--- !ruby/object:Gem::Specification
name: bio
version: !ruby/object:Gem::Version
  version: 1.4.2
  prerelease: 
platform: ruby
authors:
- BioRuby project
autorequire: bio
bindir: bin
cert_chain: []
date: 2011-08-26 00:00:00.000000000 Z
dependencies: []
description: BioRuby is a library for bioinformatics (biology + information science).
email: staff@bioruby.org
executables:
- bioruby
- br_biofetch.rb
- br_bioflat.rb
- br_biogetseq.rb
- br_pmfetch.rb
extensions: []
extra_rdoc_files:
- ChangeLog
- KNOWN_ISSUES.rdoc
- README.rdoc
- README_DEV.rdoc
- RELEASE_NOTES.rdoc
- doc/Changes-1.3.rdoc
- doc/RELEASE_NOTES-1.4.0.rdoc
- doc/RELEASE_NOTES-1.4.1.rdoc
files:
- COPYING
- COPYING.ja
- ChangeLog
- GPL
- KNOWN_ISSUES.rdoc
- LEGAL
- LGPL
- README.rdoc
- README_DEV.rdoc
- RELEASE_NOTES.rdoc
- Rakefile
- bin/bioruby
- bin/br_biofetch.rb
- bin/br_bioflat.rb
- bin/br_biogetseq.rb
- bin/br_pmfetch.rb
- bioruby.gemspec
- bioruby.gemspec.erb
- doc/ChangeLog-before-1.3.1
- doc/Changes-0.7.rd
- doc/Changes-1.3.rdoc
- doc/KEGG_API.rd
- doc/KEGG_API.rd.ja
- doc/RELEASE_NOTES-1.4.0.rdoc
- doc/RELEASE_NOTES-1.4.1.rdoc
- doc/Tutorial.rd
- doc/Tutorial.rd.html
- doc/Tutorial.rd.ja
- doc/Tutorial.rd.ja.html
- doc/bioruby.css
- etc/bioinformatics/seqdatabase.ini
- extconf.rb
- lib/bio.rb
- lib/bio/alignment.rb
- lib/bio/appl/bl2seq/report.rb
- lib/bio/appl/blast.rb
- lib/bio/appl/blast/ddbj.rb
- lib/bio/appl/blast/format0.rb
- lib/bio/appl/blast/format8.rb
- lib/bio/appl/blast/genomenet.rb
- lib/bio/appl/blast/ncbioptions.rb
- lib/bio/appl/blast/remote.rb
- lib/bio/appl/blast/report.rb
- lib/bio/appl/blast/rexml.rb
- lib/bio/appl/blast/rpsblast.rb
- lib/bio/appl/blast/wublast.rb
- lib/bio/appl/blast/xmlparser.rb
- lib/bio/appl/blat/report.rb
- lib/bio/appl/clustalw.rb
- lib/bio/appl/clustalw/report.rb
- lib/bio/appl/emboss.rb
- lib/bio/appl/fasta.rb
- lib/bio/appl/fasta/format10.rb
- lib/bio/appl/gcg/msf.rb
- lib/bio/appl/gcg/seq.rb
- lib/bio/appl/genscan/report.rb
- lib/bio/appl/hmmer.rb
- lib/bio/appl/hmmer/report.rb
- lib/bio/appl/iprscan/report.rb
- lib/bio/appl/mafft.rb
- lib/bio/appl/mafft/report.rb
- lib/bio/appl/meme/mast.rb
- lib/bio/appl/meme/mast/report.rb
- lib/bio/appl/meme/motif.rb
- lib/bio/appl/muscle.rb
- lib/bio/appl/paml/baseml.rb
- lib/bio/appl/paml/baseml/report.rb
- lib/bio/appl/paml/codeml.rb
- lib/bio/appl/paml/codeml/rates.rb
- lib/bio/appl/paml/codeml/report.rb
- lib/bio/appl/paml/common.rb
- lib/bio/appl/paml/common_report.rb
- lib/bio/appl/paml/yn00.rb
- lib/bio/appl/paml/yn00/report.rb
- lib/bio/appl/phylip/alignment.rb
- lib/bio/appl/phylip/distance_matrix.rb
- lib/bio/appl/probcons.rb
- lib/bio/appl/psort.rb
- lib/bio/appl/psort/report.rb
- lib/bio/appl/pts1.rb
- lib/bio/appl/sim4.rb
- lib/bio/appl/sim4/report.rb
- lib/bio/appl/sosui/report.rb
- lib/bio/appl/spidey/report.rb
- lib/bio/appl/targetp/report.rb
- lib/bio/appl/tcoffee.rb
- lib/bio/appl/tmhmm/report.rb
- lib/bio/command.rb
- lib/bio/compat/features.rb
- lib/bio/compat/references.rb
- lib/bio/data/aa.rb
- lib/bio/data/codontable.rb
- lib/bio/data/na.rb
- lib/bio/db.rb
- lib/bio/db/aaindex.rb
- lib/bio/db/biosql/biosql_to_biosequence.rb
- lib/bio/db/biosql/sequence.rb
- lib/bio/db/embl/common.rb
- lib/bio/db/embl/embl.rb
