Package: circos / 0.69.9+dfsg-2

Metadata

Package Version Patches format
circos 0.69.9+dfsg-2 3.0 (quilt)

Patch series

view the series file
Patch File delta Description
use_ttf_fonts | (download)

etc/fonts.conf | 44 22 + 22 - 0 !
1 file changed, 22 insertions(+), 22 deletions(-)

 fonts-cmu use ttf, so update conf accordingly
configpath_add_etc | (download)

etc/makehuesteps | 2 1 + 1 - 0 !
lib/Circos/Configuration.pm | 1 1 + 0 - 0 !
lib/Circos/Utils.pm | 2 1 + 1 - 0 !
3 files changed, 3 insertions(+), 2 deletions(-)

 add debian directories in search path
fix_examples | (download)

example/etc/circos.conf | 12 6 + 6 - 0 !
example/run | 2 1 + 1 - 0 !
2 files changed, 7 insertions(+), 7 deletions(-)

 etc sub directory is hard coded 
 in example conf files. In Debian conf files are
 in /etc/circos. This path is already added to search
 path.
fix_manpage | (download)

lib/Circos.pm | 4 2 + 2 - 0 !
1 file changed, 2 insertions(+), 2 deletions(-)

 perl file used as source for man page contains errors.
fix_pod_syntax.patch | (download)

bin/circos | 2 2 + 0 - 0 !
1 file changed, 2 insertions(+)

 add missing over which should fix
   =back without =over
 when creating manpages


fix_config_path.patch | (download)

bin/circos | 16 8 + 8 - 0 !
etc/brewer.conf | 2 1 + 1 - 0 !
etc/colors_fonts_patterns.conf | 8 4 + 4 - 0 !
etc/gddiag.conf | 4 2 + 2 - 0 !
etc/housekeeping.conf | 2 1 + 1 - 0 !
example/etc/circos.conf | 22 11 + 11 - 0 !
example/etc/highlights.conf | 4 2 + 2 - 0 !
example/etc/karyotype.and.layout.conf | 2 1 + 1 - 0 !
example/etc/mmchain.conf | 2 1 + 1 - 0 !
example/etc/mmchain.scatter.conf | 2 1 + 1 - 0 !
example/etc/mmchain.text.conf | 2 1 + 1 - 0 !
example/etc/rnchain.conf | 2 1 + 1 - 0 !
example/etc/rnchain.scatter.conf | 2 1 + 1 - 0 !
lib/Circos/Error.pm | 2 1 + 1 - 0 !
14 files changed, 36 insertions(+), 36 deletions(-)

 fix config path
Bug-Debian: https://bugs.debian.org/962247