| Patch |
File delta |
Description |
| gzstream.h.patch | (download) |
src/utils/gzstream/gzstream.C |
2 1 + 1 - 0 !
1 file changed, 1 insertion(+), 1 deletion(-) |
to find gzstream.h during debian package building.
|
| fix_test_script.patch | (download) |
test/merge/test-merge.sh |
2 1 + 1 - 0 !
1 file changed, 1 insertion(+), 1 deletion(-) |
use environment variable to find bedtools in all cases
|
| remove_barski_binding_site.png.patch | (download) |
docs/content/tools/genomecov.rst |
7 2 + 5 - 0 !
1 file changed, 2 insertions(+), 5 deletions(-) |
---
|
| reproducible_build.patch | (download) |
Makefile |
2 1 + 1 - 0 !
1 file changed, 1 insertion(+), 1 deletion(-) |
enable reproducible builds
|
| louder | (download) |
src/annotateBed/Makefile |
2 1 + 1 - 0 !
src/bamToBed/Makefile |
2 1 + 1 - 0 !
src/bamToFastq/Makefile |
2 1 + 1 - 0 !
src/bed12ToBed6/Makefile |
2 1 + 1 - 0 !
src/bedToBam/Makefile |
2 1 + 1 - 0 !
src/bedToIgv/Makefile |
2 1 + 1 - 0 !
src/bedpeToBam/Makefile |
2 1 + 1 - 0 !
src/closestFile/Makefile |
2 1 + 1 - 0 !
src/clusterBed/Makefile |
4 2 + 2 - 0 !
src/complementFile/Makefile |
2 1 + 1 - 0 !
src/coverageFile/Makefile |
2 1 + 1 - 0 !
src/expand/Makefile |
2 1 + 1 - 0 !
src/fastaFromBed/Makefile |
2 1 + 1 - 0 !
src/fisher/Makefile |
2 1 + 1 - 0 !
src/flankBed/Makefile |
2 1 + 1 - 0 !
src/genomeCoverageBed/Makefile |
2 1 + 1 - 0 !
src/getOverlap/Makefile |
2 1 + 1 - 0 !
src/groupBy/Makefile |
2 1 + 1 - 0 !
src/intersectFile/Makefile |
2 1 + 1 - 0 !
src/jaccard/Makefile |
2 1 + 1 - 0 !
src/linksBed/Makefile |
4 2 + 2 - 0 !
src/mapFile/Makefile |
2 1 + 1 - 0 !
src/maskFastaFromBed/Makefile |
2 1 + 1 - 0 !
src/mergeFile/Makefile |
4 2 + 2 - 0 !
src/multiBamCov/Makefile |
2 1 + 1 - 0 !
src/multiIntersectBed/Makefile |
2 1 + 1 - 0 !
src/nekSandbox1/Makefile |
2 1 + 1 - 0 !
src/nucBed/Makefile |
4 2 + 2 - 0 !
src/pairToBed/Makefile |
2 1 + 1 - 0 !
src/pairToPair/Makefile |
2 1 + 1 - 0 !
src/randomBed/Makefile |
2 1 + 1 - 0 !
src/regressTest/Makefile |
4 2 + 2 - 0 !
src/reldist/Makefile |
2 1 + 1 - 0 !
src/sampleFile/Makefile |
2 1 + 1 - 0 !
src/shiftBed/Makefile |
2 1 + 1 - 0 !
src/shuffleBed/Makefile |
2 1 + 1 - 0 !
src/slopBed/Makefile |
2 1 + 1 - 0 !
src/sortBed/Makefile |
4 2 + 2 - 0 !
src/spacingFile/Makefile |
2 1 + 1 - 0 !
src/split/Makefile |
2 1 + 1 - 0 !
src/subtractFile/Makefile |
2 1 + 1 - 0 !
src/tagBam/Makefile |
2 1 + 1 - 0 !
src/unionBedGraphs/Makefile |
2 1 + 1 - 0 !
src/utils/BamTools-Ancillary/Makefile |
4 2 + 2 - 0 !
src/utils/BamTools/Makefile |
2 1 + 1 - 0 !
src/utils/BinTree/Makefile |
4 2 + 2 - 0 !
src/utils/BlockedIntervals/Makefile |
2 1 + 1 - 0 !
src/utils/Contexts/Makefile |
2 1 + 1 - 0 !
src/utils/Fasta/Makefile |
2 1 + 1 - 0 !
src/utils/FileRecordTools/FileReaders/Makefile |
2 1 + 1 - 0 !
src/utils/FileRecordTools/Makefile |
4 2 + 2 - 0 !
src/utils/FileRecordTools/Records/Makefile |
4 2 + 2 - 0 !
src/utils/GenomeFile/Makefile |
4 2 + 2 - 0 !
src/utils/KeyListOps/Makefile |
4 2 + 2 - 0 !
src/utils/NewChromsweep/Makefile |
4 2 + 2 - 0 !
src/utils/RecordOutputMgr/Makefile |
4 2 + 2 - 0 !
src/utils/ToolBase/Makefile |
4 2 + 2 - 0 !
src/utils/VectorOps/Makefile |
4 2 + 2 - 0 !
src/utils/bedFile/Makefile |
4 2 + 2 - 0 !
src/utils/bedFilePE/Makefile |
4 2 + 2 - 0 !
src/utils/bedGraphFile/Makefile |
2 1 + 1 - 0 !
src/utils/chromsweep/Makefile |
4 2 + 2 - 0 !
src/utils/driver/Makefile |
2 1 + 1 - 0 !
src/utils/fileType/Makefile |
4 2 + 2 - 0 !
src/utils/general/Makefile |
2 1 + 1 - 0 !
src/utils/sequenceUtilities/Makefile |
4 2 + 2 - 0 !
src/utils/tabFile/Makefile |
4 2 + 2 - 0 !
src/utils/version/Makefile |
2 1 + 1 - 0 !
src/windowBed/Makefile |
2 1 + 1 - 0 !
src/windowMaker/Makefile |
2 1 + 1 - 0 !
70 files changed, 92 insertions(+), 92 deletions(-) |
print compilation commands
|
| flag_no_overwrite | (download) |
Makefile |
4 2 + 2 - 0 !
src/complementFile/Makefile |
2 1 + 1 - 0 !
src/coverageFile/Makefile |
2 1 + 1 - 0 !
src/subtractFile/Makefile |
2 1 + 1 - 0 !
src/utils/ToolBase/Makefile |
2 1 + 1 - 0 !
src/utils/driver/Makefile |
2 1 + 1 - 0 !
6 files changed, 7 insertions(+), 7 deletions(-) |
don't overwrite cxxflags & include missing cppflags as needed
|
