From: Olivier Sallou Date: Fri, 21 Aug 2015 21:40:19 +0000 Subject: fix_binary_name Use Debian renamed recon.pl to repeatmasker-recon --- Demos/README | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) --- a/Demos/README +++ b/Demos/README @@ -21,7 +21,7 @@ The empty directory of output is where y on this example (after installation, of course). Within the output directory, type -../../scripts/recon.pl ../input/seqnames ../input/elegans.msps 1 +repeatmasker-recon ../input/seqnames ../input/elegans.msps 1 The process will generate several directories to store the output. All these directories, except for the summary directory stores intermediate --- a/00README +++ b/00README @@ -72,7 +72,7 @@ multiple times and concatenate the resul The recon script drives the running of the package. The command line format is as follows: -recon.pl seq_name_list_file MSP_file integer +repeatmasker-recon seq_name_list_file MSP_file integer The seq_name_list_file contains the names of the input sequences, one per line. The lines can be just the names, or it may be in the FASTA