Package: dazzdb / 1.0+git20250217.a3eefd4-1

compiler-flags.patch Patch series | download
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Description: Honor various compiler flags in upstream Makefile
Author: Afif Elghraoui <afif@debian.org>
Forwarded: https://github.com/thegenemyers/DAZZ_DB/pull/26
Reviewed-By: Étienne Mollier <emollier@debian.org>
Last-Update: 2022-06-08
--- a/Makefile
+++ b/Makefile
@@ -1,6 +1,7 @@
 DEST_DIR = ~/bin
 
 CFLAGS += -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing
+LDLIBS = -lm -lz
 
 ALL = fasta2DB DB2fasta quiva2DB DB2quiva DBsplit DBdust Catrack DBshow DBstats DBrm DBmv DBcp \
       simulator fasta2DAM DAM2fasta rangen arrow2DB DB2arrow DBwipe DBtrim DB2ONE
@@ -8,67 +9,50 @@ ALL = fasta2DB DB2fasta quiva2DB DB2quiv
 all: $(ALL)
 
 fasta2DB: fasta2DB.c DB.c DB.h QV.c QV.h
-	gcc $(CFLAGS) -o fasta2DB fasta2DB.c DB.c QV.c -lm
 
 DB2fasta: DB2fasta.c DB.c DB.h QV.c QV.h
-	gcc $(CFLAGS) -o DB2fasta DB2fasta.c DB.c QV.c -lm
 
+quiva2DB: CPPFLAGS += -DINTERACTIVE
 quiva2DB: quiva2DB.c DB.c DB.h QV.c QV.h
-	gcc $(CFLAGS) -DINTERACTIVE -o quiva2DB quiva2DB.c DB.c QV.c -lm
 
 DB2quiva: DB2quiva.c DB.c DB.h QV.c QV.h
-	gcc $(CFLAGS) -o DB2quiva DB2quiva.c DB.c QV.c -lm
 
 DB2arrow: DB2arrow.c DB.c QV.c DB.h QV.h
-	gcc $(CFLAGS) -o DB2arrow DB2arrow.c DB.c QV.c -lz
 
 arrow2DB: arrow2DB.c DB.c QV.c DB.h QV.h
-	gcc $(CFLAGS) -o arrow2DB arrow2DB.c DB.c QV.c -lz
 
 DBsplit: DBsplit.c DB.c DB.h QV.c QV.h
-	gcc $(CFLAGS) -o DBsplit DBsplit.c DB.c QV.c -lm
 
 DBtrim: DBtrim.c DB.c DB.h QV.c QV.h
-	gcc $(CFLAGS) -o DBtrim DBtrim.c DB.c QV.c -lm
 
 DBdust: DBdust.c DB.c DB.h QV.c QV.h
-	gcc $(CFLAGS) -o DBdust DBdust.c DB.c QV.c -lm
 
 Catrack: Catrack.c DB.c DB.h QV.c QV.h
-	gcc $(CFLAGS) -o Catrack Catrack.c DB.c QV.c -lm
 
 DBshow: DBshow.c DB.c DB.h QV.c QV.h
-	gcc $(CFLAGS) -o DBshow DBshow.c DB.c QV.c -lm
 
 DB2ONE: DB2ONE.c DB.c DB.h QV.c QV.h ONElib.c ONElib.h
-	gcc $(CFLAGS) -o DB2ONE DB2ONE.c DB.c QV.c ONElib.c -lm
 
 DBstats: DBstats.c DB.c DB.h QV.c QV.h
-	gcc $(CFLAGS) -o DBstats DBstats.c DB.c QV.c -lm
 
 DBrm: DBrm.c DB.c DB.h QV.c QV.h
-	gcc $(CFLAGS) -o DBrm DBrm.c DB.c QV.c -lm
 
+DBmv: CPPFLAGS += -DMOVE
 DBmv: DBmv.c DB.c DB.h QV.c QV.h
-	gcc $(CFLAGS) -DMOVE -o DBmv DBmv.c DB.c QV.c -lm
 
 DBcp: DBmv.c DB.c DB.h QV.c QV.h
-	gcc $(CFLAGS) -o DBcp DBmv.c DB.c QV.c -lm
+	$(CC) $(CPPFLAGS) $(CFLAGS) $(LDFLAGS) -o $@ $^ $(LDLIBS)
 
 simulator: simulator.c DB.c DB.h QV.c QV.h
-	gcc $(CFLAGS) -o simulator simulator.c DB.c QV.c -lm
 
+rangen: LDLIBS =
 rangen: rangen.c
-	gcc $(CFLAGS) -o rangen rangen.c
 
 fasta2DAM: fasta2DAM.c DB.c DB.h QV.c QV.h
-	gcc $(CFLAGS) -o fasta2DAM fasta2DAM.c DB.c QV.c -lm
 
 DAM2fasta: DAM2fasta.c DB.c DB.h QV.c QV.h
-	gcc $(CFLAGS) -o DAM2fasta DAM2fasta.c DB.c QV.c -lm
 
 DBwipe: DBwipe.c DB.c DB.h QV.c QV.h
-	gcc $(CFLAGS) -o DBwipe DBwipe.c DB.c QV.c -lm
 
 clean:
 	rm -f $(ALL)