace is None: - default_namespace = Namespace.fallbackNamespace() - saxer = pyxb.binding.saxer.make_parser(fallback_namespace=default_namespace, location_base=location_base) - handler = saxer.getContentHandler() - xmld = xml_text - if isinstance(xmld, _six.text_type): - xmld = xmld.encode(pyxb._InputEncoding) - saxer.parse(io.BytesIO(xmld)) - instance = handler.rootObject() - return instance - -def CreateFromDOM (node, default_namespace=None): - """Create a Python instance from the given DOM node. - The node tag must correspond to an element declaration in this module. - - @deprecated: Forcing use of DOM interface is unnecessary; use L{CreateFromDocument}.""" - if default_namespace is None: - default_namespace = Namespace.fallbackNamespace() - return pyxb.binding.basis.element.AnyCreateFromDOM(node, default_namespace) - - -# Atomic simple type: {http://pacificbiosciences.com/PacBioReagentKit.xsd}TubeLocation -class TubeLocation (pyxb.binding.datatypes.string, pyxb.binding.basis.enumeration_mixin): - - """An atomic simple type.""" - - _ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'TubeLocation') - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 173, 2) - _Documentation = None -TubeLocation._CF_enumeration = pyxb.binding.facets.CF_enumeration(value_datatype=TubeLocation, enum_prefix=None) -TubeLocation.ReagentTube0 = TubeLocation._CF_enumeration.addEnumeration(unicode_value='ReagentTube0', tag='ReagentTube0') -TubeLocation.ReagentTube1 = TubeLocation._CF_enumeration.addEnumeration(unicode_value='ReagentTube1', tag='ReagentTube1') -TubeLocation._InitializeFacetMap(TubeLocation._CF_enumeration) -Namespace.addCategoryObject('typeBinding', 'TubeLocation', TubeLocation) -_module_typeBindings.TubeLocation = TubeLocation - -# Atomic simple type: {http://pacificbiosciences.com/PacBioReagentKit.xsd}TubeSize -class TubeSize (pyxb.binding.datatypes.string, pyxb.binding.basis.enumeration_mixin): - - """An atomic simple type.""" - - _ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'TubeSize') - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 179, 2) - _Documentation = None -TubeSize._CF_enumeration = pyxb.binding.facets.CF_enumeration(value_datatype=TubeSize, enum_prefix=None) -TubeSize.DeepTube = TubeSize._CF_enumeration.addEnumeration(unicode_value='DeepTube', tag='DeepTube') -TubeSize.ShallowTube = TubeSize._CF_enumeration.addEnumeration(unicode_value='ShallowTube', tag='ShallowTube') -TubeSize._InitializeFacetMap(TubeSize._CF_enumeration) -Namespace.addCategoryObject('typeBinding', 'TubeSize', TubeSize) -_module_typeBindings.TubeSize = TubeSize - -# Atomic simple type: {http://pacificbiosciences.com/PacBioReagentKit.xsd}ReagentKey -class ReagentKey (pyxb.binding.datatypes.string, pyxb.binding.basis.enumeration_mixin): - - """An atomic simple type.""" - - _ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'ReagentKey') - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 185, 2) - _Documentation = None -ReagentKey._CF_enumeration = pyxb.binding.facets.CF_enumeration(value_datatype=ReagentKey, enum_prefix=None) -ReagentKey.Base = ReagentKey._CF_enumeration.addEnumeration(unicode_value='Base', tag='Base') -ReagentKey.DTT = ReagentKey._CF_enumeration.addEnumeration(unicode_value='DTT', tag='DTT') -ReagentKey.DilBuffer = ReagentKey._CF_enumeration.addEnumeration(unicode_value='DilBuffer', tag='DilBuffer') -ReagentKey.MineralOil = ReagentKey._CF_enumeration.addEnumeration(unicode_value='MineralOil', tag='MineralOil') -ReagentKey.MIXED_DilBuffer = ReagentKey._CF_enumeration.addEnumeration(unicode_value='MIXED_DilBuffer', tag='MIXED_DilBuffer') -ReagentKey.MIXED_OS = ReagentKey._CF_enumeration.addEnumeration(unicode_value='MIXED_OS', tag='MIXED_OS') -ReagentKey.OSbuffer = ReagentKey._CF_enumeration.addEnumeration(unicode_value='OSbuffer', tag='OSbuffer') -ReagentKey.OSenzyme = ReagentKey._CF_enumeration.addEnumeration(unicode_value='OSenzyme', tag='OSenzyme') -ReagentKey.PhospholinkedNT = ReagentKey._CF_enumeration.addEnumeration(unicode_value='PhospholinkedNT', tag='PhospholinkedNT') -ReagentKey.SABuffer = ReagentKey._CF_enumeration.addEnumeration(unicode_value='SABuffer', tag='SABuffer') -ReagentKey.Spike = ReagentKey._CF_enumeration.addEnumeration(unicode_value='Spike', tag='Spike') -ReagentKey.Streptavidin = ReagentKey._CF_enumeration.addEnumeration(unicode_value='Streptavidin', tag='Streptavidin') -ReagentKey.SubstrateOS = ReagentKey._CF_enumeration.addEnumeration(unicode_value='SubstrateOS', tag='SubstrateOS') -ReagentKey.TSQ = ReagentKey._CF_enumeration.addEnumeration(unicode_value='TSQ', tag='TSQ') -ReagentKey.WashBuffer = ReagentKey._CF_enumeration.addEnumeration(unicode_value='WashBuffer', tag='WashBuffer') -ReagentKey.WettingBuffer = ReagentKey._CF_enumeration.addEnumeration(unicode_value='WettingBuffer', tag='WettingBuffer') -ReagentKey.PCA = ReagentKey._CF_enumeration.addEnumeration(unicode_value='PCA', tag='PCA') -ReagentKey.PCD = ReagentKey._CF_enumeration.addEnumeration(unicode_value='PCD', tag='PCD') -ReagentKey.Analog = ReagentKey._CF_enumeration.addEnumeration(unicode_value='Analog', tag='Analog') -ReagentKey.Sample = ReagentKey._CF_enumeration.addEnumeration(unicode_value='Sample', tag='Sample') -ReagentKey.PEGDilBuffer = ReagentKey._CF_enumeration.addEnumeration(unicode_value='PEGDilBuffer', tag='PEGDilBuffer') -ReagentKey.ExtraBuffer = ReagentKey._CF_enumeration.addEnumeration(unicode_value='ExtraBuffer', tag='ExtraBuffer') -ReagentKey.PrewetBuffer = ReagentKey._CF_enumeration.addEnumeration(unicode_value='PrewetBuffer', tag='PrewetBuffer') -ReagentKey.ProtK = ReagentKey._CF_enumeration.addEnumeration(unicode_value='ProtK', tag='ProtK') -ReagentKey.OilRemBuffer = ReagentKey._CF_enumeration.addEnumeration(unicode_value='OilRemBuffer', tag='OilRemBuffer') -ReagentKey.Solvent2 = ReagentKey._CF_enumeration.addEnumeration(unicode_value='Solvent2', tag='Solvent2') -ReagentKey.Solvent3 = ReagentKey._CF_enumeration.addEnumeration(unicode_value='Solvent3', tag='Solvent3') -ReagentKey.CellWashBuffer4 = ReagentKey._CF_enumeration.addEnumeration(unicode_value='CellWashBuffer4', tag='CellWashBuffer4') -ReagentKey.CellWashBuffer5 = ReagentKey._CF_enumeration.addEnumeration(unicode_value='CellWashBuffer5', tag='CellWashBuffer5') -ReagentKey.CellWashBuffer6 = ReagentKey._CF_enumeration.addEnumeration(unicode_value='CellWashBuffer6', tag='CellWashBuffer6') -ReagentKey.CellWashBuffer7 = ReagentKey._CF_enumeration.addEnumeration(unicode_value='CellWashBuffer7', tag='CellWashBuffer7') -ReagentKey.CellWashBuffer8 = ReagentKey._CF_enumeration.addEnumeration(unicode_value='CellWashBuffer8', tag='CellWashBuffer8') -ReagentKey.CellWashBuffer9 = ReagentKey._CF_enumeration.addEnumeration(unicode_value='CellWashBuffer9', tag='CellWashBuffer9') -ReagentKey.FinalBuffer = ReagentKey._CF_enumeration.addEnumeration(unicode_value='FinalBuffer', tag='FinalBuffer') -ReagentKey.Empty11 = ReagentKey._CF_enumeration.addEnumeration(unicode_value='Empty11', tag='Empty11') -ReagentKey.Empty12 = ReagentKey._CF_enumeration.addEnumeration(unicode_value='Empty12', tag='Empty12') -ReagentKey.Silwet = ReagentKey._CF_enumeration.addEnumeration(unicode_value='Silwet', tag='Silwet') -ReagentKey.WashBuffer2 = ReagentKey._CF_enumeration.addEnumeration(unicode_value='WashBuffer2', tag='WashBuffer2') -ReagentKey.WashBuffer3 = ReagentKey._CF_enumeration.addEnumeration(unicode_value='WashBuffer3', tag='WashBuffer3') -ReagentKey.DL_PEG = ReagentKey._CF_enumeration.addEnumeration(unicode_value='DL_PEG', tag='DL_PEG') -ReagentKey.DL_Analog = ReagentKey._CF_enumeration.addEnumeration(unicode_value='DL_Analog', tag='DL_Analog') -ReagentKey.DL_PCA = ReagentKey._CF_enumeration.addEnumeration(unicode_value='DL_PCA', tag='DL_PCA') -ReagentKey.DL_TSQ = ReagentKey._CF_enumeration.addEnumeration(unicode_value='DL_TSQ', tag='DL_TSQ') -ReagentKey._InitializeFacetMap(ReagentKey._CF_enumeration) -Namespace.addCategoryObject('typeBinding', 'ReagentKey', ReagentKey) -_module_typeBindings.ReagentKey = ReagentKey - -# Complex type [anonymous] with content type ELEMENT_ONLY -class CTD_ANON (pyxb.binding.basis.complexTypeDefinition): - """The root element of the reagent kit standalone file""" - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = None - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 11, 4) - _ElementMap = {} - _AttributeMap = {} - # Base type is pyxb.binding.datatypes.anyType - - # Element {http://pacificbiosciences.com/PacBioReagentKit.xsd}ReagentKit uses Python identifier ReagentKit - __ReagentKit = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'ReagentKit'), 'ReagentKit', '__httppacificbiosciences_comPacBioReagentKit_xsd_CTD_ANON_httppacificbiosciences_comPacBioReagentKit_xsdReagentKit', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 18, 2), ) - - - ReagentKit = property(__ReagentKit.value, __ReagentKit.set, None, None) - - _ElementMap.update({ - __ReagentKit.name() : __ReagentKit - }) - _AttributeMap.update({ - - }) -_module_typeBindings.CTD_ANON = CTD_ANON - - -# Complex type [anonymous] with content type ELEMENT_ONLY -class CTD_ANON_ (pyxb.binding.basis.complexTypeDefinition): - """Complex type [anonymous] with content type ELEMENT_ONLY""" - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = None - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 101, 12) - _ElementMap = {} - _AttributeMap = {} - # Base type is pyxb.binding.datatypes.anyType - - # Element {http://pacificbiosciences.com/PacBioReagentKit.xsd}Reagent uses Python identifier Reagent - __Reagent = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Reagent'), 'Reagent', '__httppacificbiosciences_comPacBioReagentKit_xsd_CTD_ANON__httppacificbiosciences_comPacBioReagentKit_xsdReagent', True, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 17, 2), ) - - - Reagent = property(__Reagent.value, __Reagent.set, None, None) - - _ElementMap.update({ - __Reagent.name() : __Reagent - }) - _AttributeMap.update({ - - }) -_module_typeBindings.CTD_ANON_ = CTD_ANON_ - - -# Complex type [anonymous] with content type ELEMENT_ONLY -class CTD_ANON_2 (pyxb.binding.basis.complexTypeDefinition): - """Complex type [anonymous] with content type ELEMENT_ONLY""" - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = None - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 108, 12) - _ElementMap = {} - _AttributeMap = {} - # Base type is pyxb.binding.datatypes.anyType - - # Element {http://pacificbiosciences.com/PacBioReagentKit.xsd}ReagentTube uses Python identifier ReagentTube - __ReagentTube = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'ReagentTube'), 'ReagentTube', '__httppacificbiosciences_comPacBioReagentKit_xsd_CTD_ANON_2_httppacificbiosciences_comPacBioReagentKit_xsdReagentTube', True, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 19, 2), ) - - - ReagentTube = property(__ReagentTube.value, __ReagentTube.set, None, None) - - _ElementMap.update({ - __ReagentTube.name() : __ReagentTube - }) - _AttributeMap.update({ - - }) -_module_typeBindings.CTD_ANON_2 = CTD_ANON_2 - - -# Complex type [anonymous] with content type ELEMENT_ONLY -class CTD_ANON_3 (pyxb.binding.basis.complexTypeDefinition): - """Complex type [anonymous] with content type ELEMENT_ONLY""" - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = None - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 115, 12) - _ElementMap = {} - _AttributeMap = {} - # Base type is pyxb.binding.datatypes.anyType - - # Element {http://pacificbiosciences.com/PacBioReagentKit.xsd}ReagentPlateRow uses Python identifier ReagentPlateRow - __ReagentPlateRow = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'ReagentPlateRow'), 'ReagentPlateRow', '__httppacificbiosciences_comPacBioReagentKit_xsd_CTD_ANON_3_httppacificbiosciences_comPacBioReagentKit_xsdReagentPlateRow', True, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 20, 2), ) - - - ReagentPlateRow = property(__ReagentPlateRow.value, __ReagentPlateRow.set, None, None) - - _ElementMap.update({ - __ReagentPlateRow.name() : __ReagentPlateRow - }) - _AttributeMap.update({ - - }) -_module_typeBindings.CTD_ANON_3 = CTD_ANON_3 - - -# Complex type [anonymous] with content type ELEMENT_ONLY -class CTD_ANON_4 (pyxb.binding.basis.complexTypeDefinition): - """Complex type [anonymous] with content type ELEMENT_ONLY""" - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = None - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 122, 12) - _ElementMap = {} - _AttributeMap = {} - # Base type is pyxb.binding.datatypes.anyType - - # Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}ChemistryConfig uses Python identifier ChemistryConfig - __ChemistryConfig = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'ChemistryConfig'), 'ChemistryConfig', '__httppacificbiosciences_comPacBioReagentKit_xsd_CTD_ANON_4_httppacificbiosciences_comPacBioBaseDataModel_xsdChemistryConfig', True, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 1044, 2), ) - - - ChemistryConfig = property(__ChemistryConfig.value, __ChemistryConfig.set, None, None) - - _ElementMap.update({ - __ChemistryConfig.name() : __ChemistryConfig - }) - _AttributeMap.update({ - - }) -_module_typeBindings.CTD_ANON_4 = CTD_ANON_4 - - -# Complex type [anonymous] with content type ELEMENT_ONLY -class CTD_ANON_5 (pyxb.binding.basis.complexTypeDefinition): - """Automations that are deemed compatible with this kit. Parameters specified within an automation will override a parameter with the same name and data type specified in the above Defaults section""" - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = None - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 133, 12) - _ElementMap = {} - _AttributeMap = {} - # Base type is pyxb.binding.datatypes.anyType - - # Element {http://pacificbiosciences.com/PacBioReagentKit.xsd}Automation uses Python identifier Automation - __Automation = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Automation'), 'Automation', '__httppacificbiosciences_comPacBioReagentKit_xsd_CTD_ANON_5_httppacificbiosciences_comPacBioReagentKit_xsdAutomation', True, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 135, 16), ) - - - Automation = property(__Automation.value, __Automation.set, None, None) - - _ElementMap.update({ - __Automation.name() : __Automation - }) - _AttributeMap.update({ - - }) -_module_typeBindings.CTD_ANON_5 = CTD_ANON_5 - - -# Complex type {http://pacificbiosciences.com/PacBioReagentKit.xsd}ReagentType with content type ELEMENT_ONLY -class ReagentType (_ImportedBinding__pbbase.BaseEntityType): - """Complex type {http://pacificbiosciences.com/PacBioReagentKit.xsd}ReagentType with content type ELEMENT_ONLY""" - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'ReagentType') - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 84, 2) - _ElementMap = _ImportedBinding__pbbase.BaseEntityType._ElementMap.copy() - _AttributeMap = _ImportedBinding__pbbase.BaseEntityType._AttributeMap.copy() - # Base type is _ImportedBinding__pbbase.BaseEntityType - - # Element Extensions ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Extensions) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Name inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Description inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Tags inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Format inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ResourceId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Version inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute CreatedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ModifiedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ReagentKey uses Python identifier ReagentKey - __ReagentKey = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'ReagentKey'), 'ReagentKey', '__httppacificbiosciences_comPacBioReagentKit_xsd_ReagentType_ReagentKey', _module_typeBindings.ReagentKey, required=True) - __ReagentKey._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 87, 8) - __ReagentKey._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 87, 8) - - ReagentKey = property(__ReagentKey.value, __ReagentKey.set, None, None) - - - # Attribute PlateColumn uses Python identifier PlateColumn - __PlateColumn = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'PlateColumn'), 'PlateColumn', '__httppacificbiosciences_comPacBioReagentKit_xsd_ReagentType_PlateColumn', pyxb.binding.datatypes.string, required=True) - __PlateColumn._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 88, 8) - __PlateColumn._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 88, 8) - - PlateColumn = property(__PlateColumn.value, __PlateColumn.set, None, None) - - - # Attribute Volume uses Python identifier Volume - __Volume = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'Volume'), 'Volume', '__httppacificbiosciences_comPacBioReagentKit_xsd_ReagentType_Volume', pyxb.binding.datatypes.int, required=True) - __Volume._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 89, 8) - __Volume._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 89, 8) - - Volume = property(__Volume.value, __Volume.set, None, None) - - - # Attribute DeadVolume uses Python identifier DeadVolume - __DeadVolume = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'DeadVolume'), 'DeadVolume', '__httppacificbiosciences_comPacBioReagentKit_xsd_ReagentType_DeadVolume', pyxb.binding.datatypes.int, required=True) - __DeadVolume._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 90, 8) - __DeadVolume._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 90, 8) - - DeadVolume = property(__DeadVolume.value, __DeadVolume.set, None, None) - - - # Attribute ActiveInHour uses Python identifier ActiveInHour - __ActiveInHour = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'ActiveInHour'), 'ActiveInHour', '__httppacificbiosciences_comPacBioReagentKit_xsd_ReagentType_ActiveInHour', pyxb.binding.datatypes.int, required=True) - __ActiveInHour._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 91, 8) - __ActiveInHour._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 91, 8) - - ActiveInHour = property(__ActiveInHour.value, __ActiveInHour.set, None, None) - - - # Attribute Rows uses Python identifier Rows - __Rows = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'Rows'), 'Rows', '__httppacificbiosciences_comPacBioReagentKit_xsd_ReagentType_Rows', pyxb.binding.datatypes.string, required=True) - __Rows._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 92, 8) - __Rows._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 92, 8) - - Rows = property(__Rows.value, __Rows.set, None, None) - - _ElementMap.update({ - - }) - _AttributeMap.update({ - __ReagentKey.name() : __ReagentKey, - __PlateColumn.name() : __PlateColumn, - __Volume.name() : __Volume, - __DeadVolume.name() : __DeadVolume, - __ActiveInHour.name() : __ActiveInHour, - __Rows.name() : __Rows - }) -_module_typeBindings.ReagentType = ReagentType -Namespace.addCategoryObject('typeBinding', 'ReagentType', ReagentType) - - -# Complex type {http://pacificbiosciences.com/PacBioReagentKit.xsd}ReagentKitType with content type ELEMENT_ONLY -class ReagentKitType (_ImportedBinding__pbbase.BaseEntityType): - """Complex type {http://pacificbiosciences.com/PacBioReagentKit.xsd}ReagentKitType with content type ELEMENT_ONLY""" - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'ReagentKitType') - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 96, 2) - _ElementMap = _ImportedBinding__pbbase.BaseEntityType._ElementMap.copy() - _AttributeMap = _ImportedBinding__pbbase.BaseEntityType._AttributeMap.copy() - # Base type is _ImportedBinding__pbbase.BaseEntityType - - # Element Extensions ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Extensions) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Element {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Defaults uses Python identifier Defaults - __Defaults = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'Defaults'), 'Defaults', '__httppacificbiosciences_comPacBioReagentKit_xsd_ReagentKitType_httppacificbiosciences_comPacBioBaseDataModel_xsdDefaults', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 1045, 2), ) - - - Defaults = property(__Defaults.value, __Defaults.set, None, 'Default paramaters and filters which may be applied to PartNumber types in order to constrain them via parameterization') - - - # Element {http://pacificbiosciences.com/PacBioReagentKit.xsd}Reagents uses Python identifier Reagents - __Reagents = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Reagents'), 'Reagents', '__httppacificbiosciences_comPacBioReagentKit_xsd_ReagentKitType_httppacificbiosciences_comPacBioReagentKit_xsdReagents', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 100, 10), ) - - - Reagents = property(__Reagents.value, __Reagents.set, None, None) - - - # Element {http://pacificbiosciences.com/PacBioReagentKit.xsd}ReagentTubes uses Python identifier ReagentTubes - __ReagentTubes = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'ReagentTubes'), 'ReagentTubes', '__httppacificbiosciences_comPacBioReagentKit_xsd_ReagentKitType_httppacificbiosciences_comPacBioReagentKit_xsdReagentTubes', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 107, 10), ) - - - ReagentTubes = property(__ReagentTubes.value, __ReagentTubes.set, None, None) - - - # Element {http://pacificbiosciences.com/PacBioReagentKit.xsd}ReagentPlateRows uses Python identifier ReagentPlateRows - __ReagentPlateRows = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'ReagentPlateRows'), 'ReagentPlateRows', '__httppacificbiosciences_comPacBioReagentKit_xsd_ReagentKitType_httppacificbiosciences_comPacBioReagentKit_xsdReagentPlateRows', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 114, 10), ) - - - ReagentPlateRows = property(__ReagentPlateRows.value, __ReagentPlateRows.set, None, None) - - - # Element {http://pacificbiosciences.com/PacBioReagentKit.xsd}ChemistryConfigs uses Python identifier ChemistryConfigs - __ChemistryConfigs = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'ChemistryConfigs'), 'ChemistryConfigs', '__httppacificbiosciences_comPacBioReagentKit_xsd_ReagentKitType_httppacificbiosciences_comPacBioReagentKit_xsdChemistryConfigs', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 121, 10), ) - - - ChemistryConfigs = property(__ChemistryConfigs.value, __ChemistryConfigs.set, None, None) - - - # Element {http://pacificbiosciences.com/PacBioReagentKit.xsd}Automations uses Python identifier Automations - __Automations = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'Automations'), 'Automations', '__httppacificbiosciences_comPacBioReagentKit_xsd_ReagentKitType_httppacificbiosciences_comPacBioReagentKit_xsdAutomations', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 129, 10), ) - - - Automations = property(__Automations.value, __Automations.set, None, 'Automations that are deemed compatible with this kit. Parameters specified within an automation will override a parameter with the same name and data type specified in the above Defaults section') - - - # Attribute Name inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Description inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Tags inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Format inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ResourceId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Version inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute CreatedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ModifiedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ProductCode uses Python identifier ProductCode - __ProductCode = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'ProductCode'), 'ProductCode', '__httppacificbiosciences_comPacBioReagentKit_xsd_ReagentKitType_ProductCode', pyxb.binding.datatypes.string) - __ProductCode._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 140, 8) - __ProductCode._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 140, 8) - - ProductCode = property(__ProductCode.value, __ProductCode.set, None, None) - - - # Attribute PlateType uses Python identifier PlateType - __PlateType = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'PlateType'), 