Package: dnaclust / 3-7

Metadata

Package Version Patches format
dnaclust 3-7 3.0 (quilt)

Patch series

view the series file
Patch File delta Description
fix_shel_path.patch | (download)

generate_test_clusters.sh | 2 1 + 1 - 0 !
1 file changed, 1 insertion(+), 1 deletion(-)

 fix path to shell


do_not_staically_linking.patch | (download)

Makefile | 8 4 + 4 - 0 !
1 file changed, 4 insertions(+), 4 deletions(-)

 prevent static linking and propagate hardening options


resolve_name_space_conflict_fastasort.patch | (download)

dnaclust-abun.sh | 6 3 + 3 - 0 !
dnaclust-ref | 6 3 + 3 - 0 !
find-large-clusters | 6 3 + 3 - 0 !
star-align | 6 3 + 3 - 0 !
4 files changed, 12 insertions(+), 12 deletions(-)

 set explicit path for fastasort to /usr/lib/dnaclust to avoid
 name space conflict with exonerate.
 .
 Besides the reported name space conflict there ase also a conflict
 with mira-assembler detected which is also featuring a file
   /usr/bin/fastaselect
 This executable from dnaclust was moved as well to /usr/lib/dnaclust.


build_with_gcc6.patch | (download)

Makefile | 2 1 + 1 - 0 !
dnaclust.cpp | 2 1 + 1 - 0 !
2 files changed, 2 insertions(+), 2 deletions(-)

 allow building with gcc 6