Index of /data/main/s/seqan/1.2-1/doc
Parent Directory
ADAPTION.char+array.html
ADAPTION.std_3a_3a_F_I_L_E+_2a.html
ADAPTION.std_3a_3abasic__string.html
ADAPTION.std_3a_3aiostream.html
CLASS.a_Request.html
CLASS_Align.html
CLASS_Align_Cols.html
CLASS_Align_Config.html
CLASS_Allocator.html
CLASS_B_F_A_M.html
CLASS_Blast_Hit.html
CLASS_Blast_Hsp.html
CLASS_Blast_Report.html
CLASS_Bundle2.html
CLASS_Bundle3.html
CLASS_Bundle5.html
CLASS_Command_Line_Option.html
CLASS_Command_Line_Parser.html
CLASS_Edge_Stump.html
CLASS_External+_Property+_Map.html
CLASS_File.html
CLASS_File_Format.html
CLASS_Finder.html
CLASS_Frequency_Distribution.html
CLASS_Functor_Complement.html
CLASS_Functor_Convert.html
CLASS_Functor_Lowcase.html
CLASS_Functor_Upcase.html
CLASS_Gaps.html
CLASS_Graph.html
CLASS_Hardwired_Shape.html
CLASS_Holder.html
CLASS_Id_Manager.html
CLASS_Index.html
CLASS_Internal_Map.html
CLASS_Internal_Pointer_Map.html
CLASS_Internal_Raw_Map.html
CLASS_Interval_Tree.html
CLASS_Iter.html
CLASS_Lexical.html
CLASS_Local_Alignment_Finder.html
CLASS_Map.html
CLASS_Markov_Model.html
CLASS_Matrix.html
CLASS_Memory_Manager.html
CLASS_Modified_Alphabet.html
CLASS_Modified_Iterator.html
CLASS_Modified_String.html
CLASS_Motif_Finder.html
CLASS_Multi_B_F_A_M.html
CLASS_Pair.html
CLASS_Pattern.html
CLASS_Pipe.html
CLASS_Pool.html
CLASS_Priority_Type.html
CLASS_Property_Map.html
CLASS_Proxy.html
CLASS_Pseudocount.html
CLASS_Score.html
CLASS_Seed.html
CLASS_Seed_Set.html
CLASS_Segment.html
CLASS_Shape.html
CLASS_Simple_Type.html
CLASS_String.html
CLASS_String_Set.html
CLASS_To_Std_Allocator.html
CLASS_Triple.html
CLASS_Tuple.html
CONCEPT_Allocator.html
CONCEPT_Container.html
CONCEPT_Finder.html
CONCEPT_Iterator.html
CONCEPT_Pattern.html
CONCEPT_Rooted+_Iterator.html
CONCEPT_Simple+_Type.html
DEMO_All+_Pairs+_Shortest+_Path.html
DEMO_Allocators.html
DEMO_Alphabets.html
DEMO_Approximate+_Searching.html
DEMO_Bellman-_Ford+_Algorithm.html
DEMO_Blast+_Reports.html
DEMO_Breadth-_First+_Search.html
DEMO_Constraint+_Iterator.html
DEMO_Depth-_First+_Search.html
DEMO_Dijkstras+_Algorithm.html
DEMO_Exact+_Searching.html
DEMO_File+_Format+_I_2f_O.html
DEMO_Floyd-_Warshall+_Algorithm.html
DEMO_Global+_Alignments.html
DEMO_H_M_M+_Silent+_States.html
DEMO_H_M_M.html
DEMO_Heaviest+_Increasing+_Subsequence.html
DEMO_Index+_Finder+_String_Set.html
DEMO_Index+_Finder.html
DEMO_Iterator+_Basics.html
DEMO_Kruskals+_Algorithm.html
DEMO_Local+_Alignments.html
DEMO_Longest+_Common+_Subsequence.html
DEMO_Longest+_Increasing+_Subsequence.html
DEMO_Maximal+_Repeats.html
DEMO_Maximal+_Unique+_Matches.html
DEMO_Maximum+_Flow.html
DEMO_Mod_Reverse.html
DEMO_Mod_View.html
DEMO_Motif+_Finder.html
DEMO_Mummy.html
DEMO_Nested+_Modifiers.html
DEMO_Pizza+_26+_Chili+_Index.html
DEMO_Prims+_Algorithm.html
DEMO_Rooted+_Iterators.html
DEMO_Shortest+_Path+in+_D_A_Gs.html
DEMO_Strongly+_Connected+_Components.html
DEMO_Suffix+_Array.html
DEMO_Supermaximal+_Repeats.html
DEMO_Topological+_Sort.html
DEMO_Transitive+_Closure.html
DEMO_Wildcard+_Searching.html
FUNCTION.abs_Freq_Of_Letters_In_Seq.html
FUNCTION.abs_Freq_Of_Letters_In_Set_Of_Seqs.html
FUNCTION.add_Child.html
FUNCTION.add_Edge.html
FUNCTION.add_Edges.html
FUNCTION.add_Option.html
FUNCTION.add_Ref.html
FUNCTION.add_Seed.html
FUNCTION.add_Seeds.html
FUNCTION.add_Value.html
FUNCTION.add_Vertex.html
FUNCTION.adjust_Top.html
FUNCTION.align_23string_Set.html
FUNCTION.alignment.html
FUNCTION.alignment_Evaluation.html
FUNCTION.all__pairs__shortest__path.html
FUNCTION.allocate.html
FUNCTION.append.html
FUNCTION.append_Cmd_Line.html
FUNCTION.append_Diag.html
FUNCTION.append_Value.html
FUNCTION.aread_At.html
FUNCTION.argument_Count.html
FUNCTION.array_Clear_Space.html
FUNCTION.array_Construct.html
FUNCTION.array_Construct_Copy.html
FUNCTION.array_Construct_Move.html
