Package: bedtools / 2.30.0+dfsg-1

Metadata

Package Version Patches format
bedtools 2.30.0+dfsg-1 3.0 (quilt)

Patch series

view the series file
Patch File delta Description
gzstream.h.patch | (download)

src/utils/gzstream/gzstream.C | 2 1 + 1 - 0 !
1 file changed, 1 insertion(+), 1 deletion(-)

 to find gzstream.h during debian package building.
remove_barski_binding_site.png.patch | (download)

docs/content/tools/genomecov.rst | 7 2 + 5 - 0 !
1 file changed, 2 insertions(+), 5 deletions(-)

---
2to3.patch | (download)

Makefile | 2 1 + 1 - 0 !
docs/conf.py | 10 5 + 5 - 0 !
src/utils/BamTools/Makefile.frag | 2 1 + 1 - 0 !
test/bigchroms/test-bigchroms.sh | 2 1 + 1 - 0 !
test/fisher/README.md | 2 1 + 1 - 0 !
test/fisher/cmp.sh | 2 1 + 1 - 0 !
test/fisher/sim.py | 4 2 + 2 - 0 !
7 files changed, 12 insertions(+), 12 deletions(-)

 use 2to3 to port to python3
Bug-Debian: https://bugs.debian.org/936199
hardening | (download)

Makefile | 4 2 + 2 - 0 !
src/utils/htslib/Makefile | 12 5 + 7 - 0 !
2 files changed, 7 insertions(+), 9 deletions(-)

 improve build flexibility

Improves hardening and enable cross building

htsutil | (download)

Makefile | 4 2 + 2 - 0 !
src/bedtools.cpp | 2 2 + 0 - 0 !
src/htsutil.cpp | 2 1 + 1 - 0 !
3 files changed, 5 insertions(+), 3 deletions(-)

 minimal change to make htsutil a bedtools subcommand
 Inline the test tool htsutil into bedtools to reduce the memory footprint of
 the bedtools package.  Details initially discussed on Debian Med mailing list:
 .
 https://lists.debian.org/debian-med/2021/01/msg00189.html