- lib/bio/db/embl/embl_to_biosequence.rb
- lib/bio/db/embl/format_embl.rb
- lib/bio/db/embl/sptr.rb
- lib/bio/db/embl/swissprot.rb
- lib/bio/db/embl/trembl.rb
- lib/bio/db/embl/uniprot.rb
- lib/bio/db/fantom.rb
- lib/bio/db/fasta.rb
- lib/bio/db/fasta/defline.rb
- lib/bio/db/fasta/fasta_to_biosequence.rb
- lib/bio/db/fasta/format_fasta.rb
- lib/bio/db/fasta/format_qual.rb
- lib/bio/db/fasta/qual.rb
- lib/bio/db/fasta/qual_to_biosequence.rb
- lib/bio/db/fastq.rb
- lib/bio/db/fastq/fastq_to_biosequence.rb
- lib/bio/db/fastq/format_fastq.rb
- lib/bio/db/genbank/common.rb
- lib/bio/db/genbank/ddbj.rb
- lib/bio/db/genbank/format_genbank.rb
- lib/bio/db/genbank/genbank.rb
- lib/bio/db/genbank/genbank_to_biosequence.rb
- lib/bio/db/genbank/genpept.rb
- lib/bio/db/genbank/refseq.rb
- lib/bio/db/gff.rb
- lib/bio/db/go.rb
- lib/bio/db/kegg/brite.rb
- lib/bio/db/kegg/common.rb
- lib/bio/db/kegg/compound.rb
- lib/bio/db/kegg/drug.rb
- lib/bio/db/kegg/enzyme.rb
- lib/bio/db/kegg/expression.rb
- lib/bio/db/kegg/genes.rb
- lib/bio/db/kegg/genome.rb
- lib/bio/db/kegg/glycan.rb
- lib/bio/db/kegg/keggtab.rb
- lib/bio/db/kegg/kgml.rb
- lib/bio/db/kegg/module.rb
- lib/bio/db/kegg/orthology.rb
- lib/bio/db/kegg/pathway.rb
- lib/bio/db/kegg/reaction.rb
- lib/bio/db/kegg/taxonomy.rb
- lib/bio/db/lasergene.rb
- lib/bio/db/litdb.rb
- lib/bio/db/medline.rb
- lib/bio/db/nbrf.rb
- lib/bio/db/newick.rb
- lib/bio/db/nexus.rb
- lib/bio/db/pdb.rb
- lib/bio/db/pdb/atom.rb
- lib/bio/db/pdb/chain.rb
- lib/bio/db/pdb/chemicalcomponent.rb
- lib/bio/db/pdb/model.rb
- lib/bio/db/pdb/pdb.rb
- lib/bio/db/pdb/residue.rb
- lib/bio/db/pdb/utils.rb
- lib/bio/db/phyloxml/phyloxml.xsd
- lib/bio/db/phyloxml/phyloxml_elements.rb
- lib/bio/db/phyloxml/phyloxml_parser.rb
- lib/bio/db/phyloxml/phyloxml_writer.rb
- lib/bio/db/prosite.rb
- lib/bio/db/rebase.rb
- lib/bio/db/sanger_chromatogram/abif.rb
- lib/bio/db/sanger_chromatogram/chromatogram.rb
- lib/bio/db/sanger_chromatogram/chromatogram_to_biosequence.rb
- lib/bio/db/sanger_chromatogram/scf.rb
- lib/bio/db/soft.rb
- lib/bio/db/transfac.rb
- lib/bio/feature.rb
- lib/bio/io/biosql/ar-biosql.rb
- lib/bio/io/biosql/biosql.rb
- lib/bio/io/biosql/config/database.yml
- lib/bio/io/das.rb
- lib/bio/io/dbget.rb
- lib/bio/io/ddbjrest.rb
- lib/bio/io/ddbjxml.rb
- lib/bio/io/ebisoap.rb
- lib/bio/io/ensembl.rb
- lib/bio/io/fastacmd.rb
- lib/bio/io/fetch.rb
- lib/bio/io/flatfile.rb
- lib/bio/io/flatfile/autodetection.rb
- lib/bio/io/flatfile/bdb.rb
- lib/bio/io/flatfile/buffer.rb
- lib/bio/io/flatfile/index.rb
- lib/bio/io/flatfile/indexer.rb
- lib/bio/io/flatfile/splitter.rb
- lib/bio/io/higet.rb
- lib/bio/io/hinv.rb
- lib/bio/io/keggapi.rb
- lib/bio/io/ncbirest.rb
- lib/bio/io/ncbisoap.rb
- lib/bio/io/pubmed.rb
- lib/bio/io/registry.rb
- lib/bio/io/soapwsdl.rb
- lib/bio/io/sql.rb
- lib/bio/io/togows.rb
- lib/bio/location.rb
- lib/bio/map.rb
- lib/bio/pathway.rb
- lib/bio/reference.rb
- lib/bio/sequence.rb
- lib/bio/sequence/aa.rb
- lib/bio/sequence/adapter.rb
- lib/bio/sequence/common.rb
- lib/bio/sequence/compat.rb
- lib/bio/sequence/dblink.rb
- lib/bio/sequence/format.rb
- lib/bio/sequence/format_raw.rb
- lib/bio/sequence/generic.rb
- lib/bio/sequence/na.rb
- lib/bio/sequence/quality_score.rb