FUNCTION.array_Copy.html
FUNCTION.array_Copy_Backward.html
FUNCTION.array_Copy_Forward.html
FUNCTION.array_Destruct.html
FUNCTION.array_Fill.html
FUNCTION.array_Move.html
FUNCTION.array_Move_Backward.html
FUNCTION.array_Move_Forward.html
FUNCTION.assign.html
FUNCTION.assign_Begin_State.html
FUNCTION.assign_Cargo.html
FUNCTION.assign_Emission_Probability.html
FUNCTION.assign_End_State.html
FUNCTION.assign_Next_S.html
FUNCTION.assign_Next_T.html
FUNCTION.assign_Property.html
FUNCTION.assign_Root.html
FUNCTION.assign_Silent_Status.html
FUNCTION.assign_Source.html
FUNCTION.assign_String_Set.html
FUNCTION.assign_Target.html
FUNCTION.assign_Transition_Probability.html
FUNCTION.assign_Value.html
FUNCTION.assign_Value_By_Id.html
FUNCTION.at_Begin.html
FUNCTION.at_End.html
FUNCTION.at_Nil.html
FUNCTION.awrite_At.html
FUNCTION.back.html
FUNCTION.background_Frequency.html
FUNCTION.backward_Algorithm.html
FUNCTION.banded_Alignment.html
FUNCTION.banded_Chain_Alignment.html
FUNCTION.begin.html
FUNCTION.begin_Position.html
FUNCTION.begin_Read.html
FUNCTION.begin_State.html
FUNCTION.begin_Write.html
FUNCTION.bellman__ford__algorithm.html
FUNCTION.binomial_Coefficient.html
FUNCTION.blast_23get_Alignment.html
FUNCTION.breadth__first__search.html
FUNCTION.build_Pam.html
FUNCTION.bundle2.html
FUNCTION.bundle3.html
FUNCTION.bundle5.html
FUNCTION.bwt_At.html
FUNCTION.can_Parse_String.html
FUNCTION.cancel.html
FUNCTION.capacity.html
FUNCTION.cargo.html
FUNCTION.child_At.html
FUNCTION.child_Vertex.html
FUNCTION.children_Are_Leaves.html
FUNCTION.clear.html
FUNCTION.clear_Edges.html
FUNCTION.clear_Gaps.html
FUNCTION.clear_Vertices.html
FUNCTION.close.html
FUNCTION.col.html
FUNCTION.collect_Leaves.html
FUNCTION.cols.html
FUNCTION.compare.html
FUNCTION.complete_Profile.html
FUNCTION.compute_Generous_Capacity.html
FUNCTION.connected__components.html
FUNCTION.container.html
FUNCTION.convert.html
FUNCTION.convert_Alignment.html
FUNCTION.convert_Impl.html
FUNCTION.convert_Pattern_To_Profile.html
FUNCTION.convert_Residue_To_Frequency_Dist.html
FUNCTION.convert_Set_Of_Patterns_To_Profile.html
FUNCTION.count_Children.html
FUNCTION.count_Gaps.html
FUNCTION.count_Occurrences.html
FUNCTION.create.html
FUNCTION.create_B_W_Table.html
FUNCTION.create_Child_Table.html
FUNCTION.create_Count_Array.html
FUNCTION.create_L_C_P_Table.html
FUNCTION.create_Oracle.html
FUNCTION.create_Oracle_On_Reverse.html
FUNCTION.create_Q_Gram_Index.html
FUNCTION.create_Q_Gram_Index_Dir_Only.html
FUNCTION.create_Q_Gram_Index_S_A_Only.html
FUNCTION.create_Root.html
FUNCTION.create_Source.html
FUNCTION.create_Suffix_Array.html
FUNCTION.create_Suffix_Trie.html
FUNCTION.create_Trie.html
FUNCTION.create_Trie_On_Reverse.html
FUNCTION.create_Wotd_Index.html
FUNCTION.dag__shortest__path.html
FUNCTION.database_Name.html
FUNCTION.database_Orientation_Plus.html
FUNCTION.deallocate.html
FUNCTION.degree.html
FUNCTION.dependent.html
FUNCTION.dependent_Source.html
FUNCTION.depth__first__search.html
FUNCTION.detach.html
FUNCTION.determine_Consensus_Seq.html
FUNCTION.difference.html
FUNCTION.dijkstra.html
FUNCTION.dimension.html
FUNCTION.dir_At.html
FUNCTION.display.html
FUNCTION.display_Result.html
FUNCTION.em.html
FUNCTION.emission_Probability.html
FUNCTION.empty.html
FUNCTION.empty_Parent_Edge.html
FUNCTION.empty_Source.html
FUNCTION.end.html
FUNCTION.end_Diagonal.html
FUNCTION.end_Position.html
FUNCTION.end_Read.html
FUNCTION.end_State.html
FUNCTION.end_Write.html
FUNCTION.erase.html
FUNCTION.expectation.html
FUNCTION.extend_Seed.html
FUNCTION.extend_Seeds.html
FUNCTION.factorial.html
FUNCTION.fill.html
FUNCTION.find.html
FUNCTION.find_Begin.html
FUNCTION.find_Edge.html
FUNCTION.find_Motif.html
FUNCTION.find_Vertex.html
FUNCTION.finder_23infix.html
FUNCTION.floyd__warshall.html
FUNCTION.flush.html
FUNCTION.ford__fulkerson.html
