Index of /data/main/v/vmatch/2.3.1+dfsg-8/src/doc/output

• Parent Directory
• cat-ATsmall.des.out
• cat-ATsmall.units.out
• cat-Codonseq.fna.out
• cat-ORFs.out
• cat-Patterns.out
• cat-Proteinseq.out
• cat-clout.3.1.match.out
• cat-clout.3.2.match.out
• cat-clout.4.1.match.out
• cat-ecolicmp.of.out
• cat-ecolicmp.vm.out
• chain2dim--global-ecolicmp.vm.out
• chain2dim--local--maxgap-20-ecolicmp.of.out
• chain2dim--local-2b--v-ecolicmp.of.out
• chain2dim--local-55p--silent-ecolicmp.of.out
• chain2dim--local-ecolicmp.of.out
• chain2dim--silent--global-gc-ecolicmp.of.out
• chain2dim--wf-0.5--local-ecolicmp.of.out
• chain2dim--wf-1.8--local-ecolicmp.of.out
• changepath.sh
• ls--l-EcoliO157H7..out
• ls--l-atEST..out
• ls--l-clout..out
• matchcluster--erate-35--outprefix-clout-ychrIII-100.match.out
• matchcluster--gapsize-1000--outprefix-clout-ychrIII-100.match.out
• matchcluster--overlap-10--outprefix-clout-ychrIII-100.match.out
• mkdna6idx--db-Codonseq.fna--indexname-Codonseq--tis--ois--v.out
• mkdna6idx--tis--ois--db-seqs3--smap-TransProt11--v.out
• mkrcidx--db-seqs4--v.out
• mkrcidx--v--db-indexfile.fna--indexname-indexname-bothstrands.out
• mkvtree--db-EcoliK12--tis--ois--v--dna.out
• mkvtree--db-EcoliO157H7--v--pl--sti1--bwt--dna--bck--suf--lcp--tis--ois--skp.out
• mkvtree--db-Proteinseq--smap-TransProt11--pl--allout--v.out
• mkvtree--db-atEST--dna--pl--allout--v.out
• mkvtree--dna--db-ychrIII.fna--v--tis--ois--bwt--suf--lcp.out
• mkvtree--dna--pl--suf--tis--v--db-indexfile.fna--indexname-indexname.out
• mkvtree--dna--pl--tis--suf--lcp--v--db-read1.fna--indexname-read1.out
• mkvtree--dna--pl--tis--suf--lcp--v--db-read2.fna--indexname-read2.out
• mkvtree--indexname-ATS--dna--tis--sti1--bck--suf--lcp--pl--v--db-ATs-00.out
• mkvtree--pl--suf--bwt--lcp--tis--dna--db-seqs4--v.out
• mkvtree--pl--suf--bwt--lcp--tis--dna--v--db-ATsmall.out
• mkvtree--protein--db-swissp.sp.gz--pl--lcp--suf--tis--ois--bwt--bck--v.out
• multimat--count--l-5--units-ATsmall.units-ATsmall.out
• multimat--l-1--count-seqs4.out
• multimat--l-2--p--s-seqs4.rcm.out
• multimat--l-3--range-0-1-5-seqs4.out
• multimat--l-3--s-seqs4.out
• multimat--l-3--showevalue-seqs4.out
• multimat--l-3-seqs4.out
• multimat--l-5-ATsmall.out
• multimat--l-15--d--s-seqs3.6fr.out
• multimat--rare-0-2--rare-1--l-5--units-ATsmall.units-ATsmall.out
• multimat--rare-1--s--l-5--units-ATsmall.units-ATsmall.out
• multimat--s--l-5--algorithm-memset-ATsmall.out
• multimat--s--l-6--selfun-selmulticontext.so--units-ATsmall.units-ATsmall.out
• multimat--s--l-7--units-ATsmall.units-ATsmall.out
• multimat--unitol-0--s--l-5--units-ATsmall.units-ATsmall.out
• ramaco--l-6--rare-5-ATS-ATs-01-ATs-02-ATs-03.out
• ramaco--phase-output--l-6--rare-5-ATS--ATs-01-ATs-02-ATs-03.out
• ramaco--v--phase-output--l-6--rare-5-ATS-ATs-01-ATs-02-ATs-03.out
• ramaco--v--phase-search--l-6--rare-5-ATS--ATs-01.out
• ramaco--v--phase-search--l-6--rare-5-ATS-ATs-01-ATs-02-ATs-03.out
• runexamples.sh
• tallymer-mkindex--mersize-19--minocc-4--indexname-reads--counts--pl-read1-read2.out
• tallymer-mkindex--mersize-19--minocc-40-read1-read2.out
• tallymer-occratio--output-unique-nonunique--mersizes-10-13-17-read1-read2.out
• tallymer-occratio--output-unique-nonunique--minmersize-10--maxmersize-20-read1-read2.out
• tallymer-occratio--output-unique-relative--minmersize-10--maxmersize-20-read1-read2.out
• tallymer-search--output-qseqnum-qpos-counts-sequence-reads-U89959.fna.out
• uniquesub--max-4--output-querypos-sequence-indexname-queryfile.fna.out
