Description: Use Debian packaged toml11
Author: Andreas Tille <tille@debian.org>
Last-Update: Wed, 16 Feb 2022 15:39:15 +0100

--- a/Makefile
+++ b/Makefile
@@ -10,7 +10,7 @@ BWA_LIB=$(LIBBWA)
 BWA_INCLUDE=-I/usr/include/bwa
 
 LIBS=$(HDF5_LIB) $(BWA_LIB) -lstdc++ -lz -ldl -pthread -lm 
-INCLUDE=-I submods/ -I submods/toml11 -I/usr/include/fast5/ $(shell pybind11-config --includes) -I submods/pdqsort $(HDF5_INCLUDE) $(BWA_INCLUDE)
+INCLUDE= -I/usr/include/fast5/ $(shell pybind11-config --includes) $(HDF5_INCLUDE) $(BWA_INCLUDE)
 
 SRC=src
 BUILD=build
--- a/setup.py
+++ b/setup.py
@@ -10,7 +10,6 @@ ROOT_DIR = os.getcwd()
 
 SUBMOD_DIR = os.path.join(ROOT_DIR, "submods")
 SUBMODS = [
-    "toml11"
 ]
 
 class get_pybind_include(object):
@@ -100,7 +99,6 @@ uncalled = Extension(
         subprocess.check_output("pkg-config  --cflags hdf5-serial | sed 's/-I//'", shell=True, encoding='UTF-8').strip(), 
         "/usr/include/fast5/",
         "/usr/include/",
-        "./submods/toml11",
         get_pybind_include()
     ],