FUNCTION.forward_Algorithm.html
FUNCTION.fragment_Begin.html
FUNCTION.fragment_Length.html
FUNCTION.gap_Value.html
FUNCTION.gap_Value_Impl.html
FUNCTION.generate_Sequence.html
FUNCTION.get_Adjacency_Matrix.html
FUNCTION.get_Alignment.html
FUNCTION.get_Argument_Value.html
FUNCTION.get_Begin_Score.html
FUNCTION.get_Begin_State.html
FUNCTION.get_Bit_Score.html
FUNCTION.get_Cargo.html
FUNCTION.get_Database_Begin.html
FUNCTION.get_Database_End.html
FUNCTION.get_Database_Name.html
FUNCTION.get_Dist.html
FUNCTION.get_Distance_Matrix.html
FUNCTION.get_E_Value.html
FUNCTION.get_E_Value_Cutoff.html
FUNCTION.get_Emission_Probability.html
FUNCTION.get_End_State.html
FUNCTION.get_Entropy.html
FUNCTION.get_Fibre.html
FUNCTION.get_First_Covered_Position.html
FUNCTION.get_Frequency.html
FUNCTION.get_Gapped_Kappa.html
FUNCTION.get_Gapped_Lambda.html
FUNCTION.get_Get_Extension.html
FUNCTION.get_Get_Open.html
FUNCTION.get_Id_Lower_Bound.html
FUNCTION.get_Id_Upper_Bound.html
FUNCTION.get_Kappa.html
FUNCTION.get_Kmer_Similarity_Matrix.html
FUNCTION.get_Lambda.html
FUNCTION.get_Last_Covered_Position.html
FUNCTION.get_Motif.html
FUNCTION.get_Next.html
FUNCTION.get_Next_S.html
FUNCTION.get_Next_T.html
FUNCTION.get_Nil.html
FUNCTION.get_Num_Gaps.html
FUNCTION.get_Occurrence.html
FUNCTION.get_Occurrences.html
FUNCTION.get_Occurrences_B_W_T.html
FUNCTION.get_Option_Value_Long.html
FUNCTION.get_Option_Value_Short.html
FUNCTION.get_Property.html
FUNCTION.get_Query_Begin.html
FUNCTION.get_Query_End.html
FUNCTION.get_Query_Name.html
FUNCTION.get_Root.html
FUNCTION.get_Scale.html
FUNCTION.get_Score.html
FUNCTION.get_Seq_No.html
FUNCTION.get_Seq_Offset.html
FUNCTION.get_Source.html
FUNCTION.get_String_Set.html
FUNCTION.get_Successor.html
FUNCTION.get_Target.html
FUNCTION.get_Transition_Probability.html
FUNCTION.get_Value.html
FUNCTION.get_Value_By_Id.html
FUNCTION.global_Alignment.html
FUNCTION.global_Chaining.html
FUNCTION.go_Begin.html
FUNCTION.go_Down.html
FUNCTION.go_End.html
FUNCTION.go_Further.html
FUNCTION.go_Next.html
FUNCTION.go_Nil.html
FUNCTION.go_Previous.html
FUNCTION.go_Right.html
FUNCTION.go_Up.html
FUNCTION.guess_File_Format.html
FUNCTION.hamming_Distance.html
FUNCTION.has_Option_Long.html
FUNCTION.has_Option_Short.html
FUNCTION.has_Prefix.html
FUNCTION.hash.html
FUNCTION.hash2.html
FUNCTION.hash2_Next.html
FUNCTION.hash_Next.html
FUNCTION.hash_Upper.html
FUNCTION.haystack.html
FUNCTION.heaviest_Increasing_Subsequence.html
FUNCTION.help.html
FUNCTION.help_Text.html
FUNCTION.host.html
FUNCTION.host_Graph.html
FUNCTION.host_Hit.html
FUNCTION.host_Report.html
FUNCTION.id.html
FUNCTION.id_Count.html
FUNCTION.id_In_Use.html
FUNCTION.id_To_Position.html
FUNCTION.in_Degree.html
FUNCTION.index_B_W_T.html
FUNCTION.index_Child_Tab.html
FUNCTION.index_Counts.html
FUNCTION.index_Counts_Dir.html
FUNCTION.index_Create.html
FUNCTION.index_Dir.html
FUNCTION.index_L_C_P.html
FUNCTION.index_L_C_P_E.html
FUNCTION.index_Raw_S_A.html
FUNCTION.index_Raw_Text.html
FUNCTION.index_Require.html
FUNCTION.index_S_A.html
FUNCTION.index_Shape.html
FUNCTION.index_Supplied.html
FUNCTION.index_Text.html
FUNCTION.infimum_Value.html
FUNCTION.infimum_Value_Impl.html
FUNCTION.infix.html
FUNCTION.infix_With_Length.html
FUNCTION.insert_Gap.html
FUNCTION.insert_Gaps.html
FUNCTION.insert_Value.html
FUNCTION.inverse_Hash.html
FUNCTION.is_Equal.html
FUNCTION.is_Gap.html
FUNCTION.is_Greater.html
FUNCTION.is_Greater_Or_Equal.html
FUNCTION.is_Left_Maximal.html
FUNCTION.is_Less.html
FUNCTION.is_Less_Or_Equal.html
FUNCTION.is_Not_Equal.html
FUNCTION.is_Partially_Left_Extensible.html
FUNCTION.is_Prefix.html
FUNCTION.is_Right_Terminal.html
FUNCTION.is_Root.html
FUNCTION.is_Set_Long.html
FUNCTION.is_Set_Short.html
FUNCTION.is_Silent.html
FUNCTION.is_Unique.html
FUNCTION.iter.html
FUNCTION.kruskals__algorithm.html
