Package: apbs / 3.4.1-7

Metadata

Package Version Patches format
apbs 3.4.1-7 3.0 (quilt)

Patch series

view the series file
Patch File delta Description
wrong path for interpreter.patch | (download)

examples/protein-rna/apbs_dx.py | 2 1 + 1 - 0 !
examples/protein-rna/fit.py | 2 1 + 1 - 0 !
tests/apbs_check_forces.py | 2 1 + 1 - 0 !
tests/apbs_check_intermediate_energies.py | 2 1 + 1 - 0 !
tests/apbs_check_results.py | 2 1 + 1 - 0 !
tests/apbs_logger.py | 2 1 + 1 - 0 !
tests/apbs_tester.py | 2 1 + 1 - 0 !
tools/python/noinput.py | 2 1 + 1 - 0 !
8 files changed, 8 insertions(+), 8 deletions(-)

 fix lintian warning
  The script uses the wrong interpreter path so lintian complains with
  wrong-path-for-interpreter.

debian_testfiles.patch | (download)

tests/apbs_tester.py | 6 4 + 2 - 0 !
tests/test_cases.cfg | 72 36 + 36 - 0 !
2 files changed, 40 insertions(+), 38 deletions(-)

 don't run very expensive tests. this has been done
 for a while via debian/patches/03_skip_expensive_tests.patch.
 .
 Fix test script to get the directories right.

fix_spelling_errors.patch | (download)

src/generic/mgparm.c | 2 1 + 1 - 0 !
src/generic/pbeparm.c | 2 1 + 1 - 0 !
tools/conversion/param/pdb2pqr/c-alpha.dat | 2 1 + 1 - 0 !
3 files changed, 3 insertions(+), 3 deletions(-)

 fix spelling-error-in-binary lintian warnings

shared_library_soname.patch | (download)

src/CMakeLists.txt | 1 1 + 0 - 0 !
1 file changed, 1 insertion(+)

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python3.patch | (download)

examples/protein-rna/postprocess.sh | 4 2 + 2 - 0 !
tools/python/CMakeLists.txt | 28 15 + 13 - 0 !
2 files changed, 17 insertions(+), 15 deletions(-)

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cmake.patch | (download)

CMakeLists.txt | 14 7 + 7 - 0 !
cmake/ImportFETK.cmake | 1 1 + 0 - 0 !
src/CMakeLists.txt | 2 1 + 1 - 0 !
tools/python/CMakeLists.txt | 2 1 + 1 - 0 !
4 files changed, 10 insertions(+), 9 deletions(-)

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docs.patch | (download)

docs/Doxyfile | 2 1 + 1 - 0 !
docs/conf.py | 3 1 + 2 - 0 !
2 files changed, 2 insertions(+), 3 deletions(-)

---
open U obsolete.patch | (download)

tools/manip/inputgen.py | 2 1 + 1 - 0 !
1 file changed, 1 insertion(+), 1 deletion(-)

 drop obsolete "u" mode passed to open()
 The "U" mode has been deprecated in python since python3 and has had no
 effect.  In python 3.11, it is now disallowed.  Drop this mode flag that
 causes runtime failures.
gcc14.patch | (download)

src/fem/vfetk.c | 8 4 + 4 - 0 !
src/fem/vfetk.h | 21 14 + 7 - 0 !
2 files changed, 18 insertions(+), 11 deletions(-)

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