- lib/bio/sequence/sequence_masker.rb
- lib/bio/shell.rb
- lib/bio/shell/core.rb
- lib/bio/shell/demo.rb
- lib/bio/shell/interface.rb
- lib/bio/shell/irb.rb
- lib/bio/shell/object.rb
- lib/bio/shell/plugin/blast.rb
- lib/bio/shell/plugin/codon.rb
- lib/bio/shell/plugin/das.rb
- lib/bio/shell/plugin/emboss.rb
- lib/bio/shell/plugin/entry.rb
- lib/bio/shell/plugin/flatfile.rb
- lib/bio/shell/plugin/keggapi.rb
- lib/bio/shell/plugin/midi.rb
- lib/bio/shell/plugin/ncbirest.rb
- lib/bio/shell/plugin/obda.rb
- lib/bio/shell/plugin/psort.rb
- lib/bio/shell/plugin/seq.rb
- lib/bio/shell/plugin/soap.rb
- lib/bio/shell/plugin/togows.rb
- lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/bioruby_generator.rb
- lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/_classes.rhtml
- lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/_log.rhtml
- lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/_methods.rhtml
- lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/_modules.rhtml
- lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/_variables.rhtml
- lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/bioruby-bg.gif
- lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/bioruby-gem.png
- lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/bioruby-link.gif
- lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/bioruby.css
- lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/bioruby.rhtml
- lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/bioruby_controller.rb
- lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/bioruby_helper.rb
- lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/commands.rhtml
- lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/history.rhtml
- lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/index.rhtml
- lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/spinner.gif
- lib/bio/shell/script.rb
- lib/bio/shell/setup.rb
- lib/bio/shell/web.rb
- lib/bio/tree.rb
- lib/bio/util/color_scheme.rb
- lib/bio/util/color_scheme/buried.rb
- lib/bio/util/color_scheme/helix.rb
- lib/bio/util/color_scheme/hydropathy.rb
- lib/bio/util/color_scheme/nucleotide.rb
- lib/bio/util/color_scheme/strand.rb
- lib/bio/util/color_scheme/taylor.rb
- lib/bio/util/color_scheme/turn.rb
- lib/bio/util/color_scheme/zappo.rb
- lib/bio/util/contingency_table.rb
- lib/bio/util/restriction_enzyme.rb
- lib/bio/util/restriction_enzyme/analysis.rb
- lib/bio/util/restriction_enzyme/analysis_basic.rb
- lib/bio/util/restriction_enzyme/cut_symbol.rb
- lib/bio/util/restriction_enzyme/dense_int_array.rb
- lib/bio/util/restriction_enzyme/double_stranded.rb
- lib/bio/util/restriction_enzyme/double_stranded/aligned_strands.rb
- lib/bio/util/restriction_enzyme/double_stranded/cut_location_pair.rb
- lib/bio/util/restriction_enzyme/double_stranded/cut_location_pair_in_enzyme_notation.rb
- lib/bio/util/restriction_enzyme/double_stranded/cut_locations.rb
- lib/bio/util/restriction_enzyme/double_stranded/cut_locations_in_enzyme_notation.rb
- lib/bio/util/restriction_enzyme/enzymes.yaml
- lib/bio/util/restriction_enzyme/range/cut_range.rb
- lib/bio/util/restriction_enzyme/range/cut_ranges.rb
- lib/bio/util/restriction_enzyme/range/horizontal_cut_range.rb
- lib/bio/util/restriction_enzyme/range/sequence_range.rb