FUNCTION.label.html
FUNCTION.lca.html
FUNCTION.lcp.html
FUNCTION.lcp_At.html
FUNCTION.lcp_Length.html
FUNCTION.lcpe_At.html
FUNCTION.left_Diagonal.html
FUNCTION.left_Dim0.html
FUNCTION.left_Dim1.html
FUNCTION.left_Position.html
FUNCTION.length.html
FUNCTION.local_Alignment.html
FUNCTION.log2.html
FUNCTION.logarithmize.html
FUNCTION.long_Name.html
FUNCTION.longest_Common_Subsequence.html
FUNCTION.longest_Increasing_Subsequence.html
FUNCTION.map_23add.html
FUNCTION.map_23cargo.html
FUNCTION.map_23erase.html
FUNCTION.map_23erase_All.html
FUNCTION.map_23find.html
FUNCTION.map_23has_Key.html
FUNCTION.map_23insert.html
FUNCTION.map_23value.html
FUNCTION.map_Value.html
FUNCTION.match_Refinement.html
FUNCTION.maximum_Distance.html
FUNCTION.motif_Count.html
FUNCTION.move.html
FUNCTION.move_Source.html
FUNCTION.move_Value.html
FUNCTION.multi_Local_Alignment.html
FUNCTION.needle.html
FUNCTION.next_S.html
FUNCTION.next_T.html
FUNCTION.node_Hull_Predicate.html
FUNCTION.node_Predicate.html
FUNCTION.normalize.html
FUNCTION.num_Children.html
FUNCTION.num_Edges.html
FUNCTION.num_Hits.html
FUNCTION.num_Hsps.html
FUNCTION.num_Tree_Edges.html
FUNCTION.num_Vertices.html
FUNCTION.obtain_I_D.html
FUNCTION.obtain_Id.html
FUNCTION.open.html
FUNCTION.open_Temp.html
FUNCTION.ord_Value.html
FUNCTION.order_Occurrences.html
FUNCTION.out_Degree.html
FUNCTION.parent_Edge_First_Char.html
FUNCTION.parent_Edge_Label.html
FUNCTION.parent_Edge_Length.html
FUNCTION.parent_Rep_Length.html
FUNCTION.parent_Vertex.html
FUNCTION.parse.html
FUNCTION.parse_String.html
FUNCTION.pop.html
FUNCTION.pos_Globalize.html
FUNCTION.pos_Localize.html
FUNCTION.pos_Of_Max.html
FUNCTION.position.html
FUNCTION.position_To_Id.html
FUNCTION.prefix.html
FUNCTION.prims__algorithm.html
FUNCTION.progressive_Alignment.html
FUNCTION.property.html
FUNCTION.push.html
FUNCTION.quality_Value.html
FUNCTION.query_Name.html
FUNCTION.query_Orientation_Plus.html
FUNCTION.rawtext_At.html
FUNCTION.read.html
FUNCTION.read_At.html
FUNCTION.read_Feature.html
FUNCTION.read_Line_Type.html
FUNCTION.read_Meta.html
FUNCTION.release_All.html
FUNCTION.release_I_D.html
FUNCTION.release_Id.html
FUNCTION.release_Ref.html
FUNCTION.remove_All_Children.html
FUNCTION.remove_Child.html
FUNCTION.remove_Edge.html
FUNCTION.remove_Gap.html
FUNCTION.remove_Gaps.html
FUNCTION.remove_In_Edges.html
FUNCTION.remove_Out_Edges.html
FUNCTION.remove_Value_By_Id.html
FUNCTION.remove_Vertex.html
FUNCTION.rep_Length.html
FUNCTION.replace.html
FUNCTION.representative.html
FUNCTION.required_Arguments.html
FUNCTION.reserve.html
FUNCTION.resize.html
FUNCTION.resize_Edge_Map.html
FUNCTION.resize_Space.html
FUNCTION.resize_Vertex_Map.html
FUNCTION.rewind.html
FUNCTION.right_Diagonal.html
FUNCTION.right_Dim0.html
FUNCTION.right_Dim1.html
FUNCTION.right_Position.html
FUNCTION.root.html
FUNCTION.row.html
FUNCTION.rows.html
FUNCTION.sa_At.html
FUNCTION.score.html
FUNCTION.score_Gap.html
FUNCTION.score_Gap_Extend.html
FUNCTION.score_Gap_Open.html
FUNCTION.score_Limit.html
FUNCTION.score_Match.html
FUNCTION.score_Mismatch.html
FUNCTION.score_Seed.html
FUNCTION.scoring_Scheme.html
FUNCTION.seed_Score.html
FUNCTION.seek.html
FUNCTION.sequence_Id.html
FUNCTION.set.html
FUNCTION.set_Begin.html
FUNCTION.set_Begin_Position.html
FUNCTION.set_E_O_F.html
FUNCTION.set_End.html
FUNCTION.set_End_Position.html
FUNCTION.set_Haystack.html
FUNCTION.set_Help_Text.html
FUNCTION.set_Host.html
FUNCTION.set_Left_Diagonal.html
FUNCTION.set_Left_Dim0.html
FUNCTION.set_Left_Dim1.html
FUNCTION.set_Left_Position.html
FUNCTION.set_Long_Name.html
FUNCTION.set_Maximum_Distance.html
FUNCTION.set_Needle.html
FUNCTION.set_Position.html
FUNCTION.set_Quality_Value.html
FUNCTION.set_Right_Diagonal.html
FUNCTION.set_Right_Dim0.html
FUNCTION.set_Right_Dim1.html
FUNCTION.set_Right_Position.html
FUNCTION.set_Score_Limit.html
