| Patch |
File delta |
Description |
| enable_hardening.patch | (download) |
native/Makefile.linux |
6 3 + 3 - 0 !
1 file changed, 3 insertions(+), 3 deletions(-) |
enable propagation of hardening flags
|
| fix_classpath_in_build_xml.patch | (download) |
.classpath |
37 22 + 15 - 0 !
build.xml |
42 26 + 16 - 0 !
2 files changed, 48 insertions(+), 31 deletions(-) |
make sure package builds with debian packages jars
|
| create_soname.patch | (download) |
native/Makefile.linux |
6 3 + 3 - 0 !
1 file changed, 3 insertions(+), 3 deletions(-) |
create soname for library
|
| fix_encoding.patch | (download) |
src/dr/app/beauti/components/discrete/DiscreteTraitsComponentGenerator.java |
2 1 + 1 - 0 !
1 file changed, 1 insertion(+), 1 deletion(-) |
fix encoding issue
|
| ignore_mac_install.patch | (download) |
build.xml |
2 1 + 1 - 0 !
1 file changed, 1 insertion(+), 1 deletion(-) |
do not try to install mac and windows build
|
| update ejml.patch | (download) |
src/dr/evomodel/treedatalikelihood/continuous/IntegratedFactorAnalysisLikelihood.java |
18 9 + 9 - 0 !
src/dr/evomodel/treedatalikelihood/continuous/RepeatedMeasuresTraitLikelihood.java |
18 9 + 9 - 0 !
src/dr/evomodel/treedatalikelihood/continuous/cdi/ContinuousDiffusionIntegrator.java |
38 19 + 19 - 0 !
src/dr/evomodel/treedatalikelihood/continuous/cdi/MultivariateIntegrator.java |
150 75 + 75 - 0 !
src/dr/evomodel/treedatalikelihood/continuous/cdi/SafeMultivariateIntegrator.java |
230 115 + 115 - 0 !
src/dr/evomodel/treedatalikelihood/continuous/cdi/SafeMultivariateWithDriftIntegrator.java |
98 49 + 49 - 0 !
src/dr/evomodel/treedatalikelihood/preorder/AbstractValuesViaFullConditionalDelegate.java |
4 2 + 2 - 0 !
src/dr/evomodel/treedatalikelihood/preorder/ConditionalVarianceAndTransform2.java |
42 21 + 21 - 0 !
src/dr/evomodel/treedatalikelihood/preorder/MultivariateConditionalOnTipsRealizedDelegate.java |
58 29 + 29 - 0 !
src/dr/evomodel/treedatalikelihood/preorder/ProcessSimulationDelegate.java |
8 4 + 4 - 0 !
src/dr/inferencexml/operators/EllipticalSliceOperatorParser.java |
2 1 + 1 - 0 !
src/dr/math/matrixAlgebra/missingData/MissingOps.java |
104 52 + 52 - 0 !
12 files changed, 385 insertions(+), 385 deletions(-) |
migrating to libejml-java v0.38.
|