- lib/bio/util/restriction_enzyme/range/sequence_range/calculated_cuts.rb
- lib/bio/util/restriction_enzyme/range/sequence_range/fragment.rb
- lib/bio/util/restriction_enzyme/range/sequence_range/fragments.rb
- lib/bio/util/restriction_enzyme/range/vertical_cut_range.rb
- lib/bio/util/restriction_enzyme/single_strand.rb
- lib/bio/util/restriction_enzyme/single_strand/cut_locations_in_enzyme_notation.rb
- lib/bio/util/restriction_enzyme/single_strand_complement.rb
- lib/bio/util/restriction_enzyme/sorted_num_array.rb
- lib/bio/util/restriction_enzyme/string_formatting.rb
- lib/bio/util/sirna.rb
- lib/bio/version.rb
- rdoc.zsh
- sample/any2fasta.rb
- sample/biofetch.rb
- sample/color_scheme_na.rb
- sample/dbget
- sample/demo_aaindex.rb
- sample/demo_aminoacid.rb
- sample/demo_bl2seq_report.rb
- sample/demo_blast_report.rb
- sample/demo_codontable.rb
- sample/demo_das.rb
- sample/demo_ddbjxml.rb
- sample/demo_fasta_remote.rb
- sample/demo_fastaformat.rb
- sample/demo_genbank.rb
- sample/demo_genscan_report.rb
- sample/demo_gff1.rb
- sample/demo_go.rb
- sample/demo_hmmer_report.rb
- sample/demo_kegg_compound.rb
- sample/demo_kegg_drug.rb
- sample/demo_kegg_genome.rb
- sample/demo_kegg_glycan.rb
- sample/demo_kegg_orthology.rb
- sample/demo_kegg_reaction.rb
- sample/demo_kegg_taxonomy.rb
- sample/demo_keggapi.rb
- sample/demo_litdb.rb
- sample/demo_locations.rb
- sample/demo_ncbi_rest.rb
- sample/demo_nucleicacid.rb
- sample/demo_pathway.rb
- sample/demo_prosite.rb
- sample/demo_psort.rb
- sample/demo_psort_report.rb
- sample/demo_pubmed.rb
- sample/demo_sequence.rb
- sample/demo_sirna.rb
- sample/demo_sosui_report.rb
- sample/demo_targetp_report.rb
- sample/demo_tmhmm_report.rb
- sample/enzymes.rb
- sample/fasta2tab.rb
- sample/fastagrep.rb
- sample/fastasort.rb
- sample/fsplit.rb
- sample/gb2fasta.rb
- sample/gb2tab.rb
- sample/gbtab2mysql.rb
- sample/genes2nuc.rb
- sample/genes2pep.rb
- sample/genes2tab.rb
- sample/genome2rb.rb
- sample/genome2tab.rb
- sample/goslim.rb
- sample/gt2fasta.rb
- sample/na2aa.rb
- sample/pmfetch.rb
- sample/pmsearch.rb
- sample/psortplot_html.rb
- sample/ssearch2tab.rb
- sample/tdiary.rb
- sample/test_phyloxml_big.rb
- sample/test_restriction_enzyme_long.rb
- sample/tfastx2tab.rb
- sample/vs-genes.rb
- setup.rb
- test/bioruby_test_helper.rb
- test/data/HMMER/hmmpfam.out
- test/data/HMMER/hmmsearch.out
- test/data/KEGG/1.1.1.1.enzyme
- test/data/KEGG/C00025.compound
- test/data/KEGG/D00063.drug
- test/data/KEGG/G00024.glycan
- test/data/KEGG/G01366.glycan
- test/data/KEGG/K02338.orthology
- test/data/KEGG/M00118.module
- test/data/KEGG/R00006.reaction
- test/data/KEGG/T00005.genome
- test/data/KEGG/T00070.genome
- test/data/KEGG/b0529.gene
- test/data/KEGG/ec00072.pathway
- test/data/KEGG/hsa00790.pathway
- test/data/KEGG/ko00312.pathway
- test/data/KEGG/map00030.pathway
- test/data/KEGG/map00052.pathway
- test/data/KEGG/rn00250.pathway
- test/data/SOSUI/sample.report
- test/data/TMHMM/sample.report
- test/data/aaindex/DAYM780301
- test/data/aaindex/PRAM900102
- test/data/bl2seq/cd8a_cd8b_blastp.bl2seq
- test/data/bl2seq/cd8a_p53_e-5blastp.bl2seq
- test/data/blast/2.2.15.blastp.m7
- test/data/blast/b0002.faa
- test/data/blast/b0002.faa.m0
