Package: bowtie / 1.2.2+dfsg-4

seqan-popcount.patch Patch series | download
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Description: Use SeqAn 1.4's seqan::popCount() function instead of own function
Author: Ognyan Kulev <ogi@debian.org>
Last-Update: 2014-03-08
---
This patch header follows DEP-3: http://dep.debian.net/deps/dep3/
--- a/diff_sample.h
+++ b/diff_sample.h
@@ -481,6 +481,8 @@ static String<T> getDeltaMap(T v, const
 	return amap;
 }
 
+// Debian: Use seqan::popCount
+#if 0
 /**
  * Return population count (count of all bits set to 1) of i.
  */
@@ -493,6 +495,7 @@ static unsigned int popCount(T i) {
 	}
 	return cnt;
 }
+#endif
 
 /**
  * Calculate log-base-2 of i