if(NOT RDK_USE_BOOST_IOSTREAMS) find_package(ZLIB) set(STANDALONE_ZLIB_LIBRARY ${ZLIB_LIBRARIES}) include_directories(${ZLIB_INCLUDE_DIRS}) add_definitions("-DRDK_USE_STANDALONE_ZLIB") endif(NOT RDK_USE_BOOST_IOSTREAMS) if(RDK_BUILD_MAEPARSER_SUPPORT) set(MAEPARSER_LIB maeparser) set(maesupplier MaeMolSupplier.cpp MaeWriter.cpp) if ("${RDK_MAEPARSER_LIBS}" STREQUAL "") # if we're not building maeparser as part of the RDKit build), then find # the imported package find_package(ZLIB QUIET) find_package(${MAEPARSER_LIB}) else() # if we built maeparser as part of the RDKit build, then we need to use # the headers from the source directory include_directories(${maeparser_INCLUDE_DIRS}) endif() endif() if(RDK_BUILD_CHEMDRAW_SUPPORT) add_definitions("-DRDK_BUILD_CHEMDRAW_SUPPORT") endif() rdkit_library(FileParsers CDXMLParser.cpp Mol2FileParser.cpp MolFileParser.cpp SCSRMolFileParser.cpp MolSGroupParsing.cpp MolSGroupWriting.cpp MolFileStereochem.cpp MolFileWriter.cpp ForwardSDMolSupplier.cpp SDMolSupplier.cpp SDWriter.cpp SmilesMolSupplier.cpp SmilesWriter.cpp TDTMolSupplier.cpp TDTWriter.cpp TplFileParser.cpp TplFileWriter.cpp PDBParser.cpp PDBWriter.cpp CMLWriter.cpp XYZFileWriter.cpp XYZFileParser.cpp ${maesupplier} ProximityBonds.cpp SequenceParsers.cpp SequenceWriters.cpp SVGParser.cpp PNGParser.cpp MultithreadedMolSupplier.cpp MultithreadedSmilesMolSupplier.cpp MultithreadedSDMolSupplier.cpp LINK_LIBRARIES GenericGroups Depictor SmilesParse ChemTransforms GraphMol SubstructMatch ${MAEPARSER_LIB} ${RDK_CHEMDRAW_LIBS} ${STANDALONE_ZLIB_LIBRARY} ) if(STANDALONE_ZLIB_LIBRARY) target_include_directories(FileParsers PRIVATE ${ZLIB_INCLUDE_DIRS}) endif(STANDALONE_ZLIB_LIBRARY) target_compile_definitions(FileParsers PRIVATE RDKIT_FILEPARSERS_BUILD) rdkit_headers(CDXMLParser.h FileParsers.h FileParserUtils.h MolFileStereochem.h FileWriters.h MolSupplier.h MolSupplier.v1API.h MolWriters.h SequenceParsers.h SequenceWriters.h GeneralFileReader.h MultithreadedMolSupplier.h MultithreadedSmilesMolSupplier.h MultithreadedSDMolSupplier.h PNGParser.h DEST GraphMol/FileParsers) rdkit_test(fileParsersTest1 test1.cpp LINK_LIBRARIES CIPLabeler FileParsers SubstructMatch) rdkit_test(testAtropisomers testAtropisomers.cpp LINK_LIBRARIES FileParsers SubstructMatch) rdkit_catch_test(testSquiggleDoubleBonds testSquiggleDoubleBonds.cpp LINK_LIBRARIES FileParsers SubstructMatch) rdkit_test(testMolSupplier testMolSupplier.cpp LINK_LIBRARIES FileParsers RDStreams) rdkit_test(testGeneralFileReader testGeneralFileReader.cpp LINK_LIBRARIES FileParsers RDStreams) if(RDK_TEST_MULTITHREADED) rdkit_test(testMultithreadedMolSupplier testMultithreadedMolSupplier.cpp LINK_LIBRARIES FileParsers Fingerprints RDStreams) endif(RDK_TEST_MULTITHREADED) rdkit_test(testMolWriter testMolWriter.cpp LINK_LIBRARIES CIPLabeler FileParsers) rdkit_test(testTplParser testTpls.cpp LINK_LIBRARIES FileParsers GraphMol) rdkit_test(testMol2ToMol testMol2ToMol.cpp LINK_LIBRARIES FileParsers) rdkit_test(testSequence testSequence.cpp LINK_LIBRARIES FileParsers) rdkit_test(testExtendedStereoParsing testExtendedStereoParsing.cpp LINK_LIBRARIES FileParsers) rdkit_catch_test(fileParsersCatchTest file_parsers_catch.cpp LINK_LIBRARIES FileParsers) rdkit_catch_test(macromolsCatchTest macromols_catch.cpp LINK_LIBRARIES FileParsers) rdkit_catch_test(testPropertyLists testPropertyLists.cpp LINK_LIBRARIES FileParsers) rdkit_catch_test(XYZFileParserCatchTest XYZFileParserCatchTest.cpp LINK_LIBRARIES FileParsers) rdkit_catch_test(cdxmlParserCatchTest cdxml_parser_catch.cpp LINK_LIBRARIES FileParsers) rdkit_catch_test(molfileStereoCatchTest molfile_stereo_catch.cpp LINK_LIBRARIES FileParsers CIPLabeler Subgraphs) rdkit_catch_test(connectTheDotsTest connectTheDots_catch.cpp LINK_LIBRARIES FileParsers) rdkit_catch_test(v2MolSuppliers v2_suppliers_catch.cpp LINK_LIBRARIES FileParsers) rdkit_catch_test(v2FileParsersCatchTest v2_file_parsers_catch.cpp LINK_LIBRARIES FileParsers) rdkit_catch_test(atropisomersCatch atropisomers_catch.cpp LINK_LIBRARIES FileParsers) if(RDK_TEST_MULTITHREADED AND RDK_BUILD_THREADSAFE_SSS) rdkit_catch_test(multithreadedSupplierCatchTest multithreaded_supplier_catch.cpp LINK_LIBRARIES FileParsers) endif()