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#
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#               National Center for Biotechnology Information
#
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#  terms of the United States Copyright Act.  It was written as part of
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if( Python3_EXECUTABLE )

    set( SOURCES
        AlignTest.py
        AlignSliceTest.py
        FragTest.py
        PileupTest.py
        RefTest.py
    )

    if ( SINGLE_CONFIG )

        if ( NOT TOOLS_ONLY )
            macro( RunAndDiff TestName TestParams )
                add_test( NAME Test_NgsPythonExamples_${TestName}
                    COMMAND
                    bash -c "NCBI_VDB_QUALITY=R ${Python3_EXECUTABLE} ${TestName}.py ${TestParams}  > actual/${TestName} && diff expected/${TestName} actual/${TestName}"
                    WORKING_DIRECTORY ${CMAKE_CURRENT_SOURCE_DIR}
                )
                set_tests_properties( Test_NgsPythonExamples_${TestName}

                    PROPERTIES ENVIRONMENT "NGS_PY_DOWNLOAD_LIBRARY=0;PYTHONUSERBASE=${PythonUserBase};NGS_PY_LIBRARY_PATH=${LIBDIR}" DEPENDS Test_NGS_Python_install
                    LABELS "online"
                    )
            endmacro()

            RunAndDiff( FragTest "ERR225922 10000 2" )
            RunAndDiff( AlignTest "ERR225922 10000 2" )
            RunAndDiff( AlignSliceTest "SRR1121656 1 1 9999" )
            RunAndDiff( PileupTest "SRR1121656 1 9999 10003" )
            RunAndDiff( RefTest "SRR1121656" )
        endif()

        set( INSTALL_DEST ${CMAKE_INSTALL_PREFIX}/share/examples-python )

        install(FILES ${SOURCES} expected.txt
            DESTINATION ${INSTALL_DEST} )

        install(FILES ${CMAKE_CURRENT_SOURCE_DIR}/Makefile.install
            DESTINATION ${INSTALL_DEST}
            RENAME Makefile
        )
        install(FILES ${CMAKE_CURRENT_SOURCE_DIR}/README.install
            DESTINATION ${INSTALL_DEST}
            RENAME README.txt
        )
    endif()

endif()