Description: Attempt skipping failing test on 32-bit
Author: Nilesh Patra <nilesh@debian.org>
Bug: https://github.com/pysam-developers/pysam/issues/1367
Reviewed-By: Étienne Mollier <emollier@debian.org>
Last-Update: 2025-11-14
---
--- python-pysam.orig/tests/samtools_test.py
+++ python-pysam/tests/samtools_test.py
@@ -20,6 +20,7 @@
     check_samtools_view_equal, get_temp_filename, force_bytes, WORKDIR, \
     make_data_files, BAM_DATADIR
 
+import platform
 
 def setUpModule():
     make_data_files(BAM_DATADIR)
@@ -86,7 +87,7 @@
         # TODO: fixmate behaviour changed in 1.21
         #"fixmate ex1.bam %(out)s_ex1.fixmate.bam",
         "flagstat ex1.bam > %(out)s_ex1.flagstat",
-        "calmd ex1.bam ex1.fa > %(out)s_ex1.calmd.bam",
+        #"calmd ex1.bam ex1.fa > %(out)s_ex1.calmd.bam",
         # use -s option, otherwise the following error in samtools 1.2:
         # Samtools-htslib-API: bam_get_library() not yet implemented
         # causes downstream problems
@@ -112,6 +113,9 @@
         # ("addreplacerg -r 'RG\tID:ga\tSM:hs' ex1.bam > %(out)s_ex1.addreplacerg",
     ]
 
+    if platform.architecture()[0] == '64bit':
+        statements.append("calmd ex1.bam ex1.fa > %(out)s_ex1.calmd.bam")
+
     map_command = {
     }
 
--- python-pysam.orig/tests/compile_test.py
+++ python-pysam/tests/compile_test.py
@@ -8,6 +8,7 @@
 
 # clean up previous compilation
 import os
+import platform
 import pytest
 import pysam
 from TestUtils import make_data_files, BAM_DATADIR, CBCF_DATADIR, TABIX_DATADIR
@@ -53,6 +54,10 @@
     assert nread == 237
 
 
+@pytest.mark.skipif(
+    platform.architecture()[0] != '64bit',
+    reason="64-bit specific tests"
+)
 class TestBinaryCompatibility:
     def test_alignments(self):
         fp = pysam.AlignmentFile(os.path.join(BAM_DATADIR, "ex1.bam"))