Subject: Disable tests using copyrigthed seq
Description: upstream constains copyrighted sequence,
 removed form packaged. This patch removes tests using this
 sequence
Author: Olivier Sallou <osallou@debian.org>
Last-Updated: 2013-02-18
Forwarded: No
--- a/test/Makefile.am
+++ b/test/Makefile.am
@@ -7,7 +7,7 @@ TESTS = squizz.sh fmtseq.sh fmtali.sh co
 
 TESTS_ALIS = clustal.sh mega.sh msf.sh nexusi.sh phylipi.sh phylips.sh \
 	stockholm.sh
-TESTS_SEQS = embl.sh genbank.sh ig.sh nbrf.sh raw.sh sprot.sh
+TESTS_SEQS = embl.sh genbank.sh ig.sh nbrf.sh raw.sh
 
 XFAIL_TESTS =
 
@@ -19,6 +19,6 @@ ALIS = align/clustal.seq align/fasta.seq
 SEQS = sequence/embl.seq sequence/fasta.seq sequence/gde.seq \
 	sequence/genbank.seq sequence/genpept.seq sequence/gcg.seq \
 	sequence/ig.seq sequence/nbrf.seq sequence/codata.seq sequence/raw.seq \
-	sequence/refseqn.seq sequence/refseqp.seq sequence/sprot.seq
+	sequence/refseqn.seq sequence/refseqp.seq
 
 EXTRA_DIST = $(TESTS) $(DATAS)
--- a/test/Makefile.in
+++ b/test/Makefile.in
@@ -458,7 +458,7 @@ TESTS = squizz.sh fmtseq.sh fmtali.sh co
 TESTS_ALIS = clustal.sh mega.sh msf.sh nexusi.sh phylipi.sh phylips.sh \
 	stockholm.sh
 
-TESTS_SEQS = embl.sh genbank.sh ig.sh nbrf.sh raw.sh sprot.sh
+TESTS_SEQS = embl.sh genbank.sh ig.sh nbrf.sh raw.sh
 DATAS = $(ALIS) $(SEQS)
 ALIS = align/clustal.seq align/fasta.seq align/mega.seq align/msf.seq \
 	align/nexusi.seq align/phylipi.seq align/phylips.seq align/stock.seq
@@ -466,7 +466,7 @@ ALIS = align/clustal.seq align/fasta.seq
 SEQS = sequence/embl.seq sequence/fasta.seq sequence/gde.seq \
 	sequence/genbank.seq sequence/genpept.seq sequence/gcg.seq \
 	sequence/ig.seq sequence/nbrf.seq sequence/codata.seq sequence/raw.seq \
-	sequence/refseqn.seq sequence/refseqp.seq sequence/sprot.seq
+	sequence/refseqn.seq sequence/refseqp.seq
 
 EXTRA_DIST = $(TESTS) $(DATAS)
 all: all-am
--- a/test/convseq.sh
+++ b/test/convseq.sh
@@ -4,7 +4,7 @@ tmpseq=_convert.seq
 
 ## Sequence files location
 seqdir=$srcdir/sequence
-seqlist='codata.seq embl.seq fasta.seq gcg.seq gde.seq genbank.seq genpept.seq ig.seq nbrf.seq raw.seq refseqn.seq refseqp.seq sprot.seq'
+seqlist='codata.seq embl.seq fasta.seq gcg.seq gde.seq genbank.seq genpept.seq ig.seq nbrf.seq raw.seq refseqn.seq refseqp.seq'
 
 ## Checks CODATA-like sequence
 for f in $seqlist; do
@@ -61,10 +61,10 @@ for f in $seqlist; do
 done
 
 ## Checks SWISSPROT-like sequence
-for f in $seqlist; do
-  ../src/squizz -c swissprot $seqdir/$f >$tmpseq 2>/dev/null
-  (../src/squizz $tmpseq 2>&1 | grep -v SWISSPROT) && exit 1
-done
+#for f in $seqlist; do
+#  ../src/squizz -c swissprot $seqdir/$f >$tmpseq 2>/dev/null
+#  (../src/squizz $tmpseq 2>&1 | grep -v SWISSPROT) && exit 1
+#done
 
 ## Clean temp files
 rm -f $tmpseq
--- a/test/fmtseq.sh
+++ b/test/fmtseq.sh
@@ -58,10 +58,10 @@ for f in $seqlist; do
 done
 
 ## Checks SWISSPROT-like sequence
-seqlist='sprot.seq'
-for f in $seqlist; do
-  (../src/squizz $srcdir/$f 2>&1 | grep -v SWISSPROT) && exit 1
-done
+#seqlist='sprot.seq'
+#for f in $seqlist; do
+#  (../src/squizz $srcdir/$f 2>&1 | grep -v SWISSPROT) && exit 1
+#done
 
 exit 0