Package: alter-sequence-alignment / 1.3.3+dfsg-1~bpo8+1

Metadata

Package Version Patches format
alter-sequence-alignment 1.3.3+dfsg-1~bpo8+1 3.0 (quilt)

Patch series

view the series file
Patch File delta Description
suppress_build_web_interface.patch | (download)

build.xml | 5 1 + 4 - 0 !
1 file changed, 1 insertion(+), 4 deletions(-)

 currently only the library is packaged while the web interface is ignored
 The rationale is that libalter-java is packaged as a dependency for
 other packages.  There was no explicite request to package the
 web interface which involves a lot of third party JARs and thus
 makes it complex to package.


use_debian_packaged_jar.patch | (download)

alter-lib/build.xml | 4 2 + 2 - 0 !
1 file changed, 2 insertions(+), 2 deletions(-)

 use debian packaged jars


fix_unmappable_characters.patch | (download)

alter-lib/src/converter/ProgramOptions.java | 2 1 + 1 - 0 !
alter-lib/src/reader/ReaderUtils.java | 2 1 + 1 - 0 !
alter-lib/src/writer/FastaWriter.java | 2 1 + 1 - 0 !
alter-lib/src/writer/NexusWriter.java | 2 1 + 1 - 0 !
alter-lib/src/writer/PhylipCodABCWriter.java | 2 1 + 1 - 0 !
alter-lib/src/writer/PirDnaSPWriter.java | 4 2 + 2 - 0 !
alter-lib/src/writer/PirWriter.java | 4 2 + 2 - 0 !
alter-lib/src/writer/Writer.java | 2 1 + 1 - 0 !
8 files changed, 10 insertions(+), 10 deletions(-)

 build has problems with non-ascii characters in comments


lower_case_jar.patch | (download)

alter-lib/build.xml | 2 1 + 1 - 0 !
1 file changed, 1 insertion(+), 1 deletion(-)

 resulting jar should have lower case name