Saving Your Work
The software provides a number of options available for saving your work.
These are detailed in the following sections.
Saving Everything
The most comprehensive approach for saving your work is available by
selecting the File->Save or File->Save As menu
options. These will save a P3D file with full details about the
reference molecule, pharmacophore (including your changes, if any),
and the contents of your Molecule Evaluation page.
Exporting All Molecules
This command, accessible via the File->Export->All Evaluated Molecules menu
option, allows you to save an SD file containing all of the molecules
currently on the Molecule Evaluation page.
The molecules will be saved without information about 3D structure
or any mappings to the pharmacophore. A single copy of each molecule
will be saved, even if each has multiple mappings.
Exporting Alignments
This command, accessible via the File->Export->Checked Alignments menu
option, allows you to save an SD file containing the aligned 3D
structures that are checked on the Molecule Evaluation page.
If multiple alignments are selected for an individual molecule,
they will all be exported by this command.