Package: bowtie / 1.2.2+dfsg-4

use_debian_seqan.patch Patch series | download
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Description: Use Debian packaged SeqAn library instead of copy in upstream source
Author: Andreas Tille <tille@debian.org>
Date: 2011-01-30
Last-Update: 2013-04-18
Reviewed-by: Ognyan Kulev <ogi@debian.org>

--- bowtie.orig/Makefile
+++ bowtie/Makefile
@@ -5,7 +5,7 @@
 prefix = /usr/local
 bindir = $(prefix)/bin
 
-SEQAN_DIR = ./SeqAn-1.1
+SEQAN_DIR = /usr/include/seqan
 # treat SeqAn as a sysdir to suppress warnings
 SEQAN_INC = -isystem $(SEQAN_DIR)
 INC = $(if $(RELEASE_BUILD),-I$(CURDIR)/.include) $(SEQAN_INC) -I third_party
@@ -207,7 +207,6 @@
                $(wildcard genomes/NC_008253.fna) \
                $(wildcard reads/e_coli_1000.*) \
                $(wildcard reads/e_coli_1000_*) \
-               SeqAn-1.1 \
                bowtie \
                bowtie-build \
                bowtie-inspect \