build.xml | 5 1 + 4 - 0 !
1 file changed, 1 insertion(+), 4 deletions(-)

 currently only the library is packaged while the web interface is ignored
 The rationale is that libalter-java is packaged as a dependency for
 other packages.  There was no explicite request to package the
 web interface which involves a lot of third party JARs and thus
 makes it complex to package.

alter-lib/build.xml | 4 2 + 2 - 0 !
1 file changed, 2 insertions(+), 2 deletions(-)

 use debian packaged jars

alter-lib/src/converter/ProgramOptions.java | 2 1 + 1 - 0 !
alter-lib/src/reader/ReaderUtils.java | 2 1 + 1 - 0 !
alter-lib/src/writer/FastaWriter.java | 2 1 + 1 - 0 !
alter-lib/src/writer/NexusWriter.java | 2 1 + 1 - 0 !
alter-lib/src/writer/PhylipCodABCWriter.java | 2 1 + 1 - 0 !
alter-lib/src/writer/PirDnaSPWriter.java | 4 2 + 2 - 0 !
alter-lib/src/writer/PirWriter.java | 4 2 + 2 - 0 !
alter-lib/src/writer/Writer.java | 2 1 + 1 - 0 !
8 files changed, 10 insertions(+), 10 deletions(-)

 build has problems with non-ascii characters in comments

alter-lib/build.xml | 2 1 + 1 - 0 !
1 file changed, 1 insertion(+), 1 deletion(-)

 resulting jar should have lower case name