FUNCTION.set_Scoring_Scheme.html
FUNCTION.set_Short_Name.html
FUNCTION.set_Source.html
FUNCTION.set_Strings.html
FUNCTION.set_Value.html
FUNCTION.share_Resources.html
FUNCTION.short_Help.html
FUNCTION.short_Name.html
FUNCTION.shrink_To_Fit.html
FUNCTION.silent_Status.html
FUNCTION.size.html
FUNCTION.slow_Nj_Tree.html
FUNCTION.smith_Waterman.html
FUNCTION.smith_Waterman_Get_Next.html
FUNCTION.source.html
FUNCTION.source_Begin.html
FUNCTION.source_End.html
FUNCTION.source_Length.html
FUNCTION.source_Segment.html
FUNCTION.source_Vertex.html
FUNCTION.start_Diagonal.html
FUNCTION.string_Set.html
FUNCTION.string_Set_Limits.html
FUNCTION.string_To_Shape.html
FUNCTION.strongly__connected__components.html
FUNCTION.suffix.html
FUNCTION.sum.html
FUNCTION.sum_Of_Pairs_Score.html
FUNCTION.supremum_Value.html
FUNCTION.supremum_Value_Impl.html
FUNCTION.target.html
FUNCTION.target_Vertex.html
FUNCTION.tell.html
FUNCTION.to_C_String.html
FUNCTION.topological__sort.html
FUNCTION.transition_Probability.html
FUNCTION.transitive__closure.html
FUNCTION.transpose.html
FUNCTION.triplet_Library_Extension.html
FUNCTION.upgma_Tree.html
FUNCTION.value.html
FUNCTION.value_By_Id.html
FUNCTION.value_Construct.html
FUNCTION.value_Construct_Move.html
FUNCTION.value_Destruct.html
FUNCTION.variance.html
FUNCTION.version.html
FUNCTION.viterbi_Algorithm.html
FUNCTION.wait_For.html
FUNCTION.weight.html
FUNCTION.write.html
FUNCTION.write_At.html
FUNCTION.zscore.html
FUNCTION_Allocator_23clear.html
FUNCTION_Automaton_23label.html
FUNCTION_Blast_23get_Score.html
FUNCTION_Container_23front.html
FUNCTION_Fileformat_23read.html
FUNCTION_Fileformat_23write.html
FUNCTION_Graph_23assign_Source.html
FUNCTION_Graph_23is_Leaf.html
FUNCTION_Graph_23is_Root.html
FUNCTION_Index_23is_Leaf.html
FUNCTION_Pipelining_23front.html
FUNCTION_Priority_Type_23pop.html
FUNCTION_Priority_Type_23push.html
FUNCTION_Priority_Type_23top.html
INDEXPAGE_Adaption.html
INDEXPAGE_Class.html
INDEXPAGE_Concept.html
INDEXPAGE_Demo.html
INDEXPAGE_Function.html
INDEXPAGE_Metafunction.html
INDEXPAGE_Shortcut.html
INDEXPAGE_Spec.html
INDEXPAGE_Tag.html
INDEX_Adaption.html
INDEX_Class.html
INDEX_Class_Aggregates.html
INDEX_Class_Alignments.html
INDEX_Class_Basic.html
INDEX_Class_Blast.html
INDEX_Class_Graph.html
INDEX_Class_Index.html
INDEX_Class_Input_2f_Output.html
INDEX_Class_Map.html
INDEX_Class_Markov_Model.html
INDEX_Class_Miscellaneous.html
INDEX_Class_Modifier.html
INDEX_Class_Motif+_Search.html
INDEX_Class_Pipelining.html
INDEX_Class_Searching.html
INDEX_Class_Seed+_Handling.html
INDEX_Class_Sequences.html
INDEX_Concept.html
INDEX_Demo.html
INDEX_Demo_Basics.html
INDEX_Demo_Graph.html
INDEX_Demo_Index.html
INDEX_Demo_Miscellaneous.html
INDEX_Demo_Modifier.html
INDEX_Demo_Motif+_Search.html
INDEX_Demo_Searching.html
INDEX_Demo_System.html
INDEX_Function.html
INDEX_Function_Alignments.html
INDEX_Function_Alphabets.html
INDEX_Function_Array+_Handling.html
INDEX_Function_Blast.html
INDEX_Function_Chaining.html
INDEX_Function_Comparisons.html
INDEX_Function_Containers.html
INDEX_Function_Content+_Manipulation.html
INDEX_Function_Dependent+_Objects.html
INDEX_Function_Graph.html
INDEX_Function_Index.html
INDEX_Function_Input_2f_Output.html
INDEX_Function_Iteration.html
INDEX_Function_Map.html
INDEX_Function_Memory.html
INDEX_Function_Miscellaneous.html
INDEX_Function_Motif+_Search.html
INDEX_Function_Pipelining.html
INDEX_Function_Scoring.html
INDEX_Function_Searching.html
INDEX_Function_Seed+_Handling.html
INDEX_Function_Sequences.html
INDEX_Metafunction.html
INDEX_Metafunction_Index.html
INDEX_Metafunction_Searching.html
INDEX_Page.html
INDEX_Shortcut.html
INDEX_Shortcut.scoring.html
INDEX_Shortcut_Iterators.html
INDEX_Shortcut_Modifier.html
INDEX_Shortcut_Scoring.html
INDEX_Shortcut_Strings.html
INDEX_Spec.html