'PlateType', '__httppacificbiosciences_comPacBioReagentKit_xsd_ReagentKitType_PlateType', pyxb.binding.datatypes.string) - __PlateType._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 141, 8) - __PlateType._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 141, 8) - - PlateType = property(__PlateType.value, __PlateType.set, None, None) - - - # Attribute ActiveInHour uses Python identifier ActiveInHour - __ActiveInHour = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'ActiveInHour'), 'ActiveInHour', '__httppacificbiosciences_comPacBioReagentKit_xsd_ReagentKitType_ActiveInHour', pyxb.binding.datatypes.int) - __ActiveInHour._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 142, 8) - __ActiveInHour._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 142, 8) - - ActiveInHour = property(__ActiveInHour.value, __ActiveInHour.set, None, None) - - - # Attribute BasesPerSecond uses Python identifier BasesPerSecond - __BasesPerSecond = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'BasesPerSecond'), 'BasesPerSecond', '__httppacificbiosciences_comPacBioReagentKit_xsd_ReagentKitType_BasesPerSecond', pyxb.binding.datatypes.decimal) - __BasesPerSecond._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 143, 8) - __BasesPerSecond._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 143, 8) - - BasesPerSecond = property(__BasesPerSecond.value, __BasesPerSecond.set, None, None) - - - # Attribute AcquisitionCount uses Python identifier AcquisitionCount - __AcquisitionCount = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'AcquisitionCount'), 'AcquisitionCount', '__httppacificbiosciences_comPacBioReagentKit_xsd_ReagentKitType_AcquisitionCount', pyxb.binding.datatypes.int) - __AcquisitionCount._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 144, 8) - __AcquisitionCount._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 144, 8) - - AcquisitionCount = property(__AcquisitionCount.value, __AcquisitionCount.set, None, None) - - _ElementMap.update({ - __Defaults.name() : __Defaults, - __Reagents.name() : __Reagents, - __ReagentTubes.name() : __ReagentTubes, - __ReagentPlateRows.name() : __ReagentPlateRows, - __ChemistryConfigs.name() : __ChemistryConfigs, - __Automations.name() : __Automations - }) - _AttributeMap.update({ - __ProductCode.name() : __ProductCode, - __PlateType.name() : __PlateType, - __ActiveInHour.name() : __ActiveInHour, - __BasesPerSecond.name() : __BasesPerSecond, - __AcquisitionCount.name() : __AcquisitionCount - }) -_module_typeBindings.ReagentKitType = ReagentKitType -Namespace.addCategoryObject('typeBinding', 'ReagentKitType', ReagentKitType) - - -# Complex type {http://pacificbiosciences.com/PacBioReagentKit.xsd}ReagentTubeType with content type ELEMENT_ONLY -class ReagentTubeType (_ImportedBinding__pbbase.BaseEntityType): - """Complex type {http://pacificbiosciences.com/PacBioReagentKit.xsd}ReagentTubeType with content type ELEMENT_ONLY""" - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'ReagentTubeType') - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 148, 2) - _ElementMap = _ImportedBinding__pbbase.BaseEntityType._ElementMap.copy() - _AttributeMap = _ImportedBinding__pbbase.BaseEntityType._AttributeMap.copy() - # Base type is _ImportedBinding__pbbase.BaseEntityType - - # Element Extensions ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Extensions) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Name inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Description inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Tags inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Format inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ResourceId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Version inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute CreatedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ModifiedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ProductCode uses Python identifier ProductCode - __ProductCode = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'ProductCode'), 'ProductCode', '__httppacificbiosciences_comPacBioReagentKit_xsd_ReagentTubeType_ProductCode', pyxb.binding.datatypes.string, required=True) - __ProductCode._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 151, 8) - __ProductCode._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 151, 8) - - ProductCode = property(__ProductCode.value, __ProductCode.set, None, None) - - - # Attribute ReagentKey uses Python identifier ReagentKey - __ReagentKey = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'ReagentKey'), 'ReagentKey', '__httppacificbiosciences_comPacBioReagentKit_xsd_ReagentTubeType_ReagentKey', _module_typeBindings.ReagentKey, required=True) - __ReagentKey._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 152, 8) - __ReagentKey._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 152, 8) - - ReagentKey = property(__ReagentKey.value, __ReagentKey.set, None, None) - - - # Attribute Volume uses Python identifier Volume - __Volume = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'Volume'), 'Volume', '__httppacificbiosciences_comPacBioReagentKit_xsd_ReagentTubeType_Volume', pyxb.binding.datatypes.short, required=True) - __Volume._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 153, 8) - __Volume._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 153, 8) - - Volume = property(__Volume.value, __Volume.set, None, None) - - - # Attribute UsageVolume uses Python identifier UsageVolume - __UsageVolume = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'UsageVolume'), 'UsageVolume', '__httppacificbiosciences_comPacBioReagentKit_xsd_ReagentTubeType_UsageVolume', pyxb.binding.datatypes.double, required=True) - __UsageVolume._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 154, 8) - __UsageVolume._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 154, 8) - - UsageVolume = property(__UsageVolume.value, __UsageVolume.set, None, None) - - - # Attribute UsageKey uses Python identifier UsageKey - __UsageKey = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'UsageKey'), 'UsageKey', '__httppacificbiosciences_comPacBioReagentKit_xsd_ReagentTubeType_UsageKey', pyxb.binding.datatypes.string, required=True) - __UsageKey._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 155, 8) - __UsageKey._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 155, 8) - - UsageKey = property(__UsageKey.value, __UsageKey.set, None, None) - - - # Attribute DeadVolume uses Python identifier DeadVolume - __DeadVolume = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'DeadVolume'), 'DeadVolume', '__httppacificbiosciences_comPacBioReagentKit_xsd_ReagentTubeType_DeadVolume', pyxb.binding.datatypes.short, required=True) - __DeadVolume._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 156, 8) - __DeadVolume._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 156, 8) - - DeadVolume = property(__DeadVolume.value, __DeadVolume.set, None, None) - - - # Attribute ActiveInHour uses Python identifier ActiveInHour - __ActiveInHour = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'ActiveInHour'), 'ActiveInHour', '__httppacificbiosciences_comPacBioReagentKit_xsd_ReagentTubeType_ActiveInHour', pyxb.binding.datatypes.int, required=True) - __ActiveInHour._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 157, 8) - __ActiveInHour._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 157, 8) - - ActiveInHour = property(__ActiveInHour.value, __ActiveInHour.set, None, None) - - - # Attribute TubeWellType uses Python identifier TubeWellType - __TubeWellType = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'TubeWellType'), 'TubeWellType', '__httppacificbiosciences_comPacBioReagentKit_xsd_ReagentTubeType_TubeWellType', _module_typeBindings.TubeSize, required=True) - __TubeWellType._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 158, 8) - __TubeWellType._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 158, 8) - - TubeWellType = property(__TubeWellType.value, __TubeWellType.set, None, None) - - - # Attribute ReagentTubeType uses Python identifier ReagentTubeType - __ReagentTubeType = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'ReagentTubeType'), 'ReagentTubeType', '__httppacificbiosciences_comPacBioReagentKit_xsd_ReagentTubeType_ReagentTubeType', _module_typeBindings.TubeLocation, required=True) - __ReagentTubeType._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 159, 8) - __ReagentTubeType._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 159, 8) - - ReagentTubeType = property(__ReagentTubeType.value, __ReagentTubeType.set, None, None) - - - # Attribute InitialUse uses Python identifier InitialUse - __InitialUse = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'InitialUse'), 'InitialUse', '__httppacificbiosciences_comPacBioReagentKit_xsd_ReagentTubeType_InitialUse', pyxb.binding.datatypes.dateTime) - __InitialUse._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 160, 8) - __InitialUse._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 160, 8) - - InitialUse = property(__InitialUse.value, __InitialUse.set, None, None) - - _ElementMap.update({ - - }) - _AttributeMap.update({ - __ProductCode.name() : __ProductCode, - __ReagentKey.name() : __ReagentKey, - __Volume.name() : __Volume, - __UsageVolume.name() : __UsageVolume, - __UsageKey.name() : __UsageKey, - __DeadVolume.name() : __DeadVolume, - __ActiveInHour.name() : __ActiveInHour, - __TubeWellType.name() : __TubeWellType, - __ReagentTubeType.name() : __ReagentTubeType, - __InitialUse.name() : __InitialUse - }) -_module_typeBindings.ReagentTubeType = ReagentTubeType -Namespace.addCategoryObject('typeBinding', 'ReagentTubeType', ReagentTubeType) - - -# Complex type {http://pacificbiosciences.com/PacBioReagentKit.xsd}ReagentPlateRowType with content type ELEMENT_ONLY -class ReagentPlateRowType (_ImportedBinding__pbbase.BaseEntityType): - """Complex type {http://pacificbiosciences.com/PacBioReagentKit.xsd}ReagentPlateRowType with content type ELEMENT_ONLY""" - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'ReagentPlateRowType') - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 164, 2) - _ElementMap = _ImportedBinding__pbbase.BaseEntityType._ElementMap.copy() - _AttributeMap = _ImportedBinding__pbbase.BaseEntityType._AttributeMap.copy() - # Base type is _ImportedBinding__pbbase.BaseEntityType - - # Element Extensions ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Extensions) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Name inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Description inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Tags inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Format inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ResourceId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Version inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute CreatedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ModifiedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute PlateRow uses Python identifier PlateRow - __PlateRow = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'PlateRow'), 'PlateRow', '__httppacificbiosciences_comPacBioReagentKit_xsd_ReagentPlateRowType_PlateRow', pyxb.binding.datatypes.string, required=True) - __PlateRow._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 167, 8) - __PlateRow._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 167, 8) - - PlateRow = property(__PlateRow.value, __PlateRow.set, None, None) - - - # Attribute InitialUse uses Python identifier InitialUse - __InitialUse = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'InitialUse'), 'InitialUse', '__httppacificbiosciences_comPacBioReagentKit_xsd_ReagentPlateRowType_InitialUse', pyxb.binding.datatypes.dateTime) - __InitialUse._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 168, 8) - __InitialUse._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 168, 8) - - InitialUse = property(__InitialUse.value, __InitialUse.set, None, None) - - - # Attribute Reaction uses Python