Package: cwltool / 1.0.20181217162649+dfsg-10

Metadata

Package Version Patches format
cwltool 1.0.20181217162649+dfsg-10 3.0 (quilt)

Patch series

view the series file
Patch File delta Description
add exec line | (download)

tests/override/env-tool.cwl | 1 1 + 0 - 0 !
tests/override/env-tool_v1.1.0-dev1.cwl | 1 1 + 0 - 0 !
tests/test_pack.py | 5 3 + 2 - 0 !
tests/utf_doc_example.cwl | 1 1 + 0 - 0 !
tests/wf/910.cwl | 1 1 + 0 - 0 !
tests/wf/count-lines1-wf.cwl | 1 1 + 0 - 0 !
tests/wf/default-dir5.cwl | 3 2 + 1 - 0 !
tests/wf/default-wf5.cwl | 3 2 + 1 - 0 !
tests/wf/expect_packed.cwl | 1 1 + 0 - 0 !
tests/wf/malformed_outputs.cwl | 1 1 + 0 - 0 !
tests/wf/networkaccess-fail.cwl | 3 2 + 1 - 0 !
tests/wf/networkaccess.cwl | 3 2 + 1 - 0 !
tests/wf/sec-tool.cwl | 3 2 + 1 - 0 !
tests/wf/sec-wf-out.cwl | 1 1 + 0 - 0 !
tests/wf/sec-wf.cwl | 1 1 + 0 - 0 !
tests/wf/secret_job.cwl | 1 1 + 0 - 0 !
tests/wf/secret_wf.cwl | 1 1 + 0 - 0 !
tests/wf/separate_without_prefix.cwl | 1 1 + 0 - 0 !
tests/wf/timelimit-fail.cwl | 1 1 + 0 - 0 !
tests/wf/timelimit.cwl | 1 1 + 0 - 0 !
tests/wf/trick_defaults.cwl | 3 2 + 1 - 0 !
tests/wf/vf-concat.cwl | 1 1 + 0 - 0 !
tests/wf/workreuse-fail.cwl | 3 2 + 1 - 0 !
tests/wf/workreuse.cwl | 3 2 + 1 - 0 !
24 files changed, 34 insertions(+), 10 deletions(-)

 add #!/usr/bin/env cwl-runner to *.cwl
no_ruamel.yaml_version_check.patch | (download)

setup.py | 2 1 + 1 - 0 !
1 file changed, 1 insertion(+), 1 deletion(-)

 drop unneeded ruamel.yaml version check
Bug-Debian: https://bugs.debian.org/882437
scandir | (download)

cwltool/process.py | 5 1 + 4 - 0 !
requirements.txt | 1 0 + 1 - 0 !
setup.py | 1 0 + 1 - 0 !
3 files changed, 1 insertion(+), 6 deletions(-)

 in debian we have modern python, don't use the external scandir

disable_prov | (download)

cwltool/argparser.py | 39 1 + 38 - 0 !
requirements.txt | 3 1 + 2 - 0 !
setup.py | 3 1 + 2 - 0 !
tests/test_provenance.py | 650 1 + 649 - 0 !
4 files changed, 4 insertions(+), 691 deletions(-)

 disable --provance until python3-proc issue is resolved

exclude_jshint | (download)

cwltool/argparser.py | 6 1 + 5 - 0 !
cwltool/process.py | 22 2 + 20 - 0 !
tests/test_validate_js.py | 41 0 + 41 - 0 !
3 files changed, 3 insertions(+), 66 deletions(-)

 no javascript validation in this debian package due to licensing issue with jshint

spelling | (download)

cwltool/argparser.py | 2 1 + 1 - 0 !
1 file changed, 1 insertion(+), 1 deletion(-)

 fix spelling typo
cleanup tests | (download)

tests/test_docker.py | 4 2 + 2 - 0 !
tests/test_examples.py | 9 5 + 4 - 0 !
tests/test_ext.py | 9 5 + 4 - 0 !
tests/test_pack.py | 6 3 + 3 - 0 !
tests/test_parallel.py | 3 2 + 1 - 0 !
tests/test_relax_path_checks.py | 4 2 + 2 - 0 !
tests/test_toolargparse.py | 6 4 + 2 - 0 !
7 files changed, 23 insertions(+), 18 deletions(-)

 cleanup test output
python3 | (download)

tests/wf/echo.cwl | 2 1 + 1 - 0 !
tests/wf/js_output.cwl | 4 2 + 2 - 0 !
2 files changed, 3 insertions(+), 3 deletions(-)

 use python3 in test cwl tool description