Package: barclay / 4.1.0+dfsg-1

Metadata

Package Version Patches format
barclay 4.1.0+dfsg-1 3.0 (quilt)

Patch series

view the series file
Patch File delta Description
fix_debian_build.patch | (download)

build.gradle | 29 20 + 9 - 0 !
1 file changed, 20 insertions(+), 9 deletions(-)

 patching build.gradle to perform a build with debian packages
fix_deprecation.patch | (download)

src/main/java/org/broadinstitute/barclay/argparser/LegacyCommandLineArgumentParser.java | 2 1 + 1 - 0 !
src/test/java/org/broadinstitute/barclay/help/DefaultDocWorkUnitHandlerUnitTest.java | 91 1 + 90 - 0 !
src/test/java/org/broadinstitute/barclay/help/DocWorkUnitTest.java | 6 3 + 3 - 0 !
3 files changed, 5 insertions(+), 94 deletions(-)

 some method calls are deprecated in jdk 9, leading to error
 this patch update method calls.
 Additionally, for testing, some methods cannot be mocked (sun doc), so
 removing those tests
Last-Updated: 2018-05-03
fix_dataprovider.patch | (download)

src/test/java/org/broadinstitute/barclay/argparser/CommandLineArgumentParserTest.java | 8 0 + 8 - 0 !
1 file changed, 8 deletions(-)

---
com_sun_javadoc_removal_in_openjdk17.patch | (download)

build.gradle | 28 28 + 0 - 0 !
1 file changed, 28 insertions(+)

 omitting the build of classes that use deprecated
 com.sun.javadoc package, which disappears in OpenJDK 17.
ignore_flaky_tests.patch | (download)

src/test/java/org/broadinstitute/barclay/argparser/CommandLinePluginUnitTest.java | 10 6 + 4 - 0 !
1 file changed, 6 insertions(+), 4 deletions(-)

 4 tests are failing or succeeding, depending on machines. i
 forward the issue upstream.