#sample replicate left.reads right.reads heatshock hs_rep1 ../test_DATA/Sp_hs.10k.left.fq.gz ../test_DATA/Sp_hs.10k.right.fq.gz plateau plat_rep1 ../test_DATA/Sp_plat.10k.left.fq.gz ../test_DATA/Sp_plat.10k.right.fq.gz log_growth log_rep1 ../test_DATA/Sp_log.10k.left.fq.gz ../test_DATA/Sp_log.10k.right.fq.gz diauxic_shift ds_rep1 ../test_DATA/Sp_ds.10k.left.fq.gz ../test_DATA/Sp_ds.10k.right.fq.gz