INDEX_Spec_Alignments.html
INDEX_Spec_Allocators.html
INDEX_Spec_Alphabets.html
INDEX_Spec_Blast.html
INDEX_Spec_Chaining.html
INDEX_Spec_Files.html
INDEX_Spec_Graph.html
INDEX_Spec_Holders.html
INDEX_Spec_Index.html
INDEX_Spec_Iterators.html
INDEX_Spec_Map.html
INDEX_Spec_Miscellaneous.html
INDEX_Spec_Modifier.html
INDEX_Spec_Motif+_Search.html
INDEX_Spec_Pattern+_Matching.html
INDEX_Spec_Pipelining.html
INDEX_Spec_Proxies.html
INDEX_Spec_Scoring.html
INDEX_Spec_Searching.html
INDEX_Spec_Seed+_Handling.html
INDEX_Spec_Segments.html
INDEX_Spec_Sequences.html
INDEX_Spec_Strings.html
INDEX_Tag.html
INDEX_Tag_Index.html
INDEX_Tag_Motif+_Search.html
INDEX_Tag_Searching.html
INDEX_Tag_Seed+_Handling.html
INDEX_Tag_Strings.html
MEMFUNC.~_Holder.html
MEMFUNC.~_Score.html
MEMFUNC_Adaptor_Iterator_23_Iter.html
MEMFUNC_Chained_Seed_23_Seed.html
MEMFUNC_Command_Line_Option_23_Command_Line_Option.html
MEMFUNC_Command_Line_Parser_23_Command_Line_Parser.html
MEMFUNC_Ext_String_23_String.html
MEMFUNC_Filter_23_Pipe.html
MEMFUNC_Generic_Shape_23_Shape.html
MEMFUNC_Holder.html
MEMFUNC_Infix_Segment_23_Segment.html
MEMFUNC_Markov_Model_23_Markov_Model.html
MEMFUNC_Markov_Model_23build.html
MEMFUNC_Markov_Model_23emitted_Probability.html
MEMFUNC_Markov_Model_23read.html
MEMFUNC_Markov_Model_23set.html
MEMFUNC_Markov_Model_23write.html
MEMFUNC_Namer_23_Pipe.html
MEMFUNC_Pair_23_Pair.html
MEMFUNC_Pipe_23_Pipe.html
MEMFUNC_Position_Iterator_23_Iter.html
MEMFUNC_Prefix_Segment_23_Segment.html
MEMFUNC_Score.html
MEMFUNC_Score_23_Score.html
MEMFUNC_Seed_Set_23_Seed_Set.html
MEMFUNC_Shape_23_Shape.html
MEMFUNC_Simple_Seed_23_Seed.html
MEMFUNC_Simple_Shape_23_Shape.html
MEMFUNC_Suffix_Segment_23_Segment.html
MEMFUNC_To_Std_Allocator.html
MEMFUNC_Triple_23_Triple.html
MEMVAR_Bundle2_23in1.html
MEMVAR_Bundle2_23in2.html
MEMVAR_Bundle3_23in1.html
MEMVAR_Bundle3_23in2.html
MEMVAR_Bundle3_23in3.html
MEMVAR_Bundle5_23in1.html
MEMVAR_Bundle5_23in2.html
MEMVAR_Bundle5_23in3.html
MEMVAR_Bundle5_23in4.html
MEMVAR_Bundle5_23in5.html
MEMVAR_Markov_Model_23order.html
MEMVAR_Markov_Model_23stationary_Distribution.html
MEMVAR_Markov_Model_23transition.html
MEMVAR_Pair_23i1.html
MEMVAR_Pair_23i2.html
MEMVAR_Triple_23i1.html
MEMVAR_Triple_23i2.html
MEMVAR_Triple_23i3.html
METAFUNCTION_Allows_Fast_Random_Access.html
METAFUNCTION_Alphabet.html
METAFUNCTION_Bits_Per_Value.html
METAFUNCTION_Bytes_Per_Value.html
METAFUNCTION_Cargo.html
METAFUNCTION_Col.html
METAFUNCTION_Cols.html
METAFUNCTION_Comparator.html
METAFUNCTION_Compare_Type.html
METAFUNCTION_Container.html
METAFUNCTION_Convert.html
METAFUNCTION_Deepest_Spec.html
METAFUNCTION_Default_Finder.html
METAFUNCTION_Default_Get_Iterator_Spec.html
METAFUNCTION_Default_Index_Creator.html
METAFUNCTION_Default_Index_Spec.html
METAFUNCTION_Default_Index_String_Spec.html
METAFUNCTION_Default_Iterator_Spec.html
METAFUNCTION_Default_Overflow_Explicit.html
METAFUNCTION_Default_Overflow_Implicit.html
METAFUNCTION_Default_Pattern.html
METAFUNCTION_Default_Prefix_Order.html
METAFUNCTION_Difference.html
METAFUNCTION_Edge_Descriptor.html
METAFUNCTION_Edge_Id_Handler.html
METAFUNCTION_Edge_Type.html
METAFUNCTION_Fibre.html
METAFUNCTION_Gapped_Value_Type.html
METAFUNCTION_Get_Source.html
METAFUNCTION_Get_V_S_Tree_Iterator_Traits.html
METAFUNCTION_Get_Value.html
METAFUNCTION_Haystack.html
METAFUNCTION_Hit.html
METAFUNCTION_Host.html
METAFUNCTION_Hsp.html
METAFUNCTION_Id.html
METAFUNCTION_Infix.html
METAFUNCTION_Integral_For_Value.html
METAFUNCTION_Is_Contiguous.html
METAFUNCTION_Is_Sequence.html
METAFUNCTION_Is_Simple.html
METAFUNCTION_Iterator.html
METAFUNCTION_Key.html
METAFUNCTION_L_E_N_G_T_H.html
METAFUNCTION_Motif.html
METAFUNCTION_Needle.html
METAFUNCTION_Pex_Multi_Finder.html
METAFUNCTION_Position.html
METAFUNCTION_Prefix.html
METAFUNCTION_Reference.html