identifier Reaction - __Reaction = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'Reaction'), 'Reaction', '__httppacificbiosciences_comPacBioReagentKit_xsd_ReagentPlateRowType_Reaction', pyxb.binding.datatypes.int, required=True) - __Reaction._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 169, 8) - __Reaction._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 169, 8) - - Reaction = property(__Reaction.value, __Reaction.set, None, None) - - _ElementMap.update({ - - }) - _AttributeMap.update({ - __PlateRow.name() : __PlateRow, - __InitialUse.name() : __InitialUse, - __Reaction.name() : __Reaction - }) -_module_typeBindings.ReagentPlateRowType = ReagentPlateRowType -Namespace.addCategoryObject('typeBinding', 'ReagentPlateRowType', ReagentPlateRowType) - - -# Complex type {http://pacificbiosciences.com/PacBioReagentKit.xsd}SupplyKitSequencing with content type ELEMENT_ONLY -class SupplyKitSequencing (_ImportedBinding__pbbase.PartNumberType): - """A more specific template kit representation (includes SupplyKit fields). """ - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'SupplyKitSequencing') - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 21, 2) - _ElementMap = _ImportedBinding__pbbase.PartNumberType._ElementMap.copy() - _AttributeMap = _ImportedBinding__pbbase.PartNumberType._AttributeMap.copy() - # Base type is _ImportedBinding__pbbase.PartNumberType - - # Element Extensions ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Extensions) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Element CheckSum ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}CheckSum) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}DataEntityType - - # Element Defaults ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Defaults) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}PartNumberType - - # Element {http://pacificbiosciences.com/PacBioReagentKit.xsd}ReagentAutomationName uses Python identifier ReagentAutomationName - __ReagentAutomationName = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'ReagentAutomationName'), 'ReagentAutomationName', '__httppacificbiosciences_comPacBioReagentKit_xsd_SupplyKitSequencing_httppacificbiosciences_comPacBioReagentKit_xsdReagentAutomationName', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 28, 10), ) - - - ReagentAutomationName = property(__ReagentAutomationName.value, __ReagentAutomationName.set, None, 'The reagent-mixing protocol used. ') - - - # Element {http://pacificbiosciences.com/PacBioReagentKit.xsd}ReagentTubes uses Python identifier ReagentTubes - __ReagentTubes = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'ReagentTubes'), 'ReagentTubes', '__httppacificbiosciences_comPacBioReagentKit_xsd_SupplyKitSequencing_httppacificbiosciences_comPacBioReagentKit_xsdReagentTubes', True, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 33, 10), ) - - - ReagentTubes = property(__ReagentTubes.value, __ReagentTubes.set, None, "Tubes associated with the reagent kit - can have up to two; don't forget to set the location, 0 or 1") - - - # Element {http://pacificbiosciences.com/PacBioReagentKit.xsd}SequencingChemistry uses Python identifier SequencingChemistry - __SequencingChemistry = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'SequencingChemistry'), 'SequencingChemistry', '__httppacificbiosciences_comPacBioReagentKit_xsd_SupplyKitSequencing_httppacificbiosciences_comPacBioReagentKit_xsdSequencingChemistry', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 38, 10), ) - - - SequencingChemistry = property(__SequencingChemistry.value, __SequencingChemistry.set, None, None) - - - # Element {http://pacificbiosciences.com/PacBioReagentKit.xsd}SequencingKitDefinition uses Python identifier SequencingKitDefinition - __SequencingKitDefinition = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'SequencingKitDefinition'), 'SequencingKitDefinition', '__httppacificbiosciences_comPacBioReagentKit_xsd_SupplyKitSequencing_httppacificbiosciences_comPacBioReagentKit_xsdSequencingKitDefinition', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 39, 10), ) - - - SequencingKitDefinition = property(__SequencingKitDefinition.value, __SequencingKitDefinition.set, None, None) - - - # Attribute Name inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Description inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Tags inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Format inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ResourceId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Version inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute CreatedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ModifiedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ValueDataType inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}DataEntityType - - # Attribute SimpleValue inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}DataEntityType - - # Attribute MetaType inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}DataEntityType - - # Attribute TimeStampedName inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}DataEntityType - - # Attribute PartNumber inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}PartNumberType - - # Attribute LotNumber inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}PartNumberType - - # Attribute Barcode inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}PartNumberType - - # Attribute ExpirationDate inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}PartNumberType - - # Attribute IsObsolete inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}PartNumberType - - # Attribute IsRestricted inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}PartNumberType - - # Attribute ChipType inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}PartNumberType - - # Attribute Location uses Python identifier Location - __Location = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'Location'), 'Location', '__httppacificbiosciences_comPacBioReagentKit_xsd_SupplyKitSequencing_Location', pyxb.binding.datatypes.int, unicode_default='0') - __Location._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 41, 8) - __Location._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 41, 8) - - Location = property(__Location.value, __Location.set, None, 'The location of the supply kit - for a reagent plate, it could be 0 or 1, and for a tube it could be 0 or 1') - - - # Attribute MaxCollections uses Python identifier MaxCollections - __MaxCollections = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'MaxCollections'), 'MaxCollections', '__httppacificbiosciences_comPacBioReagentKit_xsd_SupplyKitSequencing_MaxCollections', pyxb.binding.datatypes.int, unicode_default='8') - __MaxCollections._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 46, 8) - __MaxCollections._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 46, 8) - - MaxCollections = property(__MaxCollections.value, __MaxCollections.set, None, 'The number of collections this supply kit is capable of') - - - # Attribute ActiveHours uses Python identifier ActiveHours - __ActiveHours = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'ActiveHours'), 'ActiveHours', '__httppacificbiosciences_comPacBioReagentKit_xsd_SupplyKitSequencing_ActiveHours', pyxb.binding.datatypes.double, unicode_default='0') - __ActiveHours._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 51, 8) - __ActiveHours._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 51, 8) - - ActiveHours = property(__ActiveHours.value, __ActiveHours.set, None, 'The number of hours that the kit has been active (i.e. hours since first opened)') - - - # Attribute ActiveHoursLimit uses Python identifier ActiveHoursLimit - __ActiveHoursLimit = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'ActiveHoursLimit'), 'ActiveHoursLimit', '__httppacificbiosciences_comPacBioReagentKit_xsd_SupplyKitSequencing_ActiveHoursLimit', pyxb.binding.datatypes.int, unicode_default='0') - __ActiveHoursLimit._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 56, 8) - __ActiveHoursLimit._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 56, 8) - - ActiveHoursLimit = property(__ActiveHoursLimit.value, __ActiveHoursLimit.set, None, 'The limit on the number of hours after opening that a kit can be used') - - - # Attribute MaxRunHours uses Python identifier MaxRunHours - __MaxRunHours = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'MaxRunHours'), 'MaxRunHours', '__httppacificbiosciences_comPacBioReagentKit_xsd_SupplyKitSequencing_MaxRunHours', pyxb.binding.datatypes.double, unicode_default='-1') - __MaxRunHours._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 61, 8) - __MaxRunHours._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 61, 8) - - MaxRunHours = property(__MaxRunHours.value, __MaxRunHours.set, None, 'The maximum run hours for a run using this this kit. A negative value indicates unlimited run time.') - - - # Attribute NumOilTubes uses Python identifier NumOilTubes - __NumOilTubes = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'NumOilTubes'), 'NumOilTubes', '__httppacificbiosciences_comPacBioReagentKit_xsd_SupplyKitSequencing_NumOilTubes', pyxb.binding.datatypes.int, unicode_default='1') - __NumOilTubes._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 66, 8) - __NumOilTubes._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 66, 8) - - NumOilTubes = property(__NumOilTubes.value, __NumOilTubes.set, None, 'The number of oil tubes required to support this sequencing kit.') - - - # Attribute NumOseTubes uses Python identifier NumOseTubes - __NumOseTubes = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'NumOseTubes'), 'NumOseTubes', '__httppacificbiosciences_comPacBioReagentKit_xsd_SupplyKitSequencing_NumOseTubes', pyxb.binding.datatypes.int, unicode_default='1') - __NumOseTubes._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 71, 8) - __NumOseTubes._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 71, 8) - - NumOseTubes = property(__NumOseTubes.value, __NumOseTubes.set, None, 'The number of os enzyme tubes required to support this sequencing kit.') - - - # Attribute SupportsDynamicLoading uses Python identifier SupportsDynamicLoading - __SupportsDynamicLoading = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'SupportsDynamicLoading'), 'SupportsDynamicLoading', '__httppacificbiosciences_comPacBioReagentKit_xsd_SupplyKitSequencing_SupportsDynamicLoading', pyxb.binding.datatypes.boolean) - __SupportsDynamicLoading._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 76, 8) - __SupportsDynamicLoading._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 76, 8) - - SupportsDynamicLoading = property(__SupportsDynamicLoading.value, __SupportsDynamicLoading.set, None, 'Does this automation support dynamic loading?') - - _ElementMap.update({ - __ReagentAutomationName.name() : __ReagentAutomationName, - __ReagentTubes.name() : __ReagentTubes, - __SequencingChemistry.name() : __SequencingChemistry, - __SequencingKitDefinition.name() : __SequencingKitDefinition - }) - _AttributeMap.update({ - __Location.name() : __Location, - __MaxCollections.name() : __MaxCollections, - __ActiveHours.name() : __ActiveHours, - __ActiveHoursLimit.name() : __ActiveHoursLimit, - __MaxRunHours.name() : __MaxRunHours, - __NumOilTubes.name() : __NumOilTubes, - __NumOseTubes.name() : __NumOseTubes, - __SupportsDynamicLoading.name() : __SupportsDynamicLoading - }) -_module_typeBindings.SupplyKitSequencing = SupplyKitSequencing -Namespace.addCategoryObject('typeBinding', 'SupplyKitSequencing', SupplyKitSequencing) - - -PacBioReagentKit = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'PacBioReagentKit'), CTD_ANON, documentation='The root element of the reagent kit standalone file', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 7, 2)) -Namespace.addCategoryObject('elementBinding', PacBioReagentKit.name().localName(), PacBioReagentKit) - -Reagent = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Reagent'), ReagentType, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 17, 