Index of /data/main/q/qiime/1.4.0-2/scripts

• Parent Directory
• add_taxa.py
• adjust_seq_orientation.py
• align_seqs.py
• alpha_diversity.py
• alpha_rarefaction.py
• ampliconnoise.py
• assign_taxonomy.py
• beta_diversity.py
• beta_diversity_through_3d_plots.py
• beta_diversity_through_plots.py
• beta_significance.py
• blast_wrapper.py
• categorized_dist_scatterplot.py
• check_id_map.py
• cluster_quality.py
• collate_alpha.py
• compare_3d_plots.py
• compare_alpha_diversity.py
• compare_distance_matrices.py
• consensus_tree.py
• convert_otu_table_to_unifrac_sample_mapping.py
• convert_unifrac_sample_mapping_to_otu_table.py
• core_qiime_analyses.py
• count_seqs.py
• denoise_wrapper.py
• denoiser.py
• denoiser_preprocess.py
• denoiser_worker.py
• dissimilarity_mtx_stats.py
• distance_matrix_from_mapping.py
• ec2Clean
• ec2Dispatch
• exclude_seqs_by_blast.py
• extract_seqs_by_sample_id.py
• filter_alignment.py
• filter_by_metadata.py
• filter_distance_matrix.py
• filter_fasta.py
• filter_otu_table.py
• filter_otus_by_sample.py
• filter_tree.py
• fix_arb_fasta.py
• identify_chimeric_seqs.py
• identify_missing_files.py
• inflate_denoiser_output.py
• jackknifed_beta_diversity.py
• make_2d_plots.py
• make_3d_plots.py
• make_bootstrapped_tree.py
• make_distance_boxplots.py
• make_distance_comparison_plots.py
• make_distance_histograms.py
• make_fastq.py
• make_library_id_lists.py
• make_otu_heatmap.py
• make_otu_heatmap_html.py
• make_otu_network.py
• make_otu_table.py
• make_per_library_sff.py
• make_phylogeny.py
• make_prefs_file.py
• make_qiime_py_file.py
• make_qiime_rst_file.py
• make_rarefaction_plots.py
• make_tep.py
• merge_mapping_files.py
• merge_otu_maps.py
• merge_otu_tables.py
• multiple_rarefactions.py
• multiple_rarefactions_even_depth.py
• neighbor_joining.py
• nmds.py
• otu_category_significance.py
• parallel_align_seqs_pynast.py
• parallel_alpha_diversity.py
• parallel_assign_taxonomy_blast.py
• parallel_assign_taxonomy_rdp.py
• parallel_beta_diversity.py
• parallel_blast.py
• parallel_identify_chimeric_seqs.py
• parallel_multiple_rarefactions.py
• parallel_pick_otus_blast.py
• parallel_pick_otus_uclust_ref.py
• per_library_stats.py
• pick_otus.py
• pick_otus_through_otu_table.py
• pick_reference_otus_through_otu_table.py
• pick_rep_set.py
• plot_rank_abundance_graph.py
• plot_semivariogram.py
• plot_taxa_summary.py
• poller.py
• poller_example.py
• pool_by_metadata.py
• principal_coordinates.py
• print_qiime_config.py
• process_iseq.py
• process_qseq.py
• process_sff.py
• quality_scores_plot.py
• shared_phylotypes.py
• simsam.py
• single_rarefaction.py
• sort_otu_table.py
• split_fasta_on_sample_ids.py
• split_libraries.py
• split_libraries_fastq.py
• split_libraries_illumina.py
• split_otu_table.py
• split_otu_table_by_taxonomy.py
• start_parallel_jobs.py
• start_parallel_jobs_torque.py
• submit_to_mgrast.py
• subsample_fasta.py
• summarize_otu_by_cat.py
• summarize_taxa.py
• summarize_taxa_through_plots.py
• supervised_learning.py
• transform_coordinate_matrices.py
• tree_compare.py
• trflp_file_to_otu_table.py
• trim_sff_primers.py
• truncate_fasta_qual_files.py
• unweight_fasta.py
• upgma_cluster.py