#!/usr/bin/python3

import shasta
import GetConfig

# Read the config file.
config = GetConfig.getConfig()


# Initialize the assembler and access what we need.
a = shasta.Assembler()
a.accessAlignmentDataReadWrite()
a.accessReadGraphReadWrite()
a.flagCrossStrandReadGraphEdges(
    maxDistance = int(config['ReadGraph']['crossStrandMaxDistance']))