Package: arb / 6.0.6-4

Metadata

Package Version Patches format
arb 6.0.6-4 3.0 (quilt)

Patch series

view the series file
Patch File delta Description
10_upstream_r12793__show_db_load_progress | (download)

ARBDB/ad_load.cxx | 27 20 + 7 - 0 !
CORE/arb_progress.cxx | 8 8 + 0 - 0 !
CORE/arb_progress.h | 3 3 + 0 - 0 !
3 files changed, 31 insertions(+), 7 deletions(-)

show progress while arb is loading a database
 (needed as indicator/splash screen while ARB is launching)
20_upstream_r12794__socket_permissions | (download)

SH/arb_launcher | 7 4 + 3 - 0 !
1 file changed, 4 insertions(+), 3 deletions(-)

 backported security fix
30_upstream_r12814__desktop_keywords | (download)

lib/desktop/arb.desktop | 2 1 + 1 - 0 !
1 file changed, 1 insertion(+), 1 deletion(-)

 add keywords to arb.desktop
40_upstream_r12815__lintian_spelling | (download)

ARBDB/adGene.cxx | 2 1 + 1 - 0 !
ARBDB/adsocket.cxx | 2 1 + 1 - 0 !
ARB_GDE/GDE_event.cxx | 2 1 + 1 - 0 !
CORE/arb_progress.h | 4 2 + 2 - 0 !
CORE/arb_strarray.cxx | 2 1 + 1 - 0 !
GDE/CLUSTAL/amenu.c | 6 3 + 3 - 0 !
GDE/CLUSTALW/interface.c | 2 1 + 1 - 0 !
GENOM/GEN_gene.cxx | 6 3 + 3 - 0 !
NTREE/NT_tree_cmp.cxx | 2 1 + 1 - 0 !
PRIMER_DESIGN/primer_design.cxx | 2 1 + 1 - 0 !
SL/FAST_ALIGNER/fast_aligner.cxx | 2 1 + 1 - 0 !
STAT/st_quality.hxx | 2 1 + 1 - 0 !
TOOLS/arb_consensus_tree.cxx | 2 1 + 1 - 0 !
TOOLS/arb_gene_probe.cxx | 28 14 + 14 - 0 !
WINDOW/AW_xfig.cxx | 2 1 + 1 - 0 !
15 files changed, 33 insertions(+), 33 deletions(-)

 fix lintian detected spelling errors
50_private_nameservers | (download)

lib/arb_tcp_org.dat | 10 3 + 7 - 0 !
1 file changed, 3 insertions(+), 7 deletions(-)

 change nameservers to be per-user
 By default, ARB shares one "name server" database across an installation.
 This is historical and no longer a useful default for "unadministered" 
 use of ARB. The patch changes the config to create separate name databases
 for each user, avoiding the necessity for a directory writeable by all
 ARB users.
60_use_packaged_phyml | (download)

GDE/Makefile | 2 1 + 1 - 0 !
GDEHELP/MENUS/phyml_20130708.menu | 2 1 + 1 - 0 !
2 files changed, 2 insertions(+), 2 deletions(-)

 use phyml package instead of version source distributed with arb
70_skip_compler_version_check.patch | (download)

Makefile | 19 1 + 18 - 0 !
1 file changed, 1 insertion(+), 18 deletions(-)

 skip compiler version check at all
80_enable_new_dtags.patch | (download)

Makefile | 4 2 + 2 - 0 !
1 file changed, 2 insertions(+), 2 deletions(-)

---
90_do_not_create_MAFFT_symlinks.patch | (download)

bin/Makefile | 4 2 + 2 - 0 !
1 file changed, 2 insertions(+), 2 deletions(-)

 do not create mafft symlinks