• uniquesub--min-5--output-querypos-sequence-indexname-queryfile.fna.out
• uniquesub--output-subjectpos-querypos-indexname-queryfile.fna.out
• uniquesub--output-subjectpos-querypos-sequence-indexname-bothstrands.rcm-queryfile.fna.out
• uniquesub--output-subjectpos-querypos-sequence-indexname-queryfile.fna.out
• vmatch--complete--d--p--q-ORFs--s--showdesc-10-atEST.out
• vmatch--complete--d--q-Patterns-EcoliO157H7.out
• vmatch--complete--e-25b--q-Patterns--s-EcoliO157H7.out
• vmatch--d--p--l-300--e-4--showdesc-10-atEST.out
• vmatch--dbcluster-30-50--p--d--l-200--e-10--showdesc-0-atEST.out
• vmatch--dbcluster-30-50--p--d--l-200--e-10-atEST.out
• vmatch--dbcluster-30-50-CLatEST--s--p--d--l-200--e-10-atEST.out
• vmatch--dbnomatch-700--l-25--e-1-atEST.out
• vmatch--dbnomatch-10000--q-EcoliK12--l-18-EcoliO157H7.out
• vmatch--i--complete--e-25p--q-Patterns-EcoliO157H7.out
• vmatch--i--exdrop-5--l-4000--identity-85-EcoliO157H7.out
• vmatch--i--l-12-EcoliO157H7.out
• vmatch--i--l-2000-EcoliO157H7.out
• vmatch--l-12--s-Codonseq.6fr.out
• vmatch--l-20--s-90--dbmaskmatch-X-swissp.sp.gz.out
• vmatch--l-50-10-30-EcoliO157H7.out
• vmatch--l-70--q-EcoliK12--s-70--dbmaskmatch-tolower-EcoliO157H7.out
• vmatch--l-70--q-EcoliK12--s-70--qmaskmatch-tolower-EcoliO157H7.out
• vmatch--l-100--pp-matchcluster-erate-35-outprefix-clout-ychrIII.fna.out
• vmatch--l-100--pp-matchcluster-gapsize-1000-outprefix-clout-ychrIII.fna.out
• vmatch--l-100--pp-matchcluster-overlap-10-outprefix-clout-ychrIII.fna.out
• vmatch--l-100-ychrIII.fna.out
• vmatch--l-250--e-6--q-U89959--s-70-atEST.out
• vmatch--l-250--e-6--q-U89959--s-xml--showdesc-0-atEST.out
• vmatch--l-350--selfun-sel392.so-atEST.out
• vmatch--l-500--q-EcoliK12--pp-chain-global-EcoliO157H7.out
• vmatch--l-500--q-EcoliK12--pp-chain-local-2b-EcoliO157H7.out
• vmatch--mum--l-30--q-EcoliK12--best-10-EcoliO157H7.out
• vmatch--p--l-200--h-1--showdesc-10--s-60-atEST.out
• vmatch--p--l-230--hxdrop-3--s-60-leftseq-atEST.out
• vmatch--p--l-230--hxdrop-3--showdesc---s-abbrev-atEST.out
• vmatch--p--l-230--hxdrop-3--showdesc---s-abbreviub-atEST.out
• vmatch--p--l-379--exdrop-3--s-60-leftseq-atEST.out
• vmatch--p--l-1000--best-10--exdrop-1--sort-ld-EcoliO157H7.out
• vmatch--q-Codonseq.fna--dnavsprot-1--e-1--l-19--s-Proteinseq.out
• vmatch--qnomatch-10000--q-EcoliK12--l-18-EcoliO157H7.out
• vmatch--s--l-50--exdrop-2-Proteinseq.out
• vmatch--seedlength-20--exdrop-5--evalue-10e-100-EcoliO157H7.out
• vmatch--seedlength-20--exdrop-5--evalue-10e100-EcoliO157H7.out
• vmatch--supermax--l-2000-EcoliO157H7.out
• vmatch--tandem--l-50-EcoliO157H7.out
• vmatch--v--l-350-atEST.out
• vmatchselect--s-leftseq-clout.3.1.match.out
• vmerdistrib--output-unique-nonunique--mersizes-10-13-17-read1-read2.out
• vmerdistrib--output-unique-nonunique--minmersize-10--maxmersize-20-read1-read2.out
• vmerdistrib--output-unique-relative--minmersize-10--maxmersize-20-read1-read2.out
• vmersearch--output-qseqnum-qpos-counts-sequence-reads-U89959.fna.out
• vmerstat--mersize-19--minocc-4--indexname-reads--counts--pl-read1-read2.out
• vmerstat--mersize-19--minocc-40-read1-read2.out
• vseqinfo-atEST.out
• vseqselect--matchdesc-T46124.1-atEST.out
• vseqselect--randomlength-300--minlength-30--maxlength-99-atEST.out
• vseqselect--randomnum-3--minlength-100--maxlength-200-atEST.out
• vsubseqselect--minlength-30--maxlength-40--snum-5-atEST.out
• vsubseqselect--range-0-29-swissp.sp.gz.out
• zcat-swissp.sp.gz.out
• zcat.swiss.out