setup.py | 2 1 + 1 - 0 !
1 file changed, 1 insertion(+), 1 deletion(-)

 remove .py extensions as per debian policy

cnvkit.py | 2 1 + 1 - 0 !
scripts/cnv_annotate.py | 2 1 + 1 - 0 !
scripts/cnv_expression_correlate.py | 2 1 + 1 - 0 !
scripts/cnv_updater.py | 2 1 + 1 - 0 !
scripts/guess_baits.py | 2 1 + 1 - 0 !
scripts/reference2targets.py | 2 1 + 1 - 0 !
scripts/skg_convert.py | 2 1 + 1 - 0 !
test/Makefile | 14 8 + 6 - 0 !
test/test_cnvlib.py | 2 1 + 1 - 0 !
test/test_genome.py | 2 1 + 1 - 0 !
test/test_io.py | 2 1 + 1 - 0 !
test/test_r.py | 2 1 + 1 - 0 !
12 files changed, 19 insertions(+), 17 deletions(-)

 enable building with python3

cnvlib/commands.py | 4 2 + 2 - 0 !
1 file changed, 2 insertions(+), 2 deletions(-)

 fix typos

cnvlib/commands.py | 5 3 + 2 - 0 !
1 file changed, 3 insertions(+), 2 deletions(-)

 command tries to create an output dir during tests, even if it
 already exists, raising an error. Skip creation if already present