2)) -Namespace.addCategoryObject('elementBinding', Reagent.name().localName(), Reagent) - -ReagentKit = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ReagentKit'), ReagentKitType, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 18, 2)) -Namespace.addCategoryObject('elementBinding', ReagentKit.name().localName(), ReagentKit) - -ReagentTube = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ReagentTube'), ReagentTubeType, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 19, 2)) -Namespace.addCategoryObject('elementBinding', ReagentTube.name().localName(), ReagentTube) - -ReagentPlateRow = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ReagentPlateRow'), ReagentPlateRowType, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 20, 2)) -Namespace.addCategoryObject('elementBinding', ReagentPlateRow.name().localName(), ReagentPlateRow) - - - -CTD_ANON._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ReagentKit'), ReagentKitType, scope=CTD_ANON, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 18, 2))) - -def _BuildAutomaton (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton - del _BuildAutomaton - import pyxb.utils.fac as fac - - counters = set() - states = [] - final_update = set() - symbol = pyxb.binding.content.ElementUse(CTD_ANON._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'ReagentKit')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 13, 8)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - transitions = [] - st_0._set_transitionSet(transitions) - return fac.Automaton(states, counters, False, containing_state=None) -CTD_ANON._Automaton = _BuildAutomaton() - - - - -CTD_ANON_._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Reagent'), ReagentType, scope=CTD_ANON_, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 17, 2))) - -def _BuildAutomaton_ (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_ - del _BuildAutomaton_ - import pyxb.utils.fac as fac - - counters = set() - states = [] - final_update = set() - symbol = pyxb.binding.content.ElementUse(CTD_ANON_._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Reagent')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 103, 16)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - transitions = [] - transitions.append(fac.Transition(st_0, [ - ])) - st_0._set_transitionSet(transitions) - return fac.Automaton(states, counters, False, containing_state=None) -CTD_ANON_._Automaton = _BuildAutomaton_() - - - - -CTD_ANON_2._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ReagentTube'), ReagentTubeType, scope=CTD_ANON_2, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 19, 2))) - -def _BuildAutomaton_2 (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_2 - del _BuildAutomaton_2 - import pyxb.utils.fac as fac - - counters = set() - states = [] - final_update = set() - symbol = pyxb.binding.content.ElementUse(CTD_ANON_2._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'ReagentTube')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 110, 16)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - transitions = [] - transitions.append(fac.Transition(st_0, [ - ])) - st_0._set_transitionSet(transitions) - return fac.Automaton(states, counters, False, containing_state=None) -CTD_ANON_2._Automaton = _BuildAutomaton_2() - - - - -CTD_ANON_3._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ReagentPlateRow'), ReagentPlateRowType, scope=CTD_ANON_3, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 20, 2))) - -def _BuildAutomaton_3 (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_3 - del _BuildAutomaton_3 - import pyxb.utils.fac as fac - - counters = set() - states = [] - final_update = set() - symbol = pyxb.binding.content.ElementUse(CTD_ANON_3._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'ReagentPlateRow')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 117, 16)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - transitions = [] - transitions.append(fac.Transition(st_0, [ - ])) - st_0._set_transitionSet(transitions) - return fac.Automaton(states, counters, False, containing_state=None) -CTD_ANON_3._Automaton = _BuildAutomaton_3() - - - - -CTD_ANON_4._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'ChemistryConfig'), _ImportedBinding__pbbase.SequencingChemistryConfig, scope=CTD_ANON_4, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 1044, 2))) - -def _BuildAutomaton_4 (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_4 - del _BuildAutomaton_4 - import pyxb.utils.fac as fac - - counters = set() - states = [] - final_update = set() - symbol = pyxb.binding.content.ElementUse(CTD_ANON_4._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'ChemistryConfig')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 124, 16)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - transitions = [] - transitions.append(fac.Transition(st_0, [ - ])) - st_0._set_transitionSet(transitions) - return fac.Automaton(states, counters, False, containing_state=None) -CTD_ANON_4._Automaton = _BuildAutomaton_4() - - - - -CTD_ANON_5._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Automation'), _ImportedBinding__pbbase.AutomationType, scope=CTD_ANON_5, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 135, 16))) - -def _BuildAutomaton_5 (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_5 - del _BuildAutomaton_5 - import pyxb.utils.fac as fac - - counters = set() - states = [] - final_update = set() - symbol = pyxb.binding.content.ElementUse(CTD_ANON_5._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Automation')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 135, 16)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - transitions = [] - transitions.append(fac.Transition(st_0, [ - ])) - st_0._set_transitionSet(transitions) - return fac.Automaton(states, counters, False, containing_state=None) -CTD_ANON_5._Automaton = _BuildAutomaton_5() - - - - -def _BuildAutomaton_6 (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_6 - del _BuildAutomaton_6 - import pyxb.utils.fac as fac - - counters = set() - cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - counters.add(cc_0) - states = [] - final_update = set() - final_update.add(fac.UpdateInstruction(cc_0, False)) - symbol = pyxb.binding.content.ElementUse(ReagentType._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - transitions = [] - transitions.append(fac.Transition(st_0, [ - fac.UpdateInstruction(cc_0, True) ])) - st_0._set_transitionSet(transitions) - return fac.Automaton(states, counters, True, containing_state=None) -ReagentType._Automaton = _BuildAutomaton_6() - - - - -ReagentKitType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'Defaults'), _ImportedBinding__pbbase.DefaultsType, nillable=pyxb.binding.datatypes.boolean(1), scope=ReagentKitType, documentation='Default paramaters and filters which may be applied to PartNumber types in order to constrain them via parameterization', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 1045, 2))) - -ReagentKitType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Reagents'), CTD_ANON_, scope=ReagentKitType, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 100, 10))) - -ReagentKitType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ReagentTubes'), CTD_ANON_2, scope=ReagentKitType, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 107, 10))) - -ReagentKitType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ReagentPlateRows'), CTD_ANON_3, scope=ReagentKitType, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 114, 10))) - -ReagentKitType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ChemistryConfigs'), CTD_ANON_4, scope=ReagentKitType, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 121, 10))) - -ReagentKitType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'Automations'), CTD_ANON_5, nillable=pyxb.binding.datatypes.boolean(1), scope=ReagentKitType, documentation='Automations that are deemed compatible with this kit. Parameters specified within an automation will override a parameter with the same name and data type specified in the above Defaults section', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 129, 10))) - -def _BuildAutomaton_7 (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_7 - del _BuildAutomaton_7 - import pyxb.utils.fac as fac - - counters = set() - cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - counters.add(cc_0) - cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 128, 10)) - counters.add(cc_1) - cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 129, 10)) - counters.add(cc_2) - states = [] - final_update = None - symbol = pyxb.binding.content.ElementUse(ReagentKitType._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - final_update = None - symbol = pyxb.binding.content.ElementUse(ReagentKitType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Reagents')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 100, 10)) - st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_1) - final_update = None - symbol = pyxb.binding.content.ElementUse(ReagentKitType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'ReagentTubes')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 107, 10)) - st_2 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_2) - final_update = None - symbol = pyxb.binding.content.ElementUse(ReagentKitType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'ReagentPlateRows')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 114, 10)) - st_3 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_3) - final_update = set() - symbol = pyxb.binding.content.ElementUse(ReagentKitType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'ChemistryConfigs')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 121, 10)) - st_4 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_4) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_1, False)) - symbol = pyxb.binding.content.ElementUse(ReagentKitType._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'Defaults')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 128, 10)) - st_5 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_5) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_2, False)) - symbol = pyxb.binding.content.ElementUse(ReagentKitType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'Automations')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 129, 10)) - st_6 = fac.State(symbol, is_initial=False, final_update=final_update, is_unordered_catenation=False) - states.append(st_6) - transitions = [] - transitions.append(fac.Transition(st_0, [ - fac.UpdateInstruction(cc_0, True) ])) - transitions.append(fac.Transition(st_1, [ - fac.UpdateInstruction(cc_0, False) ])) - st_0._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_2, [ - ])) - st_1._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_3, [ - ])) - st_2._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_4, [ - ])) - st_3._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_5, [ - ])) - transitions.append(fac.Transition(st_6, [ - ])) - st_4._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_5, [ - fac.UpdateInstruction(cc_1, True) ])) - transitions.append(fac.Transition(st_6, [ - fac.UpdateInstruction(cc_1, False) ])) - st_5._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_6, [ - fac.UpdateInstruction(cc_2, True) ])) - st_6._set_transitionSet(transitions) - return fac.Automaton(states, counters, False, containing_state=None) -ReagentKitType._Automaton = _BuildAutomaton_7() - - - - -def _BuildAutomaton_8 (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_8 - del _BuildAutomaton_8 - import pyxb.utils.fac as fac - - counters = set() - cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - counters.add(cc_0) - states = [] - final_update = set() - final_update.add(fac.UpdateInstruction(cc_0, False)) - symbol = pyxb.binding.content.ElementUse(ReagentTubeType._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - transitions = [] - transitions.append(fac.Transition(st_0, [ - fac.UpdateInstruction(cc_0, True) ])) - st_0._set_transitionSet(transitions) - return