METAFUNCTION_Row.html
METAFUNCTION_Rows.html
METAFUNCTION_S_A_Value.html
METAFUNCTION_Scoring_Scheme.html
METAFUNCTION_Size.html
METAFUNCTION_Source.html
METAFUNCTION_Spec.html
METAFUNCTION_String_Set_Type.html
METAFUNCTION_Suffix.html
METAFUNCTION_Value.html
METAFUNCTION_Value_Size.html
METAFUNCTION_Vertex_Descriptor.html
METAFUNCTION_Vertex_Id_Handler.html
METAFUNCTION_W_E_I_G_H_T.html
METAFUNCTION_Weight.html
PAGE.dddoc.html
PAGE_Alignments.html
PAGE_Files.html
PAGE_Glossary.html
PAGE_Graphs.html
PAGE_Indices.html
PAGE_Installation.html
PAGE_Metafunctions.html
PAGE_Modifiers.html
PAGE_Motif+_Search.html
PAGE_Scoring.html
PAGE_Searching.html
PAGE_Sequences.html
PAGE_Template+_Subclassing.html
SHORTCUT_Blosum30.html
SHORTCUT_Blosum62.html
SHORTCUT_Blosum80.html
SHORTCUT_Char_Iterator.html
SHORTCUT_Char_String.html
SHORTCUT_Dna5_Iterator.html
SHORTCUT_Dna5_String.html
SHORTCUT_Dna5_String_Complement.html
SHORTCUT_Dna5_String_Reverse.html
SHORTCUT_Dna5_String_Reverse_Complement.html
SHORTCUT_Dna_Iterator.html
SHORTCUT_Dna_String.html
SHORTCUT_Dna_String_Complement.html
SHORTCUT_Dna_String_Reverse.html
SHORTCUT_Dna_String_Reverse_Complement.html
SHORTCUT_Edit_Distance_Score.html
SHORTCUT_Iupac_Iterator.html
SHORTCUT_Iupac_String.html
SHORTCUT_Mod_Complement_Dna.html
SHORTCUT_Mod_Complement_Dna5.html
SHORTCUT_Peptide.html
SHORTCUT_Peptide_Iterator.html
SHORTCUT_Simple_Score.html
SHORTCUT_Unicode_Iterator.html
SHORTCUT_Unicode_String.html
SPEC_Abndm_Algo.html
SPEC_Adaptor+_Iterator.html
SPEC_Adjacency+_Iterator.html
SPEC_Aho_Corasick.html
SPEC_Align_Col_Iterator.html
SPEC_Alignment+_Graph.html
SPEC_Alloc+_String.html
SPEC_Alphabet+_Expansion.html
SPEC_Amino_Acid.html
SPEC_Array+_String.html
SPEC_Array_Gaps.html
SPEC_Async.html
SPEC_Automaton.html
SPEC_B_F_A_M.html
SPEC_B_F_A_M_3c_Oracle_3e.html
SPEC_B_F_A_M_3c_Trie_3e.html
SPEC_Basic_Info.html
SPEC_Bfs+_Iterator.html
SPEC_Blast_N.html
SPEC_Blast_P.html
SPEC_Block+_String.html
SPEC_Bndm_Algo.html
SPEC_Bottom_Up+_Iterator.html
SPEC_C_Mode.html
SPEC_C_Style+_String.html
SPEC_Caster.html
SPEC_Chained.html
SPEC_Chained_Seed.html
SPEC_Chunk+_Pool+_Allocator.html
SPEC_Concat_Direct.html
SPEC_Counter.html
SPEC_Counting+_Id_Manager.html
SPEC_D_P_Search.html
SPEC_Dependent.html
SPEC_Dequeue.html
SPEC_Dfs+_Preorder+_Iterator.html
SPEC_Directed+graph.html
SPEC_Dna.html
SPEC_Dna5.html
SPEC_E_Pattern_Branching.html
SPEC_Echoer.html
SPEC_Edge+_Iterator.html
SPEC_Edit_Distance.html
SPEC_Edit_Environment.html
SPEC_External+_String.html
SPEC_File+_Reader+_String.html
SPEC_Filter.html
SPEC_Finite.html
SPEC_Full_Info.html
SPEC_Gapped_Shape.html
SPEC_Generic_Shape.html
SPEC_Hamming_Horspool.html
SPEC_Hierarchical.html
SPEC_Hit_Iterator.html
SPEC_Hmm.html
SPEC_Horspool.html
SPEC_Hsp_Iterator.html
SPEC_Index___D_F_I.html
SPEC_Index___E_S_A.html
SPEC_Index___Q_Gram.html
SPEC_Index___Wotd.html
SPEC_Infix_Segment.html
SPEC_Iterator+_Proxy.html
SPEC_Iupac.html
SPEC_Joiner.html
SPEC_M_U_Ms+_Iterator.html
SPEC_Mapper_Config.html
SPEC_Mapper_Config_Size.html
SPEC_Mapper_Spec.html
SPEC_Max_Repeats+_Iterator.html
SPEC_Memory_Manager_Index.html
SPEC_Memory_Manager_Pointer.html
SPEC_Mod_Reverse.html
SPEC_Mod_View.html
SPEC_Multi+_Pool+_Allocator.html
SPEC_Multi_B_F_A_M.html
SPEC_Multi_B_F_A_M_3c_Oracle_3e.html
SPEC_Multi_M_E_Ms+_Iterator.html
SPEC_Multi_Seed.html
SPEC_Multiple_Shift_And.html
SPEC_Myers.html
SPEC_Myers_Ukkonen.html
SPEC_Namer.html
SPEC_Non_Hierarchical.html
SPEC_Non_Scored+_Seed_Set.html
SPEC_Oracle.html
SPEC_Out-_Edge+_Iterator.html
SPEC_Owner.html
SPEC_P_M_S1.html
SPEC_P_M_S_P.html
SPEC_P_Mode.html
SPEC_Packed+_String.html
SPEC_Pam.html
SPEC_Pex.html
SPEC_Pizza+_26+_Chili+_Index.html
SPEC_Pizza+_26+_Chili+_String.html
SPEC_Pool_Config.html
SPEC_Pool_Config_Size.html
SPEC_Pool_Spec.html
SPEC_Position+_Iterator.html
