Package: centrifuge / 1.0.3-8

Metadata

Package Version Patches format
centrifuge 1.0.3-8 3.0 (quilt)

Patch series

view the series file
Patch File delta Description
fix_auto_ptr_usage_in_gcc 7.patch | (download)

bt2_idx.h | 4 2 + 2 - 0 !
centrifuge.cpp | 8 4 + 4 - 0 !
2 files changed, 6 insertions(+), 6 deletions(-)

 fix usage of auto_ptr
 see https://lists.debian.org/debian-mentors/2017/11/msg00193.html


0002 Fix build with rank.patch | (download)

classifier.h | 2 1 + 1 - 0 !
1 file changed, 1 insertion(+), 1 deletion(-)

 fix build with rank


0003 Fix make install DESTDIR.patch | (download)

Makefile | 16 8 + 8 - 0 !
1 file changed, 8 insertions(+), 8 deletions(-)

 fix make install destdir


hardening.patch | (download)

Makefile | 5 3 + 2 - 0 !
1 file changed, 3 insertions(+), 2 deletions(-)

 propagate hardening options


no_msse2.patch | (download)

Makefile | 2 1 + 1 - 0 !
1 file changed, 1 insertion(+), 1 deletion(-)

 -msse2 is already enabled by default on amd64 (which is the only 
    architecture the package runs anyway)
Bug-Debian: https://bugs.debian.org/890378
2to3.patch | (download)

Makefile | 4 2 + 2 - 0 !
centrifuge-build | 2 1 + 1 - 0 !
centrifuge-inspect | 2 1 + 1 - 0 !
evaluation/centrifuge_evaluate.py | 44 22 + 22 - 0 !
evaluation/centrifuge_simulate_reads.py | 46 23 + 23 - 0 !
evaluation/test/centrifuge_evaluate_mason.py | 44 22 + 22 - 0 !
6 files changed, 71 insertions(+), 71 deletions(-)

 use 2to3 to port to python3
Bug-Debian: https://bugs.debian.org/936281
fix_arm_build.patch | (download)

alphabet.cpp | 2 1 + 1 - 0 !
alphabet.h | 2 1 + 1 - 0 !
2 files changed, 2 insertions(+), 2 deletions(-)

 char needs to be declared signed if negative values are assigned