fac.Automaton(states, counters, True, containing_state=None) -ReagentTubeType._Automaton = _BuildAutomaton_8() - - - - -def _BuildAutomaton_9 (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_9 - del _BuildAutomaton_9 - import pyxb.utils.fac as fac - - counters = set() - cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - counters.add(cc_0) - states = [] - final_update = set() - final_update.add(fac.UpdateInstruction(cc_0, False)) - symbol = pyxb.binding.content.ElementUse(ReagentPlateRowType._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - transitions = [] - transitions.append(fac.Transition(st_0, [ - fac.UpdateInstruction(cc_0, True) ])) - st_0._set_transitionSet(transitions) - return fac.Automaton(states, counters, True, containing_state=None) -ReagentPlateRowType._Automaton = _BuildAutomaton_9() - - - - -SupplyKitSequencing._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ReagentAutomationName'), pyxb.binding.datatypes.string, scope=SupplyKitSequencing, documentation='The reagent-mixing protocol used. ', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 28, 10))) - -SupplyKitSequencing._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'ReagentTubes'), SupplyKitSequencing, scope=SupplyKitSequencing, documentation="Tubes associated with the reagent kit - can have up to two; don't forget to set the location, 0 or 1", location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 33, 10))) - -SupplyKitSequencing._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'SequencingChemistry'), _ImportedBinding__pbbase.SequencingChemistry, scope=SupplyKitSequencing, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 38, 10))) - -SupplyKitSequencing._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'SequencingKitDefinition'), ReagentKitType, scope=SupplyKitSequencing, location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 39, 10))) - -def _BuildAutomaton_10 (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_10 - del _BuildAutomaton_10 - import pyxb.utils.fac as fac - - counters = set() - cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - counters.add(cc_0) - cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 206, 10)) - counters.add(cc_1) - cc_2 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 457, 10)) - counters.add(cc_2) - cc_3 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 28, 10)) - counters.add(cc_3) - cc_4 = fac.CounterCondition(min=0, max=2, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 33, 10)) - counters.add(cc_4) - cc_5 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 38, 10)) - counters.add(cc_5) - cc_6 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 39, 10)) - counters.add(cc_6) - states = [] - final_update = set() - final_update.add(fac.UpdateInstruction(cc_0, False)) - symbol = pyxb.binding.content.ElementUse(SupplyKitSequencing._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_1, False)) - symbol = pyxb.binding.content.ElementUse(SupplyKitSequencing._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'CheckSum')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 206, 10)) - st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_1) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_2, False)) - symbol = pyxb.binding.content.ElementUse(SupplyKitSequencing._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'Defaults')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 457, 10)) - st_2 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_2) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_3, False)) - symbol = pyxb.binding.content.ElementUse(SupplyKitSequencing._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'ReagentAutomationName')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 28, 10)) - st_3 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_3) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_4, False)) - symbol = pyxb.binding.content.ElementUse(SupplyKitSequencing._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'ReagentTubes')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 33, 10)) - st_4 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_4) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_5, False)) - symbol = pyxb.binding.content.ElementUse(SupplyKitSequencing._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'SequencingChemistry')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 38, 10)) - st_5 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_5) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_6, False)) - symbol = pyxb.binding.content.ElementUse(SupplyKitSequencing._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'SequencingKitDefinition')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioReagentKit.xsd', 39, 10)) - st_6 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_6) - transitions = [] - transitions.append(fac.Transition(st_0, [ - fac.UpdateInstruction(cc_0, True) ])) - transitions.append(fac.Transition(st_1, [ - fac.UpdateInstruction(cc_0, False) ])) - transitions.append(fac.Transition(st_2, [ - fac.UpdateInstruction(cc_0, False) ])) - transitions.append(fac.Transition(st_3, [ - fac.UpdateInstruction(cc_0, False) ])) - transitions.append(fac.Transition(st_4, [ - fac.UpdateInstruction(cc_0, False) ])) - transitions.append(fac.Transition(st_5, [ - fac.UpdateInstruction(cc_0, False) ])) - transitions.append(fac.Transition(st_6, [ - fac.UpdateInstruction(cc_0, False) ])) - st_0._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_1, [ - fac.UpdateInstruction(cc_1, True) ])) - transitions.append(fac.Transition(st_2, [ - fac.UpdateInstruction(cc_1, False) ])) - transitions.append(fac.Transition(st_3, [ - fac.UpdateInstruction(cc_1, False) ])) - transitions.append(fac.Transition(st_4, [ - fac.UpdateInstruction(cc_1, False) ])) - transitions.append(fac.Transition(st_5, [ - fac.UpdateInstruction(cc_1, False) ])) - transitions.append(fac.Transition(st_6, [ - fac.UpdateInstruction(cc_1, False) ])) - st_1._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_2, [ - fac.UpdateInstruction(cc_2, True) ])) - transitions.append(fac.Transition(st_3, [ - fac.UpdateInstruction(cc_2, False) ])) - transitions.append(fac.Transition(st_4, [ - fac.UpdateInstruction(cc_2, False) ])) - transitions.append(fac.Transition(st_5, [ - fac.UpdateInstruction(cc_2, False) ])) - transitions.append(fac.Transition(st_6, [ - fac.UpdateInstruction(cc_2, False) ])) - st_2._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_3, [ - fac.UpdateInstruction(cc_3, True) ])) - transitions.append(fac.Transition(st_4, [ - fac.UpdateInstruction(cc_3, False) ])) - transitions.append(fac.Transition(st_5, [ - fac.UpdateInstruction(cc_3, False) ])) - transitions.append(fac.Transition(st_6, [ - fac.UpdateInstruction(cc_3, False) ])) - st_3._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_4, [ - fac.UpdateInstruction(cc_4, True) ])) - transitions.append(fac.Transition(st_5, [ - fac.UpdateInstruction(cc_4, False) ])) - transitions.append(fac.Transition(st_6, [ - fac.UpdateInstruction(cc_4, False) ])) - st_4._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_5, [ - fac.UpdateInstruction(cc_5, True) ])) - transitions.append(fac.Transition(st_6, [ - fac.UpdateInstruction(cc_5, False) ])) - st_5._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_6, [ - fac.UpdateInstruction(cc_6, True) ])) - st_6._set_transitionSet(transitions) - return fac.Automaton(states, counters, True, containing_state=None) -SupplyKitSequencing._Automaton = _BuildAutomaton_10() - --- a/pbcore/io/dataset/pyxb/_pbsample.py +++ /dev/null @@ -1,544 +0,0 @@ -# pbcore/io/dataset/pyxb/_pbsample.py -# -*- coding: utf-8 -*- -# PyXB bindings for NM:a7c0866985dba806fe3112e9fbc4707c9f978443 -# Generated 2020-05-05 09:21:48.249872 by PyXB version 1.2.6 using Python 3.7.3.final.0 -# Namespace http://pacificbiosciences.com/PacBioSampleInfo.xsd [xmlns:pbsample] - -from __future__ import unicode_literals -import pyxb -import pyxb.binding -import pyxb.binding.saxer -import io -import pyxb.utils.utility -import pyxb.utils.domutils -import sys -import pyxb.utils.six as _six -# Unique identifier for bindings created at the same time -_GenerationUID = pyxb.utils.utility.UniqueIdentifier('urn:uuid:84ba9ef6-8eec-11ea-9839-005056871a22') - -# Version of PyXB used to generate the bindings -_PyXBVersion = '1.2.6' -# Generated bindings are not compatible across PyXB versions -if pyxb.__version__ != _PyXBVersion: - raise pyxb.PyXBVersionError(_PyXBVersion) - -# A holder for module-level binding classes so we can access them from -# inside class definitions where property names may conflict. -_module_typeBindings = pyxb.utils.utility.Object() - -# Import bindings for namespaces imported into schema -import pyxb.binding.datatypes -import _pbbase as _ImportedBinding__pbbase - -# NOTE: All namespace declarations are reserved within the binding -Namespace = pyxb.namespace.NamespaceForURI('http://pacificbiosciences.com/PacBioSampleInfo.xsd', create_if_missing=True) -Namespace.configureCategories(['typeBinding', 'elementBinding']) -_Namespace_pbbase = _ImportedBinding__pbbase.Namespace -_Namespace_pbbase.configureCategories(['typeBinding', 'elementBinding']) - -def CreateFromDocument (xml_text, default_namespace=None, location_base=None): - """Parse the given XML and use the document element to create a - Python instance. - - @param xml_text An XML document. This should be data (Python 2 - str or Python 3 bytes), or a text (Python 2 unicode or Python 3 - str) in the L{pyxb._InputEncoding} encoding. - - @keyword default_namespace The L{pyxb.Namespace} instance to use as the - default namespace where there is no default namespace in scope. - If unspecified or C{None}, the namespace of the module containing - this function will be used. - - @keyword location_base: An object to be recorded as the base of all - L{pyxb.utils.utility.Location} instances associated with events and - objects handled by the parser. You might pass the URI from which - the document was obtained. - """ - - if pyxb.XMLStyle_saxer != pyxb._XMLStyle: - dom = pyxb.utils.domutils.StringToDOM(xml_text) - return CreateFromDOM(dom.documentElement, default_namespace=default_namespace) - if default_namespace is None: - default_namespace = Namespace.fallbackNamespace() - saxer = pyxb.binding.saxer.make_parser(fallback_namespace=default_namespace, location_base=location_base) - handler = saxer.getContentHandler() - xmld = xml_text - if isinstance(xmld, _six.text_type): - xmld = xmld.encode(pyxb._InputEncoding) - saxer.parse(io.BytesIO(xmld)) - instance = handler.rootObject() - return instance - -def CreateFromDOM (node, default_namespace=None): - """Create a Python instance from the given DOM node. - The node tag must correspond to an element declaration in this module. - - @deprecated: Forcing use of DOM interface is unnecessary; use L{CreateFromDocument}.""" - if default_namespace is None: - default_namespace = Namespace.fallbackNamespace() - return pyxb.binding.basis.element.AnyCreateFromDOM(node, default_namespace) - - -# Complex type [anonymous] with content type ELEMENT_ONLY -class CTD_ANON (pyxb.binding.basis.complexTypeDefinition): - """Back references to other BarcodedSampleType object UniqueIds which utilize this sample""" - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = None - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioSampleInfo.xsd', 96, 4) - _ElementMap = {} - _AttributeMap = {} - # Base type is pyxb.binding.datatypes.anyType - - # Element {http://pacificbiosciences.com/PacBioSampleInfo.xsd}BioSamplePointer uses Python identifier BioSamplePointer - __BioSamplePointer = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'BioSamplePointer'), 'BioSamplePointer', '__httppacificbiosciences_comPacBioSampleInfo_xsd_CTD_ANON_httppacificbiosciences_comPacBioSampleInfo_xsdBioSamplePointer', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioSampleInfo.xsd', 103, 10), ) - - - BioSamplePointer = property(__BioSamplePointer.value, __BioSamplePointer.set, None, 'Pointer to a