Package: capsule-maven-nextflow / 1.0.3.1+dfsg-5

Metadata

Package Version Patches format
capsule-maven-nextflow 1.0.3.1+dfsg-5 3.0 (quilt)

Patch series

view the series file
Patch File delta Description
build.patch | (download)

build.gradle | 24 12 + 12 - 0 !
1 file changed, 12 insertions(+), 12 deletions(-)

 patching build.gradle to perform a debian build
avoid_takari_classes.patch | (download)

src/main/java/capsule/DependencyManager.java | 8 4 + 4 - 0 !
1 file changed, 4 insertions(+), 4 deletions(-)

 remove the need for unavailable takari classes
 The repository of takari classes for filemanager has been removed, so I delete
 all calls to them... This only amounts to give up concurrent downloading of
 dependencies.
correct_DefaultSettingsDecrypterInvocation.patch | (download)

src/main/java/capsule/UserSettings.java | 2 1 + 1 - 0 !
1 file changed, 1 insertion(+), 1 deletion(-)

 provide correct argument for defaultsettingsdecrypter constructor
 This constructor needs a SecDispatcher.
mockito_argument.patch | (download)

src/test/java/MavenCapsuleTest.java | 2 1 + 1 - 0 !
1 file changed, 1 insertion(+), 1 deletion(-)

 correcting the first argument of dm.resolvedependencies
 This argument needs to be a List<String>, not a List<Object>.
DefaultPlexusCipher_no_except.patch | (download)

src/main/java/capsule/UserSettings.java | 6 1 + 5 - 0 !
1 file changed, 1 insertion(+), 5 deletions(-)

 starting from version 2.0 of plexus-cipher, the constructor of
 DefaultPlexusCipher does not throw any exception.
skip_tests_touching_security_sensitive_fields.patch | (download)

src/test/java/MavenCapsuleTest.java | 2 2 + 0 - 0 !
1 file changed, 2 insertions(+)

 many tests attempt to touch security sensitive fields, which has
 been disabled from OpenJDK12, see
 https://bugs.openjdk.org/browse/JDK-8210522
 We disable all the these tests.