SPEC_Prefix_Segment.html
SPEC_Priority_Heap.html
SPEC_Projection.html
SPEC_Sampler.html
SPEC_Score+_Chain_So_P.html
SPEC_Score+_Manhattan.html
SPEC_Score+_Matrix.html
SPEC_Score+_Zero.html
SPEC_Scored+_Seed_Set.html
SPEC_Sequence_Gaps.html
SPEC_Set_Horspool.html
SPEC_Shift_And.html
SPEC_Shift_Or.html
SPEC_Shifter.html
SPEC_Simple+_Allocator.html
SPEC_Simple+_Finder.html
SPEC_Simple+_Score.html
SPEC_Simple_Iterator.html
SPEC_Simple_Seed.html
SPEC_Simple_Shape.html
SPEC_Single+_Pool+_Allocator.html
SPEC_Skiplist.html
SPEC_Sorter_Config.html
SPEC_Sorter_Config_Size.html
SPEC_Sorter_Spec.html
SPEC_Source.html
SPEC_Store_Report.html
SPEC_Stream_Report.html
SPEC_String.html
SPEC_Striped.html
SPEC_Suffix_Segment.html
SPEC_Sumlist_Gaps.html
SPEC_Super_Max_Repeats+_Iterator.html
SPEC_Super_Max_Repeats_Fast+_Iterator.html
SPEC_Sync.html
SPEC_Top_Down+_Iterator.html
SPEC_Top_Down_History+_Iterator.html
SPEC_Trace_Back.html
SPEC_Tree.html
SPEC_Trie.html
SPEC_Tristate+_Holder.html
SPEC_Tupler.html
SPEC_Undirected+graph.html
SPEC_Ungapped_Shape.html
SPEC_V_S_Tree+_Iterator.html
SPEC_Vector_Set.html
SPEC_Vertex+_Iterator.html
SPEC_Wild_Shift_And.html
SPEC_Word+_Graph.html
SPEC_Wu_Manber.html
TAG_Alignment+_Graph+_Combination.html
TAG_Alignment+_Graph+_Format.html
TAG_Allocator+_Usage.html
TAG_Consensus+_Calling.html
TAG_Default.html
TAG_Distance+_Calculation.html
TAG_Dot_Drawing.html
TAG_E_S_A+_Index+_Fibres.html
TAG_Empty_Edges.html
TAG_External_Config.html
TAG_External_Config_Large.html
TAG_External_Config_Size.html
TAG_File+_Format.html
TAG_Global+_Alignment+_Algorithms.html
TAG_Graph+_Iterator.html
TAG_Hamming_Distance.html
TAG_Hide_Empty_Edges.html
TAG_Index+_Find+_Algorithm.html
TAG_Iterator+_Spec.html
TAG_Levenshtein_Distance.html
TAG_Local+_Alignment+_Algorithms.html
TAG_Logical+_Values.html
TAG_Move+_Switch.html
TAG_Nothing.html
TAG_O_M_O_P_S.html
TAG_O_O_P_S.html
TAG_Overflow+_Strategy.html
TAG_Pizza+_26+_Chili+_Index+_Fibres.html
TAG_Pizza+_26+_Chili+_Index+_Tags.html
TAG_Postorder.html
TAG_Postorder_Empty_Edges.html
TAG_Prefix+_Order.html
TAG_Preorder.html
TAG_Preorder_Empty_Edges.html
TAG_Q_Gram+_Index+_Fibres.html
TAG_Seed+_Adding.html
TAG_Seed+_Extension.html
TAG_Seed_Set.html
TAG_Segment+_Match+_Generation.html
TAG_T_C_M.html
TAG_Upgma+_Configurator.html
TAG_Z_O_O_P_S.html
alignment.cpp
alignmentExample.png
alignmentGraph.png
alignment_local.cpp
alignments.png
allocator.cpp
alphabet.cpp
automatonGraph.png
blast_report.cpp
contentGraph.png
dddoc.js
dddoc_empty.gif
dddoc_html.css
dddoc_minus.gif
dddoc_plus.gif
directedGraph.png
file_format.cpp
find_approx.cpp
find_exact.cpp
find_motif.cpp
find_wild.cpp
graph_algo_bfs.cpp
graph_algo_dfs.cpp
graph_algo_flow_fordfulkerson.cpp
graph_algo_his.cpp
graph_algo_lcs.cpp
graph_algo_lis.cpp
graph_algo_path_allpairs.cpp
graph_algo_path_bellmanford.cpp
graph_algo_path_dag.cpp
graph_algo_path_dijkstra.cpp
graph_algo_path_floydwarshall.cpp
graph_algo_path_transitive.cpp
graph_algo_scc.cpp
graph_algo_topsort.cpp
graph_algo_tree_kruskal.cpp
graph_algo_tree_prim.cpp
graph_hmm.cpp
graph_hmm_silent.cpp
graphs.png
index.html
index_find.cpp
index_find_stringset.cpp
index_maxrepeats.cpp
index_mummy.cpp
index_mums.cpp
index_node_predicate.cpp
index_sufarray.cpp
index_supermaxrepeats.cpp
indices.png
iterator.cpp
metafunctions.png
modifier_modreverse.cpp
modifier_modview.cpp
modifier_nested.cpp
motif_finding_example.png
motif_finding_example_solution.png
otherGraphs.png
pizzachili.cpp
rooted_iterator.cpp
searchfile.js
searching.png
seqan_logo.gif
seqan_logo_large.png
sequences.png
shape_predefined.h
streeNoSentinel.png
streePostorder.png
streePreorder.png
streeSentinel.png
template_subclassing.png
treeGraph.png
trieGraph.png
undirectedGraph.png
vc++_option_page.png
vc++_property_page.png
Apache Server at sources.debian.org Port 443