single biological sample') - - - # Element {http://pacificbiosciences.com/PacBioSampleInfo.xsd}BarcodedSamplePointers uses Python identifier BarcodedSamplePointers - __BarcodedSamplePointers = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'BarcodedSamplePointers'), 'BarcodedSamplePointers', '__httppacificbiosciences_comPacBioSampleInfo_xsd_CTD_ANON_httppacificbiosciences_comPacBioSampleInfo_xsdBarcodedSamplePointers', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioSampleInfo.xsd', 112, 2), ) - - - BarcodedSamplePointers = property(__BarcodedSamplePointers.value, __BarcodedSamplePointers.set, None, 'Back references to other BarcodedSampleType object UniqueIds which utilize this sample') - - _ElementMap.update({ - __BioSamplePointer.name() : __BioSamplePointer, - __BarcodedSamplePointers.name() : __BarcodedSamplePointers - }) - _AttributeMap.update({ - - }) -_module_typeBindings.CTD_ANON = CTD_ANON - - -# Complex type [anonymous] with content type ELEMENT_ONLY -class CTD_ANON_ (pyxb.binding.basis.complexTypeDefinition): - """Back references to other BarcodedSampleType object UniqueIds which utilize this sample""" - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = None - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioSampleInfo.xsd', 116, 4) - _ElementMap = {} - _AttributeMap = {} - # Base type is pyxb.binding.datatypes.anyType - - # Element {http://pacificbiosciences.com/PacBioSampleInfo.xsd}BarcodedSamplePointer uses Python identifier BarcodedSamplePointer - __BarcodedSamplePointer = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'BarcodedSamplePointer'), 'BarcodedSamplePointer', '__httppacificbiosciences_comPacBioSampleInfo_xsd_CTD_ANON__httppacificbiosciences_comPacBioSampleInfo_xsdBarcodedSamplePointer', True, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioSampleInfo.xsd', 118, 8), ) - - - BarcodedSamplePointer = property(__BarcodedSamplePointer.value, __BarcodedSamplePointer.set, None, 'Pointer to a group of barcoded samples') - - _ElementMap.update({ - __BarcodedSamplePointer.name() : __BarcodedSamplePointer - }) - _AttributeMap.update({ - - }) -_module_typeBindings.CTD_ANON_ = CTD_ANON_ - - -# Complex type [anonymous] with content type ELEMENT_ONLY -class CTD_ANON_2 (pyxb.binding.basis.complexTypeDefinition): - """List of biological samples.""" - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = None - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioSampleInfo.xsd', 130, 4) - _ElementMap = {} - _AttributeMap = {} - # Base type is pyxb.binding.datatypes.anyType - - # Element {http://pacificbiosciences.com/PacBioSampleInfo.xsd}BioSample uses Python identifier BioSample - __BioSample = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'BioSample'), 'BioSample', '__httppacificbiosciences_comPacBioSampleInfo_xsd_CTD_ANON_2_httppacificbiosciences_comPacBioSampleInfo_xsdBioSample', True, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioSampleInfo.xsd', 136, 2), ) - - - BioSample = property(__BioSample.value, __BioSample.set, None, 'An individual biological sample.') - - _ElementMap.update({ - __BioSample.name() : __BioSample - }) - _AttributeMap.update({ - - }) -_module_typeBindings.CTD_ANON_2 = CTD_ANON_2 - - -# Complex type {http://pacificbiosciences.com/PacBioSampleInfo.xsd}BioSampleType with content type ELEMENT_ONLY -class BioSampleType (_ImportedBinding__pbbase.BaseEntityType): - """The actual biological sample; this could be prep'd, or in original form; could be bound, or annealed...""" - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = pyxb.namespace.ExpandedName(Namespace, 'BioSampleType') - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioSampleInfo.xsd', 8, 2) - _ElementMap = _ImportedBinding__pbbase.BaseEntityType._ElementMap.copy() - _AttributeMap = _ImportedBinding__pbbase.BaseEntityType._AttributeMap.copy() - # Base type is _ImportedBinding__pbbase.BaseEntityType - - # Element Extensions ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Extensions) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Element {http://pacificbiosciences.com/PacBioSampleInfo.xsd}DNABarcodes uses Python identifier DNABarcodes - __DNABarcodes = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'DNABarcodes'), 'DNABarcodes', '__httppacificbiosciences_comPacBioSampleInfo_xsd_BioSampleType_httppacificbiosciences_comPacBioSampleInfo_xsdDNABarcodes', False, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioSampleInfo.xsd', 15, 10), ) - - - DNABarcodes = property(__DNABarcodes.value, __DNABarcodes.set, None, 'A list of barcodes associated with the biological sample') - - - # Attribute Name inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Description inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Tags inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Format inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ResourceId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Version inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute CreatedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ModifiedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute DateReceived uses Python identifier DateReceived - __DateReceived = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'DateReceived'), 'DateReceived', '__httppacificbiosciences_comPacBioSampleInfo_xsd_BioSampleType_DateReceived', pyxb.binding.datatypes.dateTime) - __DateReceived._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioSampleInfo.xsd', 34, 8) - __DateReceived._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioSampleInfo.xsd', 34, 8) - - DateReceived = property(__DateReceived.value, __DateReceived.set, None, 'Date the sample was received by the lab') - - - # Attribute Organism uses Python identifier Organism - __Organism = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'Organism'), 'Organism', '__httppacificbiosciences_comPacBioSampleInfo_xsd_BioSampleType_Organism', pyxb.binding.datatypes.string) - __Organism._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioSampleInfo.xsd', 39, 8) - __Organism._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioSampleInfo.xsd', 39, 8) - - Organism = property(__Organism.value, __Organism.set, None, 'e.g. HIV, E.coli') - - - # Attribute Reference uses Python identifier Reference - __Reference = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'Reference'), 'Reference', '__httppacificbiosciences_comPacBioSampleInfo_xsd_BioSampleType_Reference', pyxb.binding.datatypes.string) - __Reference._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioSampleInfo.xsd', 44, 8) - __Reference._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioSampleInfo.xsd', 44, 8) - - Reference = property(__Reference.value, __Reference.set, None, 'Name of reference, or pointer to one at e.g. NCBI RefSeq') - - - # Attribute DNAType uses Python identifier DNAType - __DNAType = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'DNAType'), 'DNAType', '__httppacificbiosciences_comPacBioSampleInfo_xsd_BioSampleType_DNAType', pyxb.binding.datatypes.string) - __DNAType._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioSampleInfo.xsd', 49, 8) - __DNAType._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioSampleInfo.xsd', 49, 8) - - DNAType = property(__DNAType.value, __DNAType.set, None, 'shotgun library, amplicon, etc.') - - - # Attribute Concentration uses Python identifier Concentration - __Concentration = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'Concentration'), 'Concentration', '__httppacificbiosciences_comPacBioSampleInfo_xsd_BioSampleType_Concentration', pyxb.binding.datatypes.float) - __Concentration._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioSampleInfo.xsd', 54, 8) - __Concentration._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioSampleInfo.xsd', 54, 8) - - Concentration = property(__Concentration.value, __Concentration.set, None, 'in ng/uL, e.g. 250') - - - # Attribute QuantificationMethod uses Python identifier QuantificationMethod - __QuantificationMethod = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'QuantificationMethod'), 'QuantificationMethod', '__httppacificbiosciences_comPacBioSampleInfo_xsd_BioSampleType_QuantificationMethod', pyxb.binding.datatypes.string) - __QuantificationMethod._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioSampleInfo.xsd', 59, 8) - __QuantificationMethod._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioSampleInfo.xsd', 59, 8) - - QuantificationMethod = property(__QuantificationMethod.value, __QuantificationMethod.set, None, 'e.g. Qubit') - - - # Attribute SMRTBellConcentration uses Python identifier SMRTBellConcentration - __SMRTBellConcentration = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'SMRTBellConcentration'), 'SMRTBellConcentration', '__httppacificbiosciences_comPacBioSampleInfo_xsd_BioSampleType_SMRTBellConcentration', pyxb.binding.datatypes.float) - __SMRTBellConcentration._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioSampleInfo.xsd', 64, 8) - __SMRTBellConcentration._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioSampleInfo.xsd', 64, 8) - - SMRTBellConcentration = property(__SMRTBellConcentration.value, __SMRTBellConcentration.set, None, 'in ng/uL, e.g. 4.5') - - - # Attribute SMRTBellQuantificationMethod uses Python identifier SMRTBellQuantificationMethod - __SMRTBellQuantificationMethod = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'SMRTBellQuantificationMethod'), 'SMRTBellQuantificationMethod', '__httppacificbiosciences_comPacBioSampleInfo_xsd_BioSampleType_SMRTBellQuantificationMethod', pyxb.binding.datatypes.string) - __SMRTBellQuantificationMethod._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioSampleInfo.xsd', 69, 8) - __SMRTBellQuantificationMethod._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioSampleInfo.xsd', 69, 8) - - SMRTBellQuantificationMethod = property(__SMRTBellQuantificationMethod.value, __SMRTBellQuantificationMethod.set, None, 'e.g. Qubit') - - - # Attribute BufferName uses Python identifier BufferName - __BufferName = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'BufferName'), 'BufferName', '__httppacificbiosciences_comPacBioSampleInfo_xsd_BioSampleType_BufferName', pyxb.binding.datatypes.string) - __BufferName._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioSampleInfo.xsd', 74, 8) - __BufferName._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioSampleInfo.xsd', 74, 8) - - BufferName = property(__BufferName.value, __BufferName.set, None, 'e.g. Tris HCl') - - - # Attribute SamplePrepKit uses Python identifier SamplePrepKit - __SamplePrepKit = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'SamplePrepKit'), 'SamplePrepKit', '__httppacificbiosciences_comPacBioSampleInfo_xsd_BioSampleType_SamplePrepKit', pyxb.binding.datatypes.string) - __SamplePrepKit._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioSampleInfo.xsd', 79, 8) - __SamplePrepKit._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioSampleInfo.xsd', 79, 8) - - SamplePrepKit = property(__SamplePrepKit.value, __SamplePrepKit.set, None, 'e.g. SMRTbell Template Prep Kit') - - - # Attribute TargetLibrarySize uses Python identifier TargetLibrarySize - __TargetLibrarySize = pyxb.binding.content.AttributeUse(pyxb.namespace.ExpandedName(None, 'TargetLibrarySize'), 'TargetLibrarySize', '__httppacificbiosciences_comPacBioSampleInfo_xsd_BioSampleType_TargetLibrarySize', pyxb.binding.datatypes.string) - __TargetLibrarySize._DeclarationLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioSampleInfo.xsd', 84, 8) - __TargetLibrarySize._UseLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioSampleInfo.xsd', 84, 8) - - TargetLibrarySize = property(__TargetLibrarySize.value, __TargetLibrarySize.set, None, '2000, 10000, 20000') - - _ElementMap.update({ - __DNABarcodes.name() : __DNABarcodes - }) - _AttributeMap.update({ - __DateReceived.name() : __DateReceived, - __Organism.name() : __Organism, - __Reference.name() : __Reference, - __DNAType.name() : __DNAType, - __Concentration.name() : __Concentration, - __QuantificationMethod.name() : __QuantificationMethod, - __SMRTBellConcentration.name() : __SMRTBellConcentration, - __SMRTBellQuantificationMethod.name() : __SMRTBellQuantificationMethod, - __BufferName.name() : __BufferName, - __SamplePrepKit.name() : __SamplePrepKit, - __TargetLibrarySize.name() : __TargetLibrarySize - }) -_module_typeBindings.BioSampleType = BioSampleType -Namespace.addCategoryObject('typeBinding', 'BioSampleType', BioSampleType) - - -# Complex type [anonymous] with content type ELEMENT_ONLY -class CTD_ANON_3 (_ImportedBinding__pbbase.BaseEntityType): - """A list of barcodes associated with the biological sample""" - _TypeDefinition = None - _ContentTypeTag = pyxb.binding.basis.complexTypeDefinition._CT_ELEMENT_ONLY - _Abstract = False - _ExpandedName = None - _XSDLocation = pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioSampleInfo.xsd', 19, 12) - _ElementMap = _ImportedBinding__pbbase.BaseEntityType._ElementMap.copy() - _AttributeMap = _ImportedBinding__pbbase.BaseEntityType._AttributeMap.copy() - # Base type is _ImportedBinding__pbbase.BaseEntityType - - # Element Extensions ({http://pacificbiosciences.com/PacBioBaseDataModel.xsd}Extensions) inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Element {http://pacificbiosciences.com/PacBioSampleInfo.xsd}DNABarcode uses Python identifier DNABarcode - __DNABarcode = pyxb.binding.content.ElementDeclaration(pyxb.namespace.ExpandedName(Namespace, 'DNABarcode'), 'DNABarcode', '__httppacificbiosciences_comPacBioSampleInfo_xsd_CTD_ANON_3_httppacificbiosciences_comPacBioSampleInfo_xsdDNABarcode', True, pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioSampleInfo.xsd', 23, 20), ) - - - DNABarcode = property(__DNABarcode.value, __DNABarcode.set, None, 'A sequence of barcodes associated with the biological sample') - - - # Attribute Name inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Description inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Tags inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Format inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ResourceId inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute Version inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute CreatedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - - # Attribute ModifiedAt inherited from {http://pacificbiosciences.com/PacBioBaseDataModel.xsd}BaseEntityType - _ElementMap.update({ - __DNABarcode.name() : __DNABarcode - }) - _AttributeMap.update({ - - }) -_module_typeBindings.CTD_ANON_3 = CTD_ANON_3 - - -BioSamplePointers = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'BioSamplePointers'), CTD_ANON, documentation='Back references to other BarcodedSampleType object UniqueIds which utilize this sample', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioSampleInfo.xsd', 92, 2)) -Namespace.addCategoryObject('elementBinding', BioSamplePointers.name().localName(), BioSamplePointers) - -BarcodedSamplePointers = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'BarcodedSamplePointers'), CTD_ANON_, documentation='Back references to other BarcodedSampleType object UniqueIds which utilize this sample', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioSampleInfo.xsd', 112, 2)) -Namespace.addCategoryObject('elementBinding', BarcodedSamplePointers.name().localName(), BarcodedSamplePointers) - -BioSamples = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'BioSamples'), CTD_ANON_2, documentation='List of biological samples.', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioSampleInfo.xsd', 126, 2)) -Namespace.addCategoryObject('elementBinding', BioSamples.name().localName(), BioSamples) - -BioSample = pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'BioSample'), BioSampleType, documentation='An individual biological sample.', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioSampleInfo.xsd', 136, 2)) -Namespace.addCategoryObject('elementBinding', BioSample.name().localName(), BioSample) - - - -CTD_ANON._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'BioSamplePointer'), pyxb.binding.datatypes.IDREF, scope=CTD_ANON, documentation='Pointer to a single biological sample', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioSampleInfo.xsd', 103, 10))) - -CTD_ANON._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'BarcodedSamplePointers'), CTD_ANON_, scope=CTD_ANON, documentation='Back references to other BarcodedSampleType object UniqueIds which utilize this sample', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioSampleInfo.xsd', 112, 2))) - -def _BuildAutomaton (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton - del _BuildAutomaton - import pyxb.utils.fac as fac - - counters = set() - states = [] - final_update = set() - symbol = pyxb.binding.content.ElementUse(CTD_ANON._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'BarcodedSamplePointers')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioSampleInfo.xsd', 102, 10)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - final_update = set() - symbol = pyxb.binding.content.ElementUse(CTD_ANON._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'BioSamplePointer')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioSampleInfo.xsd', 103, 10)) - st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_1) - transitions = [] - st_0._set_transitionSet(transitions) - transitions = [] - st_1._set_transitionSet(transitions) - return fac.Automaton(states, counters, False, containing_state=None) -CTD_ANON._Automaton = _BuildAutomaton() - - - - -CTD_ANON_._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'BarcodedSamplePointer'), pyxb.binding.datatypes.IDREF, scope=CTD_ANON_, documentation='Pointer to a group of barcoded samples', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioSampleInfo.xsd', 118, 8))) - -def _BuildAutomaton_ (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_ - del _BuildAutomaton_ - import pyxb.utils.fac as fac - - counters = set() - states = [] - final_update = set() - symbol = pyxb.binding.content.ElementUse(CTD_ANON_._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'BarcodedSamplePointer')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioSampleInfo.xsd', 118, 8)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - transitions = [] - transitions.append(fac.Transition(st_0, [ - ])) - st_0._set_transitionSet(transitions) - return fac.Automaton(states, counters, False, containing_state=None) -CTD_ANON_._Automaton = _BuildAutomaton_() - - - - -CTD_ANON_2._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'BioSample'), BioSampleType, scope=CTD_ANON_2, documentation='An individual biological sample.', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioSampleInfo.xsd', 136, 2))) - -def _BuildAutomaton_2 (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_2 - del _BuildAutomaton_2 - import pyxb.utils.fac as fac - - counters = set() - states = [] - final_update = set() - symbol = pyxb.binding.content.ElementUse(CTD_ANON_2._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'BioSample')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioSampleInfo.xsd', 132, 8)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - transitions = [] - transitions.append(fac.Transition(st_0, [ - ])) - st_0._set_transitionSet(transitions) - return fac.Automaton(states, counters, False, containing_state=None) -CTD_ANON_2._Automaton = _BuildAutomaton_2() - - - - -BioSampleType._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'DNABarcodes'), CTD_ANON_3, scope=BioSampleType, documentation='A list of barcodes associated with the biological sample', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioSampleInfo.xsd', 15, 10))) - -def _BuildAutomaton_3 (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_3 - del _BuildAutomaton_3 - import pyxb.utils.fac as fac - - counters = set() - cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - counters.add(cc_0) - cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioSampleInfo.xsd', 15, 10)) - counters.add(cc_1) - states = [] - final_update = set() - final_update.add(fac.UpdateInstruction(cc_0, False)) - symbol = pyxb.binding.content.ElementUse(BioSampleType._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_1, False)) - symbol = pyxb.binding.content.ElementUse(BioSampleType._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DNABarcodes')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioSampleInfo.xsd', 15, 10)) - st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_1) - transitions = [] - transitions.append(fac.Transition(st_0, [ - fac.UpdateInstruction(cc_0, True) ])) - transitions.append(fac.Transition(st_1, [ - fac.UpdateInstruction(cc_0, False) ])) - st_0._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_1, [ - fac.UpdateInstruction(cc_1, True) ])) - st_1._set_transitionSet(transitions) - return fac.Automaton(states, counters, True, containing_state=None) -BioSampleType._Automaton = _BuildAutomaton_3() - - - - -CTD_ANON_3._AddElement(pyxb.binding.basis.element(pyxb.namespace.ExpandedName(Namespace, 'DNABarcode'), _ImportedBinding__pbbase.DNABarcode, scope=CTD_ANON_3, documentation='A sequence of barcodes associated with the biological sample', location=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioSampleInfo.xsd', 23, 20))) - -def _BuildAutomaton_4 (): - # Remove this helper function from the namespace after it is invoked - global _BuildAutomaton_4 - del _BuildAutomaton_4 - import pyxb.utils.fac as fac - - counters = set() - cc_0 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioSampleInfo.xsd', 19, 12)) - counters.add(cc_0) - cc_1 = fac.CounterCondition(min=0, max=1, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - counters.add(cc_1) - cc_2 = fac.CounterCondition(min=0, max=None, metadata=pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioSampleInfo.xsd', 23, 20)) - counters.add(cc_2) - states = [] - final_update = set() - final_update.add(fac.UpdateInstruction(cc_0, False)) - final_update.add(fac.UpdateInstruction(cc_1, False)) - symbol = pyxb.binding.content.ElementUse(CTD_ANON_3._UseForTag(pyxb.namespace.ExpandedName(_Namespace_pbbase, 'Extensions')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioBaseDataModel.xsd', 98, 6)) - st_0 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_0) - final_update = set() - final_update.add(fac.UpdateInstruction(cc_0, False)) - final_update.add(fac.UpdateInstruction(cc_2, False)) - symbol = pyxb.binding.content.ElementUse(CTD_ANON_3._UseForTag(pyxb.namespace.ExpandedName(Namespace, 'DNABarcode')), pyxb.utils.utility.Location('/tmp/tmpqwf3af3mxsds/PacBioSampleInfo.xsd', 23, 20)) - st_1 = fac.State(symbol, is_initial=True, final_update=final_update, is_unordered_catenation=False) - states.append(st_1) - transitions = [] - transitions.append(fac.Transition(st_0, [ - fac.UpdateInstruction(cc_0, True), - fac.UpdateInstruction(cc_1, False) ])) - transitions.append(fac.Transition(st_0, [ - fac.UpdateInstruction(cc_1, True) ])) - transitions.append(fac.Transition(st_1, [ - fac.UpdateInstruction(cc_0, True), - fac.UpdateInstruction(cc_1, False) ])) - transitions.append(fac.Transition(st_1, [ - fac.UpdateInstruction(cc_1, False) ])) - st_0._set_transitionSet(transitions) - transitions = [] - transitions.append(fac.Transition(st_0, [ - fac.UpdateInstruction(cc_0, True), - fac.UpdateInstruction(cc_2, False) ])) - transitions.append(fac.Transition(st_1, [ - fac.UpdateInstruction(cc_0, True), - fac.UpdateInstruction(cc_2, False) ])) - transitions.append(fac.Transition(st_1, [ - fac.UpdateInstruction(cc_2, True) ])) - st_1._set_transitionSet(transitions) - return fac.Automaton(states, counters, True, containing_state=None) -CTD_ANON_3._Automaton = _BuildAutomaton_4() - --- a/setup.py +++ b/setup.py @@ -9,13 +9,13 @@ test_deps = [ 'pytest', 'pytest-cov', 'pytest-xdist', - 'pyxb == 1.2.6', 'sphinx', + 'xmlschema' ] setup( name='pbcore', - version='2.1.2', + version='2.2.0', author='Pacific Biosciences', author_email='devnet@pacificbiosciences.com', description='A Python library for reading and writing PacBio® data files',