biojava3-ws/src/main/java/org/biojava3/ws/hmmer/RemoteHmmerScan.java | 22 11 + 11 - 0 !
1 file changed, 11 insertions(+), 11 deletions(-)

 json.org library is not "free", use simple_json
 library and update according to API
Last-Updated: 30/05/12

biojava3-structure-gui/src/main/java/org/biojava/bio/structure/align/gui/jmol/MyJmolStatusListener.java | 13 12 + 1 - 0 !
1 file changed, 12 insertions(+), 1 deletion(-)

 add required interface method from latest jmol library definition
Last--Updated: 29/05/12

biojava3-forester/src/main/java/org/forester/archaeopteryx/Blast.java | 2 1 + 1 - 0 !
1 file changed, 1 insertion(+), 1 deletion(-)

 unmappable character for encoding ascii