- test/data/blast/b0002.faa.m7
- test/data/blast/b0002.faa.m8
- test/data/blast/blastp-multi.m7
- test/data/clustalw/example1.aln
- test/data/command/echoarg2.bat
- test/data/embl/AB090716.embl
- test/data/embl/AB090716.embl.rel89
- test/data/fasta/EFTU_BACSU.fasta
- test/data/fasta/example1.txt
- test/data/fasta/example2.txt
- test/data/fastq/README.txt
- test/data/fastq/error_diff_ids.fastq
- test/data/fastq/error_double_qual.fastq
- test/data/fastq/error_double_seq.fastq
- test/data/fastq/error_long_qual.fastq
- test/data/fastq/error_no_qual.fastq
- test/data/fastq/error_qual_del.fastq
- test/data/fastq/error_qual_escape.fastq
- test/data/fastq/error_qual_null.fastq
- test/data/fastq/error_qual_space.fastq
- test/data/fastq/error_qual_tab.fastq
- test/data/fastq/error_qual_unit_sep.fastq
- test/data/fastq/error_qual_vtab.fastq
- test/data/fastq/error_short_qual.fastq
- test/data/fastq/error_spaces.fastq
- test/data/fastq/error_tabs.fastq
- test/data/fastq/error_trunc_at_plus.fastq
- test/data/fastq/error_trunc_at_qual.fastq
- test/data/fastq/error_trunc_at_seq.fastq
- test/data/fastq/error_trunc_in_plus.fastq
- test/data/fastq/error_trunc_in_qual.fastq
- test/data/fastq/error_trunc_in_seq.fastq
- test/data/fastq/error_trunc_in_title.fastq
- test/data/fastq/illumina_full_range_as_illumina.fastq
- test/data/fastq/illumina_full_range_as_sanger.fastq
- test/data/fastq/illumina_full_range_as_solexa.fastq
- test/data/fastq/illumina_full_range_original_illumina.fastq
- test/data/fastq/longreads_as_illumina.fastq
- test/data/fastq/longreads_as_sanger.fastq
- test/data/fastq/longreads_as_solexa.fastq
- test/data/fastq/longreads_original_sanger.fastq
- test/data/fastq/misc_dna_as_illumina.fastq
- test/data/fastq/misc_dna_as_sanger.fastq
- test/data/fastq/misc_dna_as_solexa.fastq
- test/data/fastq/misc_dna_original_sanger.fastq
- test/data/fastq/misc_rna_as_illumina.fastq
- test/data/fastq/misc_rna_as_sanger.fastq
- test/data/fastq/misc_rna_as_solexa.fastq
- test/data/fastq/misc_rna_original_sanger.fastq
- test/data/fastq/sanger_full_range_as_illumina.fastq
- test/data/fastq/sanger_full_range_as_sanger.fastq
- test/data/fastq/sanger_full_range_as_solexa.fastq
- test/data/fastq/sanger_full_range_original_sanger.fastq
- test/data/fastq/solexa_full_range_as_illumina.fastq
- test/data/fastq/solexa_full_range_as_sanger.fastq
- test/data/fastq/solexa_full_range_as_solexa.fastq
- test/data/fastq/solexa_full_range_original_solexa.fastq
- test/data/fastq/wrapping_as_illumina.fastq
- test/data/fastq/wrapping_as_sanger.fastq
- test/data/fastq/wrapping_as_solexa.fastq
- test/data/fastq/wrapping_original_sanger.fastq
- test/data/gcg/pileup-aa.msf
- test/data/genbank/CAA35997.gp
- test/data/genbank/SCU49845.gb
- test/data/genscan/sample.report
- test/data/go/selected_component.ontology
- test/data/go/selected_gene_association.sgd
- test/data/go/selected_wikipedia2go
- test/data/iprscan/merged.raw
- test/data/iprscan/merged.txt
- test/data/litdb/1717226.litdb
- test/data/medline/20146148_modified.medline
- test/data/meme/db
- test/data/meme/mast
- test/data/meme/mast.out
- test/data/meme/meme.out
- test/data/paml/codeml/control_file.txt
- test/data/paml/codeml/models/aa.aln
- test/data/paml/codeml/models/aa.dnd
