Package: ampliconnoise / 1.29-9

Metadata

Package Version Patches format
ampliconnoise 1.29-9 3.0 (quilt)

Patch series

view the series file
Patch File delta Description
fix path for data.patch | (download)

Perseus/Perseus.h | 2 1 + 1 - 0 !
PyroDist/PyroDist.h | 2 1 + 1 - 0 !
PyroNoise/PyroNoise.h | 2 1 + 1 - 0 !
PyroNoiseM/PyroNoiseM.h | 2 1 + 1 - 0 !
SeqDist/SeqDist.h | 2 1 + 1 - 0 !
SeqNoise/SeqNoise.h | 2 1 + 1 - 0 !
6 files changed, 6 insertions(+), 6 deletions(-)

 
---
fix segfault on non fasta input.patch | (download)

FastaUnique/FastaUnique.c | 11 11 + 0 - 0 !
NDist/NDist.c | 11 11 + 0 - 0 !
Perseus/Perseus.c | 11 11 + 0 - 0 !
PerseusD/PerseusD.c | 11 11 + 0 - 0 !
SeqDist/SeqDist.c | 11 11 + 0 - 0 !
SeqNoise/SeqNoise.c | 11 11 + 0 - 0 !
6 files changed, 66 insertions(+)

 
---
hardening.patch | (download)

FCluster/makefile | 4 2 + 2 - 0 !
FastaUnique/makefile | 4 2 + 2 - 0 !
NDist/makefile | 4 2 + 2 - 0 !
Perseus/makefile | 4 2 + 2 - 0 !
PerseusD/makefile | 4 2 + 2 - 0 !
PyroDist/makefile | 4 2 + 2 - 0 !
PyroNoise/makefile | 4 2 + 2 - 0 !
PyroNoiseA/makefile | 2 1 + 1 - 0 !
PyroNoiseM/makefile | 4 2 + 2 - 0 !
SeqDist/makefile | 4 2 + 2 - 0 !
SeqNoise/makefile | 4 2 + 2 - 0 !
SplitClusterClust/makefile | 4 2 + 2 - 0 !
SplitClusterEven/makefile | 4 2 + 2 - 0 !
makefile | 26 13 + 13 - 0 !
14 files changed, 38 insertions(+), 38 deletions(-)

 
 propagate hardening options
clang ftbfs.patch | (download)

FCluster/FCluster.c | 2 1 + 1 - 0 !
SplitClusterEven/SplitClusterEven.c | 4 2 + 2 - 0 !
2 files changed, 3 insertions(+), 3 deletions(-)

 
 fix ftbfs with clang instead of gcc
mayhem.patch | (download)

Perseus/Perseus.c | 5 5 + 0 - 0 !
PerseusD/PerseusD.c | 5 5 + 0 - 0 !
SeqNoise/SeqNoise.c | 15 15 + 0 - 0 !
3 files changed, 25 insertions(+)

 
 fix mayhem issues by 
 making reading fasta files more robust