src/pipelines/canu/OverlapMhap.pm | 4 2 + 2 - 0 !
1 file changed, 2 insertions(+), 2 deletions(-)

 use mhap jar from /usr/share/java

src/Makefile | 1 0 + 1 - 0 !
1 file changed, 1 deletion(-)

 don't expect bundled mhap
 the jar file has been removd from the Debian source.

src/Makefile | 1 1 + 0 - 0 !
src/main.mk | 4 0 + 4 - 0 !
src/meryl/src/Makefile | 1 1 + 0 - 0 !
src/seqrequester/src/Makefile | 1 1 + 0 - 0 !
src/utility/src/Makefile | 1 1 + 0 - 0 !
5 files changed, 4 insertions(+), 4 deletions(-)

 use system package for snappy

src/Makefile | 11 1 + 10 - 0 !
src/main.mk | 18 0 + 18 - 0 !
src/meryl/src/Makefile | 9 0 + 9 - 0 !
src/seqrequester/src/Makefile | 9 0 + 9 - 0 !
src/utility/src/Makefile | 9 0 + 9 - 0 !
src/utility/src/utility/system-stackTrace.C | 2 1 + 1 - 0 !
6 files changed, 2 insertions(+), 56 deletions(-)

 ignore broken gcc version check

src/bogart/bogart.C | 2 1 + 1 - 0 !
src/gfa/alignGFA.C | 2 1 + 1 - 0 !
src/gfa/gfa.C | 2 1 + 1 - 0 !
src/overlapBasedTrimming/splitReads.C | 2 1 + 1 - 0 !
src/overlapBasedTrimming/trimReads.C | 2 1 + 1 - 0 !
src/overlapInCore/overlapInCorePartition.C | 2 1 + 1 - 0 !
src/stores/ovStore.C | 2 1 + 1 - 0 !
src/utility/src/utility/intervalList.H | 4 2 + 2 - 0 !
8 files changed, 9 insertions(+), 9 deletions(-)

 typo fixes

src/utility/src/parasail/cpuid.c | 100 84 + 16 - 0 !
1 file changed, 84 insertions(+), 16 deletions(-)

 enable cpuid on arm64, pcc64el, and other architectures