- test/data/paml/codeml/models/aa.ph
- test/data/paml/codeml/models/alignment.phy
- test/data/paml/codeml/models/results0-3.txt
- test/data/paml/codeml/models/results7-8.txt
- test/data/paml/codeml/output.txt
- test/data/paml/codeml/rates
- test/data/phyloxml/apaf.xml
- test/data/phyloxml/bcl_2.xml
- test/data/phyloxml/made_up.xml
- test/data/phyloxml/ncbi_taxonomy_mollusca_short.xml
- test/data/phyloxml/phyloxml_examples.xml
- test/data/pir/CRAB_ANAPL.pir
- test/data/prosite/prosite.dat
- test/data/refseq/nm_126355.entret
- test/data/rpsblast/misc.rpsblast
- test/data/sanger_chromatogram/test_chromatogram_abif.ab1
- test/data/sanger_chromatogram/test_chromatogram_scf_v2.scf
- test/data/sanger_chromatogram/test_chromatogram_scf_v3.scf
- test/data/sim4/complement-A4.sim4
- test/data/sim4/simple-A4.sim4
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- test/data/soft/GSE3457_family_partial.soft
- test/data/uniprot/p53_human.uniprot
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- test/unit/bio/db/pdb/test_pdb.rb
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- test/unit/bio/sequence/test_quality_score.rb
- test/unit/bio/sequence/test_sequence_masker.rb
- test/unit/bio/shell/plugin/test_seq.rb
- test/unit/bio/test_alignment.rb
- test/unit/bio/test_command.rb
- test/unit/bio/test_db.rb
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- test/unit/bio/util/restriction_enzyme/analysis/test_sequence_range.rb
- test/unit/bio/util/restriction_enzyme/double_stranded/test_aligned_strands.rb
- test/unit/bio/util/restriction_enzyme/double_stranded/test_cut_location_pair.rb
- test/unit/bio/util/restriction_enzyme/double_stranded/test_cut_location_pair_in_enzyme_notation.rb
- test/unit/bio/util/restriction_enzyme/double_stranded/test_cut_locations.rb
- test/unit/bio/util/restriction_enzyme/double_stranded/test_cut_locations_in_enzyme_notation.rb
- test/unit/bio/util/restriction_enzyme/single_strand/test_cut_locations_in_enzyme_notation.rb
- test/unit/bio/util/restriction_enzyme/test_analysis.rb
- test/unit/bio/util/restriction_enzyme/test_cut_symbol.rb
- test/unit/bio/util/restriction_enzyme/test_dense_int_array.rb
- test/unit/bio/util/restriction_enzyme/test_double_stranded.rb
- test/unit/bio/util/restriction_enzyme/test_single_strand.rb
- test/unit/bio/util/restriction_enzyme/test_single_strand_complement.rb
- test/unit/bio/util/restriction_enzyme/test_sorted_num_array.rb
- test/unit/bio/util/restriction_enzyme/test_string_formatting.rb
- test/unit/bio/util/test_color_scheme.rb
- test/unit/bio/util/test_contingency_table.rb
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homepage: http://bioruby.org/
licenses: []
post_install_message: 
rdoc_options:
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- --title
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require_paths:
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required_ruby_version: !ruby/object:Gem::Requirement
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required_rubygems_version: !ruby/object:Gem::Requirement
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requirements: []
rubyforge_project: bioruby
rubygems_version: 1.8.10
signing_key: 
specification_version: 3
summary: Bioinformatics library
test_files: []
