From a714b59bd9e2ca2e63312bc3491b2b037a42f2f2 Mon Sep 17 00:00:00 2001 From: Leland McInnes Date: Mon, 26 Dec 2022 17:07:07 -0500 Subject: [PATCH] sklearn parwise distances doesn't support np.matrix anymore --- umap/tests/test_umap_metrics.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) --- a/umap/tests/test_umap_metrics.py +++ b/umap/tests/test_umap_metrics.py @@ -141,7 +141,7 @@ assert ( metric in spdist.sparse_named_distances ), f"{metric} not supported for sparse data" - dist_matrix = pairwise_distances(sparse_binary_data.todense(), metric=metric) + dist_matrix = pairwise_distances(np.asarray(sparse_binary_data.todense()), metric=metric) if metric in ("jaccard", "dice", "sokalsneath", "yule"): dist_matrix[np.where(~np.isfinite(dist_matrix))] = 0.0