Package: bowtie / 1.2.2+dfsg-4

bowtie_ContextLss-1.1-1.4.patch Patch series | download
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Description: Change class name of _Context_LSS
 New version 1.4 of SeQan uses a different name of the class. 
Forwarded: no
Author: Gert Wollny <gw.fossdev@gmail.com>
Last-Update: 2014-100-06

--- a/diff_sample.h
+++ b/diff_sample.h
@@ -982,7 +982,7 @@ void DifferenceCoverSample<TStr>::build(
 	{
 		Timer timer(cout, "  Invoking Larsson-Sadakane on ranks time: ", this->verbose());
 		VMSG_NL("  Invoking Larsson-Sadakane on ranks");
-		_Context_LSS<TIndexOff> c;
+		ContextLss_<TIndexOff> c;
 		c.suffixsort(
 			(TIndexOff*)begin(_isaPrime, Standard()),
 			(TIndexOff*)begin(sPrime, Standard()),